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8IM5
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BU of 8im5 by Molmil
Solution structure of the mouse HOIL1-L NZF domain in the free form
Descriptor: RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION
Authors:Walinda, E, Morimoto, D.
Deposit date:2023-03-06
Release date:2023-08-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the HOIL-1L NZF domain reveals a conformational switch regulating linear ubiquitin affinity.
J.Biol.Chem., 299, 2023
8IM1
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BU of 8im1 by Molmil
mCherry-LaM1 complex
Descriptor: LaM1, MCherry fluorescent protein, SULFATE ION
Authors:Liang, H, Liu, R, Ding, Y.
Deposit date:2023-03-05
Release date:2023-06-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insights into the Binding of Red Fluorescent Protein mCherry-Specific Nanobodies.
Int J Mol Sci, 24, 2023
8IM0
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BU of 8im0 by Molmil
mCherry-LaM8 complex
Descriptor: LaM8, MCherry fluorescent protein
Authors:Liang, H, Liu, R, Ding, Y.
Deposit date:2023-03-05
Release date:2023-06-21
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Structural Insights into the Binding of Red Fluorescent Protein mCherry-Specific Nanobodies.
Int J Mol Sci, 24, 2023
8ILX
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BU of 8ilx by Molmil
mCherry-LaM3 complex
Descriptor: LAM3, MCherry fluorescent protein
Authors:Liang, H, Liu, R, Ding, Y.
Deposit date:2023-03-05
Release date:2023-06-21
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structural Insights into the Binding of Red Fluorescent Protein mCherry-Specific Nanobodies.
Int J Mol Sci, 24, 2023
8ILV
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BU of 8ilv by Molmil
Cryo-EM structure of PI3Kalpha in complex with compound 18
Descriptor: N-[(2R)-1-(ethylamino)-1-oxidanylidene-3-[3-(2-quinoxalin-6-ylethynyl)phenyl]propan-2-yl]-2,3-dimethyl-quinoxaline-6-carboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Zhou, Q, Liu, X, Neri, D, Li, W, Favalli, N, Bassi, G, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2023-03-04
Release date:2023-09-06
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structural insights into the interaction of three Y-shaped ligands with PI3K alpha.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ILS
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BU of 8ils by Molmil
Cryo-EM structure of PI3Kalpha in complex with compound 17
Descriptor: N-[(2R)-1-(ethylamino)-1-oxidanylidene-3-[4-(2-quinoxalin-6-ylethynyl)phenyl]propan-2-yl]-2,3-dimethyl-quinoxaline-6-carboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Zhou, Q, Liu, X, Neri, D, Li, W, Favalli, N, Bassi, G, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2023-03-04
Release date:2023-09-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insights into the interaction of three Y-shaped ligands with PI3K alpha.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ILR
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BU of 8ilr by Molmil
Cryo-EM structure of PI3Kalpha in complex with compound 16
Descriptor: N-[(2S)-1-(ethylamino)-1-oxidanylidene-3-[4-(2-quinoxalin-6-ylethynyl)phenyl]propan-2-yl]-2,3-dimethyl-quinoxaline-6-carboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Zhou, Q, Liu, X, Neri, D, Li, W, Favalli, N, Bassi, G, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2023-03-04
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural insights into the interaction of three Y-shaped ligands with PI3K alpha.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ILM
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BU of 8ilm by Molmil
The cryo-EM structure of eight Rubisco large subunits (RbcL), two Arabidopsis thaliana Rubisco accumulation factors 1 (AtRaf1), and seven Arabidopsis thaliana Bundle Sheath Defective 2 (AtBSD2)
Descriptor: Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, Ribulose bisphosphate carboxylase large chain, ...
Authors:Wang, R, Song, H, Zhang, W, Wang, N, Zhang, S, Shao, R.
Deposit date:2023-03-03
Release date:2023-11-01
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly.
Mol Plant, 16, 2023
8ILL
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BU of 8ill by Molmil
Crystal structure of a highly photostable and bright green fluorescent protein at pH5.6
Descriptor: CHLORIDE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, green fluorescent protein
Authors:Ago, H, Ando, R, Hirano, M, Shimozono, S, Miyawaki, A, Yamamoto, M.
Deposit date:2023-03-03
Release date:2023-10-04
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:StayGold variants for molecular fusion and membrane-targeting applications.
Nat.Methods, 21, 2024
8ILK
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BU of 8ilk by Molmil
Crystal structure of a highly photostable and bright green fluorescent protein at pH8.5
Descriptor: CHLORIDE ION, Green FLUORESCENT PROTEIN
Authors:Ago, H, Ando, R, Hirano, M, Shimozono, S, Miyawaki, A, Yamamoto, M.
Deposit date:2023-03-03
Release date:2023-10-04
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:StayGold variants for molecular fusion and membrane-targeting applications.
Nat.Methods, 21, 2024
8ILB
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BU of 8ilb by Molmil
The complexes of RbcL, AtRaf1 and AtBSD2 (LFB)
Descriptor: Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, Ribulose bisphosphate carboxylase large chain, ...
Authors:Wang, R, Song, H, Zhang, W, Wang, N, Zhang, S, Shao, R.
Deposit date:2023-03-03
Release date:2023-11-01
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly.
Mol Plant, 16, 2023
8ILA
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BU of 8ila by Molmil
Crystal structure of LmbT from Streptomyces lincolnensis NRRL ISP-5355 in complex with substrates
Descriptor: (2~{S})-3-[2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-1~{H}-imidazol-5-yl]-2-(trimethyl-$l^{4}-azanyl)propanoic acid, GUANOSINE-5'-DIPHOSPHATE, Glycosyltransferase
Authors:Dai, Y, Qiao, H, Xia, M, Fang, P, Liu, W.
Deposit date:2023-03-03
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural Basis of Low-Molecular-Weight Thiol Glycosylation in Lincomycin A Biosynthesis.
Acs Chem.Biol., 18, 2023
8IL8
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BU of 8il8 by Molmil
Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis
Descriptor: Aldolase, FE (II) ION
Authors:Tsujino, S, Yamada, Y, Fujiwara, T.
Deposit date:2023-03-03
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.769 Å)
Cite:Structural and functional analysis of pyruvic oxime dioxygenase, a key enzyme of heterotrophic nitrification
To Be Published
8IL7
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BU of 8il7 by Molmil
Structure of human soluble Adenylyl Cyclase in complex with lactate
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, Adenylate cyclase type 10, GLYCEROL
Authors:Li, Q.J, Li, Z.L, Gao, P.
Deposit date:2023-03-02
Release date:2023-07-26
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of human soluble Adenylyl Cyclase in complex with lactate
To Be Published
8IKZ
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BU of 8ikz by Molmil
The mutant structure of DHAD
Descriptor: Dihydroxy-acid dehydratase, chloroplastic, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Zhou, J, Zang, X, Tang, Y, Yan, Y.
Deposit date:2023-03-01
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The mutant structure of DHAD
To Be Published
8IKD
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BU of 8ikd by Molmil
Structure of DNA binding domain of McrBC endonuclease bound to DNA: Y41F-L68Y double mutant
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ...
Authors:Adhav, V.A, Saikrishnan, K.
Deposit date:2023-02-28
Release date:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of target recognition by the DNA binding domain of McrBC
To Be Published
8IK8
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BU of 8ik8 by Molmil
Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68F mutant
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ...
Authors:Adhav, V.A, Saikrishnan, K.
Deposit date:2023-02-28
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of target recognition by the DNA binding domain of McrBC
To Be Published
8IK5
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BU of 8ik5 by Molmil
Transcription factor LMX1a homeobox domain in complex with Wnt1 promoter
Descriptor: DNA (5'-D(*CP*CP*AP*TP*AP*TP*TP*TP*AP*AP*TP*CP*TP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*AP*TP*TP*AP*AP*AP*TP*AP*TP*G)-3'), GLYCEROL, ...
Authors:Lv, M.Q, Lin, L.Q.
Deposit date:2023-02-28
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.989 Å)
Cite:Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain
Febs J., 2024
8IK4
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BU of 8ik4 by Molmil
Structure of DNA binding domain of McrBC endonuclease bound to hemimethylated DNA: L68F mutant
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*TP*CP*T)-3'), ...
Authors:Adhav, V.A, Saikrishnan, K.
Deposit date:2023-02-28
Release date:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of target recognition by the DNA binding domain of McrBC
To Be Published
8IK3
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BU of 8ik3 by Molmil
Structure of Stimulator of interferon genes/ligand complex
Descriptor: Stimulator of interferon genes protein,Immune protein Tsi3, cGAMP
Authors:Lu, D.F, Shang, G.J.
Deposit date:2023-02-28
Release date:2023-05-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The mechanism of STING autoinhibition and activation.
Mol.Cell, 83, 2023
8IK0
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BU of 8ik0 by Molmil
Cryo-EM structure of Stimulator of interferon genes
Descriptor: Stimulator of interferon genes protein,Immune protein Tsi3
Authors:Lu, D.F, Shang, G.J.
Deposit date:2023-02-28
Release date:2023-05-17
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The mechanism of STING autoinhibition and activation.
Mol.Cell, 83, 2023
8IJX
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BU of 8ijx by Molmil
Cryo-EM structure of the gastric proton pump with bound DQ-18
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-[4-[(5-chloranyl-2-phenylmethoxy-phenyl)methoxy]phenyl]-N-methyl-methanamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Abe, K, Yokoshima, S, Yoshimori, A.
Deposit date:2023-02-28
Release date:2023-08-30
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:Deep learning driven de novo drug design based on gastric proton pump structures.
Commun Biol, 6, 2023
8IJW
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BU of 8ijw by Molmil
Cryo-EM structure of the gastric proton pump with bound DQ-06
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Abe, K, Yokoshima, S, Yoshimori, A.
Deposit date:2023-02-28
Release date:2023-08-30
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.19 Å)
Cite:Deep learning driven de novo drug design based on gastric proton pump structures.
Commun Biol, 6, 2023
8IJV
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BU of 8ijv by Molmil
Cryo-EM structure of the gastric proton pump with bound DQ-02
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[[5-chloranyl-2-(4-chlorophenyl)phenyl]methoxy]-N-methyl-but-2-yn-1-amine, ...
Authors:Abe, K, Yokoshima, S, Yoshimori, A.
Deposit date:2023-02-28
Release date:2023-08-30
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Deep learning driven de novo drug design based on gastric proton pump structures.
Commun Biol, 6, 2023
8IJU
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BU of 8iju by Molmil
ATP-dependent RNA helicase DDX39A (URH49delta41)
Descriptor: 1,2-ETHANEDIOL, ATP-dependent RNA helicase DDX39A, PHOSPHATE ION, ...
Authors:Mikami, B, Fujita, K, Masuda, S, Kojima, M.
Deposit date:2023-02-28
Release date:2024-01-24
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural differences between the closely related RNA helicases, UAP56 and URH49, fashion distinct functional apo-complexes.
Nat Commun, 15, 2024

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PDB entries from 2024-07-10

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