Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3D5E
DownloadVisualize
BU of 3d5e by Molmil
Crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by paraoxon
Descriptor: DIETHYL PHOSPHONATE, FORMIC ACID, Platelet-activating factor acetylhydrolase
Authors:Samanta, U, Bahnson, B.J.
Deposit date:2008-05-16
Release date:2008-09-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Human Plasma Platelet-activating Factor Acetylhydrolase: STRUCTURAL IMPLICATION TO LIPOPROTEIN BINDING AND CATALYSIS.
J.Biol.Chem., 283, 2008
4BNP
DownloadVisualize
BU of 4bnp by Molmil
3D structure of E. coli Isocitrate Dehydrogenase K100M mutant in complex with isocitrate and magnesium(II)
Descriptor: ISOCITRATE DEHYDROGENASE [NADP], ISOCITRIC ACID, MAGNESIUM ION, ...
Authors:Miller, S.P, Goncalves, S, Matias, P.M, Dean, A.M.
Deposit date:2013-05-16
Release date:2014-05-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Evolution of a Transition State: Role of Lys100 in the Active Site of Isocitrate Dehydrogenase.
Chembiochem, 15, 2014
3D6B
DownloadVisualize
BU of 3d6b by Molmil
2.2 A crystal structure of glutaryl-CoA dehydrogenase from Burkholderia pseudomallei
Descriptor: Glutaryl-CoA dehydrogenase, methyl thiophene-2-carboxylate
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2008-05-19
Release date:2008-06-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Probing conformational states of glutaryl-CoA dehydrogenase by fragment screening.
Acta Crystallogr.,Sect.F, 67, 2011
6HY4
DownloadVisualize
BU of 6hy4 by Molmil
Co(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL)
Descriptor: CHLORIDE ION, Co(II)-substituted Wells-Dawson, Lysozyme C
Authors:Vandebroek, L, Van Meervelt, L, Parac-Vogt, T.N.
Deposit date:2018-10-19
Release date:2019-10-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Noncovalent Complexes Formed between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme
Eur J Inorg Chem, 2019
2I5I
DownloadVisualize
BU of 2i5i by Molmil
CRYSTAL STRUCTURE OF A PUTATIVE CELLOBIOSE-PHOSPHATE CLEAVAGE PROTEIN (EF3048) FROM ENTEROCOCCUS FAECALIS V583 AT 1.70 A RESOLUTION
Descriptor: UPF0249 protein EF_3048
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-08-24
Release date:2006-09-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of hypothetical protein (EF3048) from ENTEROCOCCUS FAECALIS V583 at 1.70 A resolution
To be published
5WF6
DownloadVisualize
BU of 5wf6 by Molmil
Agonist bound human A2a adenosine receptor with S91A mutation at 2.90 A resolution
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide, Human A2a adenosine receptor T4L chimera
Authors:White, K.L, Eddy, M.T, Gao, Z, Han, G.W, Hanson, M.A, Lian, T, Deary, A, Patel, N, Jacobson, K.A, Katritch, V, Stevens, R.C.
Deposit date:2017-07-11
Release date:2018-02-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Connection between Activation Microswitch and Allosteric Sodium Site in GPCR Signaling.
Structure, 26, 2018
2RSC
DownloadVisualize
BU of 2rsc by Molmil
Solution Structure of the bombyx mori lysozyme
Descriptor: Lysozyme
Authors:Sato, M, Tochio, N, Aizawa, T.
Deposit date:2011-12-19
Release date:2012-12-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure of the Bombyx Mori LYSOZYME
To be Published
2HVM
DownloadVisualize
BU of 2hvm by Molmil
HEVAMINE A AT 1.8 ANGSTROM RESOLUTION
Descriptor: HEVAMINE
Authors:Terwisscha Van Scheltinga, A.C, Hennig, M, Dijkstra, B.W.
Deposit date:1996-07-02
Release date:1997-01-11
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.8 A resolution structure of hevamine, a plant chitinase/lysozyme, and analysis of the conserved sequence and structure motifs of glycosyl hydrolase family 18.
J.Mol.Biol., 262, 1996
4CEU
DownloadVisualize
BU of 4ceu by Molmil
1.58 A resolution native Sporosarcina pasteurii urease
Descriptor: 1,2-ETHANEDIOL, HYDROXIDE ION, NICKEL (II) ION, ...
Authors:Benini, S, Cianci, M, Ciurli, S.
Deposit date:2013-11-12
Release date:2014-08-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Fluoride Inhibition of Sporosarcina Pasteurii Urease: Structure and Thermodynamics.
J.Biol.Inorg.Chem., 19, 2014
3GFB
DownloadVisualize
BU of 3gfb by Molmil
L-Threonine Dehydrogenase (TkTDH) from the hyperthermophilic archaeon Thermococcus kodakaraensis
Descriptor: L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Bowyer, A.
Deposit date:2009-02-26
Release date:2009-10-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and function of the l-threonine dehydrogenase (TkTDH) from the hyperthermophilic archaeon Thermococcus kodakaraensis
J.Struct.Biol., 168, 2009
4C7W
DownloadVisualize
BU of 4c7w by Molmil
Crystal structure of Mouse Hepatitis virus strain S Hemagglutinin- esterase in complex with 4-O-acetylated sialic acid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Zeng, Q.H, Huizinga, E.G.
Deposit date:2013-09-26
Release date:2013-10-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Murine Coronavirus Hemagglutinin-Esterase Receptor-Binding Site: A Major Shift in Ligand Specificity Through Modest Changes in Architecture.
Plos Pathog., 8, 2012
4JTU
DownloadVisualize
BU of 4jtu by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with brequinar analogue
Descriptor: 6-bromo-2-{4-[(2R)-butan-2-yl]phenyl}-3-methylquinoline-4-carboxylic acid, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Zhu, L, Zhu, J, Ren, X, Li, H.
Deposit date:2013-03-24
Release date:2014-03-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human dihydroorotate dehydrogenase (DHODH) with 057
To be Published
3GG7
DownloadVisualize
BU of 3gg7 by Molmil
Crystal structure of an uncharacterized metalloprotein from Deinococcus radiodurans
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, MANGANESE (II) ION, ...
Authors:Bonanno, J.B, Dickey, M, Bain, K.T, Tang, B.K, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-02-27
Release date:2009-03-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of an uncharacterized metalloprotein from Deinococcus radiodurans
To be Published
3GE4
DownloadVisualize
BU of 3ge4 by Molmil
Crystal structure of ferritin:DNA-binding protein DPS from Brucella Melitensis
Descriptor: CALCIUM ION, DNA PROTECTION DURING STARVATION PROTEIN
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-02-25
Release date:2009-03-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of ferritin:DNA-binding protein DPS from Brucella Melitensis
To be Published
4N8Z
DownloadVisualize
BU of 4n8z by Molmil
In situ lysozyme crystallized on a MiTeGen micromesh with benzamidine ligand
Descriptor: BENZAMIDINE, CHLORIDE ION, Lysozyme C, ...
Authors:Yin, X, Scalia, A, Leroy, L, Cuttitta, C.M, Polizzo, G.M, Ericson, D.L, Roessler, C.G, Campos, O, Agarwal, R, Allaire, M, Orville, A.M, Jackimowicz, R, Ma, M.Y, Sweet, R.M, Soares, A.S.
Deposit date:2013-10-18
Release date:2013-10-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Hitting the target: fragment screening with acoustic in situ co-crystallization of proteins plus fragment libraries on pin-mounted data-collection micromeshes.
Acta Crystallogr.,Sect.D, 70, 2014
3ETE
DownloadVisualize
BU of 3ete by Molmil
Crystal structure of bovine glutamate dehydrogenase complexed with hexachlorophene
Descriptor: 2,2'-methanediylbis(3,4,6-trichlorophenol), GLUTAMIC ACID, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Li, M, Smith, T.J.
Deposit date:2008-10-07
Release date:2009-06-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel Inhibitors Complexed with Glutamate Dehydrogenase: ALLOSTERIC REGULATION BY CONTROL OF PROTEIN DYNAMICS
J.Biol.Chem., 284, 2009
6HUI
DownloadVisualize
BU of 6hui by Molmil
The structure of Dps from Listeria innocua soaked with zinc
Descriptor: DNA protection during starvation protein, ZINC ION
Authors:Zeth, K, Okuda, M.
Deposit date:2018-10-08
Release date:2019-09-04
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.995 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
3E2V
DownloadVisualize
BU of 3e2v by Molmil
Crystal structure of an uncharacterized amidohydrolase from Saccharomyces cerevisiae
Descriptor: 3'-5'-exonuclease, GLYCEROL, MAGNESIUM ION
Authors:Bonanno, J.B, Dickey, M, Bain, K.T, Hu, S, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-08-06
Release date:2008-08-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of an uncharacterized amidohydrolase from Saccharomyces cerevisiae
To be Published
2HXX
DownloadVisualize
BU of 2hxx by Molmil
Aminotryptophan Barstar
Descriptor: Barstar
Authors:Rubini, M, Lepthien, S, Golbik, R, Budisa, N.
Deposit date:2006-08-04
Release date:2006-08-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Aminotryptophan-containing barstar
BIOCHIM.BIOPHYS.ACTA, 1764, 2006
4N5F
DownloadVisualize
BU of 4n5f by Molmil
Crystal Structure of a Putative acyl-CoA dehydrogenase with bound FADH2 from Burkholderia cenocepacia J2315
Descriptor: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Putative acyl-CoA dehydrogenase, UNKNOWN ATOM OR ION
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-10-09
Release date:2013-10-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of a Putative acyl-CoA dehydrogenase with bound FADH2 from Burkholderia cenocepacia J2315
TO BE PUBLISHED
4J5P
DownloadVisualize
BU of 4j5p by Molmil
Crystal Structure of a Covalently Bound alpha-Ketoheterocycle Inhibitor (Phenhexyl/Oxadiazole/Pyridine) to a Humanized Variant of Fatty Acid Amide Hydrolase
Descriptor: (1S)-1-{5-[5-(bromomethyl)pyridin-2-yl]-1,3-oxazol-2-yl}-7-phenylheptan-1-ol, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Otrubova, K, Brown, M, McCormick, M.S, Han, G.W, O'Neal, S.T, Cravatt, B.F, Stevens, R.C, Lichtman, A.H, Boger, D.L.
Deposit date:2013-02-08
Release date:2013-05-01
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rational design of Fatty Acid amide hydrolase inhibitors that act by covalently bonding to two active site residues.
J.Am.Chem.Soc., 135, 2013
3E3H
DownloadVisualize
BU of 3e3h by Molmil
Crystal structure of the OP hydrolase mutant from Brevundimonas diminuta
Descriptor: COBALT (II) ION, DIETHYL 4-METHYLBENZYLPHOSPHONATE, Parathion hydrolase
Authors:Li, P, Reeves, T.E, Grimsley, J.K, Wild, J.R.
Deposit date:2008-08-07
Release date:2008-10-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Balancing the stability and the catalytic specificities of OP hydrolases with enhanced V-agent activities.
Protein Eng.Des.Sel., 21, 2008
3I63
DownloadVisualize
BU of 3i63 by Molmil
Peroxide Bound Toluene 4-Monooxygenase
Descriptor: FE (III) ION, HYDROGEN PEROXIDE, Toluene-4-monooxygenase system protein A, ...
Authors:Bailey, L.J, Fox, B.G.
Deposit date:2009-07-06
Release date:2009-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystallographic and catalytic studies of the peroxide-shunt reaction in a diiron hydroxylase.
Biochemistry, 48, 2009
5WI6
DownloadVisualize
BU of 5wi6 by Molmil
Human beta-1 tryptase mutant Ile99Cys
Descriptor: L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide, SULFATE ION, Tryptase alpha/beta-1
Authors:Eigenbrot, C, Maun, H.R.
Deposit date:2017-07-18
Release date:2018-04-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Dual functionality of beta-tryptase protomers as both proteases and cofactors in the active tetramer.
J. Biol. Chem., 293, 2018
7FSE
DownloadVisualize
BU of 7fse by Molmil
Crystal Structure of T. maritima reverse gyrase with a minimal latch
Descriptor: CHLORIDE ION, DODECAETHYLENE GLYCOL, Reverse gyrase, ...
Authors:Rasche, R, Kummel, D, Rudolph, M.G, Klostermeier, D.
Deposit date:2023-01-04
Release date:2023-05-10
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structure of reverse gyrase with a minimal latch that supports ATP-dependent positive supercoiling without specific interactions with the topoisomerase domain.
Acta Crystallogr D Struct Biol, 79, 2023

236371

PDB entries from 2025-05-21

PDB statisticsPDBj update infoContact PDBjnumon