Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5X2W
DownloadVisualize
BU of 5x2w by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase wild type with L-methionine intermediates
Descriptor: (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid, L-methionine gamma-lyase
Authors:Shiba, T, Sato, D, Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Z
DownloadVisualize
BU of 5x2z by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase C116H mutant with L-methionine intermediates
Descriptor: (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid, L-methionine gamma-lyase
Authors:Shiba, T, Sato, D, Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
6WOP
DownloadVisualize
BU of 6wop by Molmil
Crystal structure of gamma-aminobutyrate aminotransferase PuuE from Acinetobacter baumannii
Descriptor: 4-aminobutyrate transaminase, CHLORIDE ION, D(-)-TARTARIC ACID
Authors:Stogios, P.J, Skarina, T, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-04-25
Release date:2020-05-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of gamma-aminobutyrate aminotransferase PuuE from Acinetobacter baumannii
To Be Published
5X30
DownloadVisualize
BU of 5x30 by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase C116H mutant with L-homocysteine intermediates.
Descriptor: (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, (2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-sulfanyl-butanoic acid, 2-AMINO-4-MERCAPTO-BUTYRIC ACID, ...
Authors:Shiba, T, Sato, D, Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
7L7X
DownloadVisualize
BU of 7l7x by Molmil
X-ray structure of the Pcryo_0638 aminotransferase from Psychrobacter cryohalolentis
Descriptor: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, DegT/DnrJ/EryC1/StrS aminotransferase, ...
Authors:Linehan, M.P, Thoden, J.B, Holden, H.M.
Deposit date:2020-12-30
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar.
J.Biol.Chem., 296, 2021
3T4B
DownloadVisualize
BU of 3t4b by Molmil
Crystal Structure of the HCV IRES pseudoknot domain
Descriptor: HCV IRES pseudoknot domain plus crystallization module, NICKEL (II) ION
Authors:Berry, K.E, Waghray, S, Mortimer, S.A, Bai, Y, Doudna, J.A.
Deposit date:2011-07-25
Release date:2011-10-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning.
Structure, 19, 2011
5X2X
DownloadVisualize
BU of 5x2x by Molmil
Crystal structure of Pseudomonas putida methionine gamma-lyase wild type with L-homocysteine intermediates
Descriptor: (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, HYDROSULFURIC ACID, L-methionine gamma-lyase
Authors:Shiba, T, Sato, D, Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
6WPE
DownloadVisualize
BU of 6wpe by Molmil
HUMAN IDO1 IN COMPLEX WITH COMPOUND 4
Descriptor: 4-chloro-N-{[1-(3-chlorobenzene-1-carbonyl)-1,2,3,4-tetrahydroquinolin-6-yl]methyl}benzamide, Indoleamine 2,3-dioxygenase 1
Authors:Lesburg, C.A, Lammens, A.
Deposit date:2020-04-27
Release date:2021-03-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Carbamate and N -Pyrimidine Mitigate Amide Hydrolysis: Structure-Based Drug Design of Tetrahydroquinoline IDO1 Inhibitors.
Acs Med.Chem.Lett., 12, 2021
6XR4
DownloadVisualize
BU of 6xr4 by Molmil
Integrative in situ structure of Parkinsons disease-linked human LRRK2
Descriptor: Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Villa, E, Lasker, K, Audagnotto, M.
Deposit date:2020-07-10
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (14 Å)
Cite:The In Situ Structure of Parkinson's Disease-Linked LRRK2.
Cell, 182, 2020
6XKD
DownloadVisualize
BU of 6xkd by Molmil
Structure of ligand-bound mouse cGAMP hydrolase ENPP1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Fernandez, D, Li, L.
Deposit date:2020-06-26
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-Aided Development of Small-Molecule Inhibitors of ENPP1, the Extracellular Phosphodiesterase of the Immunotransmitter cGAMP.
Cell Chem Biol, 27, 2020
7RX5
DownloadVisualize
BU of 7rx5 by Molmil
Cryo-EM reconstruction of Form1-N2 nanotube (Form I like)
Descriptor: F1-N2 nanotube
Authors:Wang, F, Gnewou, O.M, Solemanifar, A, Xu, C, Egelman, E.H, Conticello, V.P.
Deposit date:2021-08-21
Release date:2021-09-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM of Helical Polymers.
Chem.Rev., 122, 2022
7MDC
DownloadVisualize
BU of 7mdc by Molmil
Full-length wildtype ClbP inhibited by hexanoyl-D-asparagine boronic acid
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate, Beta-lactamase, CHLORIDE ION, ...
Authors:Velilla, J.A, Volpe, M.R, Gaudet, R.
Deposit date:2021-04-03
Release date:2022-09-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A small molecule inhibitor prevents gut bacterial genotoxin production.
Nat.Chem.Biol., 19, 2023
4ZAS
DownloadVisualize
BU of 4zas by Molmil
Crystal structure of sugar aminotransferase CalS13 from Micromonospora echinospora
Descriptor: CalS13, SULFATE ION, THYMIDINE-5'-DIPHOSPHATE, ...
Authors:Wang, F, Singh, S, Miller, M.D, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2015-04-13
Release date:2015-04-29
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structure characterization of sugar aminotransferases CalS13 and WecE provides the basis for a unifying structural model for stereochemical outcome.
To Be Published
2NTN
DownloadVisualize
BU of 2ntn by Molmil
Crystal structure of MabA-C60V/G139A/S144L
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase
Authors:Poncet-Montange, G, Ducasse-Cabanot, S, Quemard, A, Labesse, G, Cohen-Gonsaud, M.
Deposit date:2006-11-08
Release date:2006-11-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Lack of dynamics in the MabA active site kills the enzyme activity: practical consequences for drug-design studies
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
4U12
DownloadVisualize
BU of 4u12 by Molmil
Crystal structure of protein HP0242 from Helicobacter pylori at 1.94 A resolution: a knotted homodimer
Descriptor: Uncharacterized protein HP0242
Authors:Grabowski, M, Shabalin, I.G, Chruszcz, M, Skarina, T, Onopriyenko, O, Guthrie, J, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-07-14
Release date:2014-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of protein HP0242 from Helicobacter pylori at 1.94 A resolution: a knotted homodimer
to be published
4HYH
DownloadVisualize
BU of 4hyh by Molmil
X-RAY Crystal structure of compound 39 bound to human chk1 kinase domain
Descriptor: 2-(6-methoxy-1-oxo-1,3-dihydro-2H-isoindol-2-yl)-N-[4-(piperazin-1-yl)pyridin-3-yl]-1,3-thiazole-4-carboxamide, Serine/threonine-protein kinase Chk1
Authors:Fischmann, T.O.
Deposit date:2012-11-13
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-based design and optimization of 2-aminothiazole-4-carboxamide as a new class of CHK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
4HYI
DownloadVisualize
BU of 4hyi by Molmil
X-RAY Crystal structure of compound 40 bound to human chk1 kinase domain
Descriptor: 2-(1H-indazol-1-yl)-N-[2-(piperazin-1-yl)phenyl]-1,3-thiazole-4-carboxamide, GLYCEROL, Serine/threonine-protein kinase Chk1
Authors:Fischmann, T.O.
Deposit date:2012-11-13
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Structure-based design and optimization of 2-aminothiazole-4-carboxamide as a new class of CHK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
2P1E
DownloadVisualize
BU of 2p1e by Molmil
Crystal structure of the Leishmania infantum glyoxalase II with D-Lactate at the active site
Descriptor: Glyoxalase II, LACTIC ACID, SPERMIDINE, ...
Authors:Trincao, J, Barata, L, Najmudin, S, Bonifacio, C, Romao, M.J.
Deposit date:2007-03-05
Release date:2008-01-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Catalysis and Structural Properties of Leishmania infantum Glyoxalase II: Trypanothione Specificity and Phylogeny.
Biochemistry, 47, 2008
5HXX
DownloadVisualize
BU of 5hxx by Molmil
Crystal structure of AspAT from Corynebacterium glutamicum
Descriptor: 2-OXOGLUTARIC ACID, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, ASPARTATE AMINOTRANSFERASE, ...
Authors:Son, H.-F, Kim, K.-J.
Deposit date:2016-01-31
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into a novel class of aspartate aminotransferase from Corynebacterium glutamicum
To be published
1J85
DownloadVisualize
BU of 1j85 by Molmil
Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)
Descriptor: YibK
Authors:Lim, K, Zhang, H, Toedt, J, Tempcyzk, A, Krajewski, W, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2001-05-20
Release date:2003-02-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot
Proteins, 51, 2003
1EWX
DownloadVisualize
BU of 1ewx by Molmil
Crystal structure of native tryparedoxin I from Crithidia fasciculata
Descriptor: TRYPAREDOXIN I
Authors:Hofmann, B, Guerrero, S.A, Kalisz, H.M, Menge, U, Nogoceke, E, Montemartini, M, Singh, M, Flohe, L, Hecht, H.J.
Deposit date:2000-04-28
Release date:2000-05-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of tryparedoxins revealing interaction with trypanothione.
Biol.Chem., 382, 2001
2J5C
DownloadVisualize
BU of 2j5c by Molmil
Rational conversion of substrate and product specificity in a monoterpene synthase. Structural insights into the molecular basis of rapid evolution.
Descriptor: 1,8-CINEOLE SYNTHASE, BETA-MERCAPTOETHANOL
Authors:Kampranis, S.C, Ioannidis, D, Purvis, A, Mahrez, W, Ninga, E, Katerelos, N.A, Anssour, S, Dunwell, J.M, Makris, A.M, Goodenough, P.W, Johnson, C.B.
Deposit date:2006-09-14
Release date:2007-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Rational Conversion of Substrate and Product Specificity in a Salvia Monoterpene Synthase: Structural Insights Into the Evolution of Terpene Synthase Function.
Plant Cell, 19, 2007
1EZK
DownloadVisualize
BU of 1ezk by Molmil
Crystal structure of recombinant tryparedoxin I
Descriptor: TRYPAREDOXIN I
Authors:Hofmann, B, Guerrero, S.A, Kalisz, H.M, Menge, U, Nogoceke, E, Montemartini, M, Singh, M, Flohe, L, Hecht, H.J.
Deposit date:2000-05-11
Release date:2000-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of tryparedoxins revealing interaction with trypanothione.
Biol.Chem., 382, 2001
5JR5
DownloadVisualize
BU of 5jr5 by Molmil
RHCC in Complex with Elemental Sulfur
Descriptor: SULFATE ION, Tetrabrachion, octathiocane
Authors:McDougall, M, Meier, M, Stetefeld, J.
Deposit date:2016-05-05
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Archaea S-layer nanotube from a "black smoker" in complex with cyclo-octasulfur (S8 ) rings.
Proteins, 85, 2017
8JRM
DownloadVisualize
BU of 8jrm by Molmil
Solution structure of a 7_1 knotted Q9PR55
Descriptor: Uncharacterized protein UU089.1
Authors:Hsu, S.T.D, Lai, C.H.
Deposit date:2023-06-17
Release date:2024-06-19
Method:SOLUTION NMR
Cite:Solution structure of a 7_1 knotted Q9PR55
To Be Published

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon