6MBN

LptB E163Q in complex with ATP

Summary for 6MBN

• Entry DOI: 10.2210/pdb6mbn/pdb
• Descriptor: Lipopolysaccharide export system ATP-binding protein LptB, SODIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ... (5 entities in total)
• Functional Keywords: lptb, lipopolysaccharide, lps transport, abc-transporter, atp-binding cassette, lipid transport
• Biological source: Escherichia coli (strain K12)
• Total number of polymer chains: 2
• Total formula weight: 54829.66

Authors

Owens, T.W.,Ruiz, N.,Kahne, D. (deposition date: 2018-08-30, release date: 2019-08-14, Last modification date: 2023-10-11)

Primary citation

Simpson, B.W.,Pahil, K.S.,Owens, T.W.,Lundstedt, E.A.,Davis, R.M.,Kahne, D.,Ruiz, N.
Combining Mutations That Inhibit Two Distinct Steps of the ATP Hydrolysis Cycle Restores Wild-Type Function in the Lipopolysaccharide Transporter and Shows that ATP Binding Triggers Transport.
Mbio, 10:-, 2019

PubMed Abstract: ATP-binding cassette (ABC) transporters constitute a large family of proteins present in all domains of life. They are powered by dynamic ATPases that harness energy from binding and hydrolyzing ATP through a cycle that involves the closing and reopening of their two ATP-binding domains. The LptBFGC exporter is an essential ABC transporter that assembles lipopolysaccharides (LPS) on the surface of Gram-negative bacteria to form a permeability barrier against many antibiotics. LptBFGC extracts newly synthesized LPS molecules from the inner membrane and powers their transport across the periplasm and through the outer membrane. How LptBFGC functions remains poorly understood. Here, we show that the C-terminal domain of the dimeric LptB ATPase is essential for LPS transport in Specific changes in the C-terminal domain of LptB cause LPS transport defects that can be repaired by intragenic suppressors altering the ATP-binding domains. Surprisingly, we found that each of two lethal changes in the ATP-binding and C-terminal domains of LptB, when present in combined form, suppressed the defects associated with the other to restore LPS transport to wild-type levels both and We present biochemical evidence explaining the effect that each of these mutations has on LptB function and how the observed cosuppression results from the opposing lethal effects these changes have on the dimerization state of the LptB ATPase. We therefore propose that these sites modulate the closing and reopening of the LptB dimer, providing insight into how the LptBFGC transporter cycles to export LPS to the cell surface and how to inhibit this essential envelope biogenesis process. Gram-negative bacteria are naturally resistant to many antibiotics because their surface is covered by the glycolipid LPS. Newly synthesized LPS is transported across the cell envelope by the multiprotein Lpt machinery, which includes LptBFGC, an unusual ABC transporter that extracts LPS from the inner membrane. Like in other ABC transporters, the LptBFGC transport cycle is driven by the cyclical conformational changes that a cytoplasmic, dimeric ATPase, LptB, undergoes when binding and hydrolyzing ATP. How these conformational changes are controlled in ABC transporters is poorly understood. Here, we identified two lethal changes in LptB that, when combined, remarkably restore wild-type transport function. Biochemical studies revealed that the two changes affect different steps in the transport cycle, having opposing, lethal effects on LptB's dimerization cycle. Our work provides mechanistic details about the LptBFGC extractor that could be used to develop Lpt inhibitors that would overcome the innate antibiotic resistance of Gram-negative bacteria.

PubMed: 31431556
DOI: 10.1128/mBio.01931-19

Experimental method

X-RAY DIFFRACTION (1.957 Å)