PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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7VRL	Solution structure of Rbfox RRM bound to a non-cognate RNA Descriptor: RNA (5'-R(*UP*GP*CP*AP*UP*AP*U)-3'), RNA binding protein fox-1 homolog 1 Authors: Yang, F, Varani, G. Deposit date: 2021-10-23 Release date: 2022-10-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Two distinct binding modes provide the RNA-binding protein RbFox with extraordinary sequence specificity. Nat Commun, 14, 2023
4A93	RNA Polymerase II elongation complex containing a CPD Lesion Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*T*TTP*TP*TP*CP*C BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP*AP)-3', ... Authors: Walmacq, C, Cheung, A.C.M, Kireeva, M.L, Lubkowska, L, Ye, C, Gotte, D, Strathern, J.N, Carell, T, Cramer, P, Kashlev, M. Deposit date: 2011-11-23 Release date: 2012-03-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Mechanism of Translesion Transcription by RNA Polymerase II and its Role in Cellular Resistance to DNA Damage. Mol.Cell, 46, 2012
8BWT	Structure of a symmetrical internal loop motif with three consecutive U:U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV2 genomic RNA Descriptor: RNA (26-MER) Authors: Voegele, J, Duchardt-Ferner, E, Schwalbe, H, Woehnert, J. Deposit date: 2022-12-07 Release date: 2023-08-30 Last modified: 2024-07-03 Method: SOLUTION NMR Cite: Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV-2 genomic RNA. Nucleic Acids Res., 52, 2024
6GWK	The crystal structure of Hfq from Caulobacter crescentus Descriptor: RNA-binding protein Hfq Authors: Santiago-Frangos, A, Frohlich, K.S, Jeliazkov, J.R, Gray, J.R, Luisi, B.F, Woodson, S.A, Hardwick, S.W. Deposit date: 2018-06-25 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Caulobacter crescentusHfq structure reveals a conserved mechanism of RNA annealing regulation. Proc.Natl.Acad.Sci.USA, 116, 2019
8ID2	Crystal structure of the ubiquitin-like domain in the SF3A1 subunit of human U2 snRNP complexed with the stem-loop 4 of U1 snRNA Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*CP*GP*UP*UP*CP*GP*CP*GP*CP*UP*UP*UP*CP*CP*CP*C)-3'), Splicing factor 3A subunit 1 Authors: Terawaki, S, Nameki, N, Kuwasako, K. Deposit date: 2023-02-12 Release date: 2023-05-17 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into recognition of SL4, the UUCG stem-loop, of human U1 snRNA by the ubiquitin-like domain, including the C-terminal tail in the SF3A1 subunit of U2 snRNP. J.Biochem., 174, 2023
6F5P	A mechanism for the activation of the influenza virus transcriptase Descriptor: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, DNA-directed RNA polymerase subunit, MAGNESIUM ION, ... Authors: Serna Martin, I, Grimes, J.M. Deposit date: 2017-12-02 Release date: 2018-09-19 Method: X-RAY DIFFRACTION (4.14 Å) Cite: A Mechanism for the Activation of the Influenza Virus Transcriptase. Mol. Cell, 70, 2018
6F5O	A mechanism for the activation of the influenza virus transcriptase Descriptor: 3' promoter vRNA, 5' promoter vRNA, Polymerase acidic protein, ... Authors: Serna Martin, I, Grimes, J.M. Deposit date: 2017-12-02 Release date: 2018-06-27 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (9.8 Å) Cite: A Mechanism for the Activation of the Influenza Virus Transcriptase. Mol. Cell, 70, 2018
4ILJ	Crystal structure of an Prp8p RNaseH W1911A mutant protein Descriptor: Pre-mRNA-splicing factor 8 Authors: Weber, G, Heroven, C, Santos, K.F, Wahl, M.C. Deposit date: 2012-12-31 Release date: 2013-03-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.0001 Å) Cite: Structural basis for dual roles of Aar2p in U5 snRNP assembly. Genes Dev., 27, 2013
4IQM	Crystal structure of the catalytic domain of human Pus1 Descriptor: tRNA pseudouridine synthase A, mitochondrial Authors: Czudnochowski, N, Finer-Moore, J.S, Stroud, R.M. Deposit date: 2013-01-11 Release date: 2013-06-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: In Human Pseudouridine Synthase 1 (hPus1), a C-Terminal Helical Insert Blocks tRNA from Binding in the Same Orientation as in the Pus1 Bacterial Homologue TruA, Consistent with Their Different Target Selectivities. J.Mol.Biol., 425, 2013
4WFZ	Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase - NaCl Crystal Form Descriptor: RNA-directed RNA polymerase, SODIUM ION Authors: Peersen, O.B, McDonald, S.M. Deposit date: 2014-09-17 Release date: 2014-10-22 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.803 Å) Cite: Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases. J.Virol., 89, 2015
6H45	crystal structure of the human TGT catalytic subunit QTRT1 in complex with queuine Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, BROMIDE ION, CHLORIDE ION, ... Authors: Johannsson, S, Neumann, P, Ficner, R. Deposit date: 2018-07-20 Release date: 2018-09-05 Last modified: 2023-03-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of the Human tRNA Guanine Transglycosylase Catalytic Subunit QTRT1. Biomolecules, 8, 2018
3RW6	Structure of nuclear RNA export factor TAP bound to CTE RNA Descriptor: Nuclear RNA export factor 1, constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA Authors: Teplova, M, Khin, N.W, Patel, D.J, Izaurralde, E. Deposit date: 2011-05-07 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-function studies of nucleocytoplasmic transport of retroviral genomic RNA by mRNA export factor TAP. Nat.Struct.Mol.Biol., 18, 2011
8SP9	Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold Descriptor: tRNA scaffold,CVB3 Cloverleaf RNA Authors: Gottipati, K, McNeme, S.C, Choi, K.H. Deposit date: 2023-05-02 Release date: 2023-08-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.92 Å) Cite: Structural basis for cloverleaf RNA-initiated viral genome replication. Nucleic Acids Res., 51, 2023
1BZ2	STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE Descriptor: TRNA Authors: Durant, P.C, Davis, D.R. Deposit date: 1998-11-05 Release date: 1999-04-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J.Mol.Biol., 285, 1999
8UKU	RNA polymerase II elongation complex with Fapy-dG lesion with CMP added Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKR	RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.78 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKS	RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKT	RNA polymerase II elongation complex with Fapy-dG lesion with AMP added Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
1BZT	STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE Descriptor: TRNA Authors: Durant, P.C, Davis, D.R. Deposit date: 1998-11-05 Release date: 1999-04-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J.Mol.Biol., 285, 1999
1BZU	STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE Descriptor: TRNA Authors: Durant, P.C, Davis, D.R. Deposit date: 1998-11-05 Release date: 1999-04-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J.Mol.Biol., 285, 1999
1BZ3	STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE Descriptor: TRNA Authors: Durant, P.C, Davis, D.R. Deposit date: 1998-11-05 Release date: 1999-04-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J.Mol.Biol., 285, 1999
7R2V	Structure of nsp14 from SARS-CoV-2 in complex with SAH Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, Proofreading exoribonuclease nsp14, ... Authors: Czarna, A, Plewka, J, Kresik, L, Matsuda, A, Abdulkarim, K, Robinson, C, OByrne, S, Cunningham, F, Georgiou, I, Pachota, M, Popowicz, G.M, Wyatt, P.G, Dubin, G, Pyrc, K. Deposit date: 2022-02-06 Release date: 2022-03-09 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Refolding of lid subdomain of SARS-CoV-2 nsp14 upon nsp10 interaction releases exonuclease activity. Structure, 30, 2022
7KW8	NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis Descriptor: tRNA 2'-phosphotransferase Authors: Alphonse, S, Dantuluri, S, Banerjee, A, Shuman, S, Ghose, R. Deposit date: 2020-11-30 Release date: 2021-10-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR solution structures of Runella slithyformis RNA 2'-phosphotransferase Tpt1 provide insights into NAD+ binding and specificity. Nucleic Acids Res., 49, 2021
8UKQ	RNA polymerase II elongation complex with Fapy-dG lesion in apo state Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
3B0U	tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA fragment Descriptor: FLAVIN MONONUCLEOTIDE, RNA (5'-R(*GP*GP*(H2U)P*A)-3'), tRNA-dihydrouridine synthase Authors: Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. Deposit date: 2011-06-14 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.948 Å) Cite: Molecular basis of dihydrouridine formation on tRNA Proc.Natl.Acad.Sci.USA, 108, 2011

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