Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2KQS
DownloadVisualize
BU of 2kqs by Molmil
Phosphorylation of SUMO-interacting motif by CK2 enhances Daxx SUMO binding activity
Descriptor: Death domain-associated protein 6, Small ubiquitin-related modifier 1
Authors:Naik, M.T, Huang, T.H, Shih, H.
Deposit date:2009-11-17
Release date:2010-12-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and functional roles of Daxx SIM phosphorylation in SUMO paralog-selective binding and apoptosis modulation.
Mol.Cell, 42, 2011
5B7A
DownloadVisualize
BU of 5b7a by Molmil
SOLUTION STRUCTURE OF LYS37 ACETYLATED HUMAN SUMO1
Descriptor: Small ubiquitin-related modifier 1
Authors:Naik, M.T, Naik, N, Shih, H, Huang, T.
Deposit date:2016-06-05
Release date:2017-06-07
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Structures Of Human Sumo
To Be Published
6H3A
DownloadVisualize
BU of 6h3a by Molmil
Crystal structure of the KAP1 RBCC domain in complex with the SMARCAD1 CUE1 domain.
Descriptor: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, Transcription intermediary factor 1-beta, ZINC ION
Authors:Newman, J.A, Aitkenhead, H, Lim, M, Williams, H.L, Svejstrup, J.Q, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2018-07-17
Release date:2019-06-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (5.505 Å)
Cite:A Ubiquitin-Binding Domain that Binds a Structural Fold Distinct from that of Ubiquitin.
Structure, 27, 2019
5A2Q
DownloadVisualize
BU of 5a2q by Molmil
Structure of the HCV IRES bound to the human ribosome
Descriptor: 18S RRNA, HCV IRES, MAGNESIUM ION, ...
Authors:Quade, N, Leiundgut, M, Boehringer, D, Heuvel, J.v.d, Ban, N.
Deposit date:2015-05-21
Release date:2015-07-15
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution
Nat.Commun., 6, 2015
7OW7
DownloadVisualize
BU of 7ow7 by Molmil
EIF6-bound large subunit of the human ribosome
Descriptor: 28S rRNA, 5.8S ribosomal RNA, 5S rRNA, ...
Authors:Faille, A, Warren, A.J.
Deposit date:2021-06-16
Release date:2022-10-05
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure of human EIF6-bound large ribosomal subunit
To Be Published
9BLN
DownloadVisualize
BU of 9bln by Molmil
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Descriptor: 40S ribosomal protein S14, ACETIC ACID, Eukaryotic initiation factor 4A-I, ...
Authors:Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Zuber, P, Yifei, D, Albacete-Albacete, L, Ramakrishnan, V, S Fraser, C.
Deposit date:2024-04-30
Release date:2024-09-04
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
Nat Commun, 15, 2024
6AH0
DownloadVisualize
BU of 6ah0 by Molmil
The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhan, X, Yan, C, Zhang, X, Shi, Y.
Deposit date:2018-08-15
Release date:2018-11-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Structures of the human pre-catalytic spliceosome and its precursor spliceosome.
Cell Res., 28, 2018
2LLH
DownloadVisualize
BU of 2llh by Molmil
NMR structure of Npm1_c70
Descriptor: Nucleophosmin
Authors:Banci, L, Bertini, I, Brunori, M, Di Matteo, A, Federici, L, Gallo, A, Lo Sterzo, C, Mori, M.
Deposit date:2011-11-09
Release date:2012-06-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of Nucleophosmin DNA-binding Domain and Analysis of Its Complex with a G-quadruplex Sequence from the c-MYC Promoter.
J.Biol.Chem., 287, 2012
8FKR
DownloadVisualize
BU of 8fkr by Molmil
Human nucleolar pre-60S ribosomal subunit (State B1)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKZ
DownloadVisualize
BU of 8fkz by Molmil
Human nucleolar pre-60S ribosomal subunit (State G)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8QFD
DownloadVisualize
BU of 8qfd by Molmil
UFL1 E3 ligase bound 60S ribosome
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Makhlouf, L, Kulathu, Y, Zeqiraj, E.
Deposit date:2023-09-04
Release date:2024-02-21
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons.
Nature, 627, 2024
8FKQ
DownloadVisualize
BU of 8fkq by Molmil
Human nucleolar pre-60S ribosomal subunit (State A2)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L13, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8QZS
DownloadVisualize
BU of 8qzs by Molmil
Cryo-EM structure of the cross-exon B-like complex
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, Microfibrillar-associated protein 1, NHP2-like protein 1, ...
Authors:Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R.
Deposit date:2023-10-29
Release date:2024-05-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural insights into the cross-exon to cross-intron spliceosome switch.
Nature, 630, 2024
8FKP
DownloadVisualize
BU of 8fkp by Molmil
Human nucleolar pre-60S ribosomal subunit (State A1)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L13, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKS
DownloadVisualize
BU of 8fks by Molmil
Human nucleolar pre-60S ribosomal subunit (State B2)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8H6E
DownloadVisualize
BU of 8h6e by Molmil
Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhang, W, Zhan, X, Zhang, X, Bai, R, Lei, J, Yan, C, Shi, Y.
Deposit date:2022-10-17
Release date:2024-05-01
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into human exon-defined spliceosome prior to activation.
Cell Res., 34, 2024
8H6J
DownloadVisualize
BU of 8h6j by Molmil
Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Zhang, W, Zhan, X, Zhang, X, Lei, J, Yan, C, Shi, Y.
Deposit date:2022-10-18
Release date:2024-05-01
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural insights into human exon-defined spliceosome prior to activation.
Cell Res., 34, 2024
9WBG
DownloadVisualize
BU of 9wbg by Molmil
Structure of human 26S proteasome complexed with midnolin, 19S proteasome with Ubl and Catch domain resolved
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ...
Authors:Zhu, C, Qin, L, Liang, L.
Deposit date:2025-08-14
Release date:2026-04-01
Last modified:2026-04-08
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Structural dynamics of the midnolin-proteasome during ubiquitin-independent substrate turnover.
Nat Commun, 17, 2026
9ZE3
DownloadVisualize
BU of 9ze3 by Molmil
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (Distal DHX15 state)
Descriptor: ATP-dependent RNA helicase DHX15, PHD finger-like domain-containing protein 5A, Pre-mRNA, ...
Authors:Liu, S, Su, T, Zhou, Z.H.
Deposit date:2025-11-27
Release date:2026-04-15
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:The tumour suppressor RBM5 activates the helicase DHX15 to regulate splicing.
Biorxiv, 2026
9ZE0
DownloadVisualize
BU of 9ze0 by Molmil
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (Proximal DHX15 state)
Descriptor: ATP-dependent RNA helicase DHX15, PHD finger-like domain-containing protein 5A, RNA-binding protein 5, ...
Authors:Liu, S, Su, T, Zhou, Z.H.
Deposit date:2025-11-26
Release date:2026-04-15
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:The tumour suppressor RBM5 activates the helicase DHX15 to regulate splicing.
Biorxiv, 2026
9ZEC
DownloadVisualize
BU of 9zec by Molmil
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (SF3A state 1)
Descriptor: PHD finger-like domain-containing protein 5A, Pre-mRNA, RNA-binding protein 5, ...
Authors:Liu, S, Su, T, Zhou, Z.H.
Deposit date:2025-11-29
Release date:2026-04-15
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:The tumour suppressor RBM5 activates the helicase DHX15 to regulate splicing.
Biorxiv, 2026
9ZE2
DownloadVisualize
BU of 9ze2 by Molmil
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (core)
Descriptor: PHD finger-like domain-containing protein 5A, RNA-binding protein 5, Splicing factor 3A subunit 2, ...
Authors:Liu, S, Su, T, Zhou, Z.H.
Deposit date:2025-11-27
Release date:2026-04-15
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:The tumour suppressor RBM5 activates the helicase DHX15 to regulate splicing.
Biorxiv, 2026
9ZED
DownloadVisualize
BU of 9zed by Molmil
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (SF3A state 2)
Descriptor: PHD finger-like domain-containing protein 5A, RNA-binding protein 5, Splicing factor 3A subunit 1, ...
Authors:Liu, S, Su, T, Zhou, Z.H.
Deposit date:2025-11-29
Release date:2026-04-15
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:The tumour suppressor RBM5 activates the helicase DHX15 to regulate splicing.
Biorxiv, 2026
7R4X
DownloadVisualize
BU of 7r4x by Molmil
Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Pellegrino, S, Dent, K.C, Spikes, T, Warren, A.J.
Deposit date:2022-02-09
Release date:2023-02-22
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.15 Å)
Cite:Cryo-EM reconstruction of the human 40S ribosomal subunit at 2.15 angstrom resolution.
Nucleic Acids Res., 51, 2023
9GMO
DownloadVisualize
BU of 9gmo by Molmil
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Descriptor: 28S rRNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5.8S rRNA, ...
Authors:Bothe, A, Ban, N, Kostova, K.
Deposit date:2024-08-29
Release date:2024-10-02
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:ZNF574 is a Quality Control Factor For Defective Ribosome Biogenesis Intermediates.
Biorxiv, 2024

252456

PDB entries from 2026-04-22

PDB statisticsPDBj update infoContact PDBjnumon