Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WA9
DownloadVisualize
BU of 5wa9 by Molmil
Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) H112N mutant nucleoside D-Ala phosphoramidate substrate complex
Descriptor: CHLORIDE ION, Histidine triad nucleotide-binding protein 1, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{R})-1-methoxy-1-oxidanylidene-propan-2-yl]phosphonamidic acid
Authors:Maize, K.M, Finzel, B.C.
Deposit date:2017-06-26
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:A Crystal Structure Based Guide to the Design of Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) Activated ProTides.
Mol. Pharm., 14, 2017
8IE8
DownloadVisualize
BU of 8ie8 by Molmil
Crystal structure of DAPK1 in complex with isorhapontigenin
Descriptor: 5-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]benzene-1,3-diol, Death-associated protein kinase 1, SULFATE ION
Authors:Yokoyama, T.
Deposit date:2023-02-15
Release date:2023-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Characterization of the molecular interactions between resveratrol derivatives and death-associated protein kinase 1.
Febs J., 290, 2023
6GSR
DownloadVisualize
BU of 6gsr by Molmil
Single Particle Cryo-EM map of human Transferrin receptor 1 - H-Ferritin complex at 5.5 Angstrom resolution.
Descriptor: Ferritin heavy chain, Transferrin receptor protein 1
Authors:Testi, C, Montemiglio, L.C, Vallone, B, Des Georges, A, Boffi, A, Mancia, F, Baiocco, P.
Deposit date:2018-06-15
Release date:2019-03-27
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Cryo-EM structure of the human ferritin-transferrin receptor 1 complex.
Nat Commun, 10, 2019
5WHO
DownloadVisualize
BU of 5who by Molmil
Kelch domain of human Keap1 bound to small molecule inhibitor fragment: 4-oxo-4H-1-benzopyran-2-carboxylic acid
Descriptor: 4-oxo-4H-1-benzopyran-2-carboxylic acid, Kelch-like ECH-associated protein 1, SULFATE ION
Authors:Carolan, J.P, Lynch, A.J, Allen, K.N.
Deposit date:2017-07-17
Release date:2018-09-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-Associated Protein 1 (KEAP1) and Nuclear Factor Erythroid 2 Like 2 (Nrf2).
Biochemistry, 59, 2020
6H40
DownloadVisualize
BU of 6h40 by Molmil
High resolution structure of MeT1 from Mycobacterium hassiacum in complex with 3-methoxy-1,2-propanediol.
Descriptor: (2~{S})-3-methoxypropane-1,2-diol, CHLORIDE ION, GLYCEROL, ...
Authors:Pereira, P.J.B, Ripoll-Rozada, J.
Deposit date:2018-07-20
Release date:2019-01-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.053 Å)
Cite:Biosynthesis of mycobacterial methylmannose polysaccharides requires a unique 1-O-methyltransferase specific for 3-O-methylated mannosides.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7MOG
DownloadVisualize
BU of 7mog by Molmil
Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 5-PCF2 Am-InsP5, an analogue of 5-InsP7
Descriptor: (1,1-difluoro-2-oxo-2-{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]amino}ethyl)phosphonic acid, Tyrosine-protein phosphatase DSP1
Authors:Wang, H, Shears, S.B.
Deposit date:2021-05-01
Release date:2022-03-02
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structural expose of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop.
Nat Commun, 13, 2022
6H8J
DownloadVisualize
BU of 6h8j by Molmil
1.45 A resolution of Sporosarcina pasteurii urease inhibited in the presence of NBPTO
Descriptor: 1,2-ETHANEDIOL, DIAMIDOPHOSPHATE, NICKEL (II) ION, ...
Authors:Mazzei, L, Cianci, M, Ciurli, S.
Deposit date:2018-08-02
Release date:2019-06-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Insights into Urease Inhibition by N-( n-Butyl) Phosphoric Triamide through an Integrated Structural and Kinetic Approach.
J.Agric.Food Chem., 67, 2019
8AHY
DownloadVisualize
BU of 8ahy by Molmil
X-ray structure of human NCS-1 bound to Ric-8A
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Munoz-Reyes, D, Sanchez-Barrena, M.J.
Deposit date:2022-07-25
Release date:2023-12-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The neuronal calcium sensor NCS-1 regulates the phosphorylation state and activity of the G alpha chaperone and GEF Ric-8A.
Elife, 12, 2023
8ALH
DownloadVisualize
BU of 8alh by Molmil
X-ray structure of human NCS-1 bound to Ric-8A
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Munoz-Reyes, D, Sanchez-Barrena, M.J.
Deposit date:2022-08-01
Release date:2023-12-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The neuronal calcium sensor NCS-1 regulates the phosphorylation state and activity of the G alpha chaperone and GEF Ric-8A.
Elife, 12, 2023
8ALM
DownloadVisualize
BU of 8alm by Molmil
X-ray structure of human NCS-1 bound to Ric-8A
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Munoz-Reyes, D, Sanchez-Barrena, M.J.
Deposit date:2022-08-01
Release date:2023-12-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85402 Å)
Cite:The neuronal calcium sensor NCS-1 regulates the phosphorylation state and activity of the G alpha chaperone and GEF Ric-8A.
Elife, 12, 2023
8Q8I
DownloadVisualize
BU of 8q8i by Molmil
AO75L in complex with a synthetic trisaccharide acceptor.
Descriptor: (2~{R},3~{S},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methyl-6-octoxy-3-oxidanyl-oxan-4-yl]oxy-6-methyl-oxane-3,4,5-triol, 1,2-ETHANEDIOL, BICINE, ...
Authors:Laugueri, M.E, Speciale, I, Gimeno, A, Sicheng, L, Poveda, A, Lowary, T, Van Etten J, L, Barbero, J, De Castro, C, Tonetti, M, Rojas A, L.
Deposit date:2023-08-18
Release date:2024-08-21
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Unveiling the GT114 family: Structural characterization of A075L, a glycosyltransferase from Paramecium bursaria chlorella virus-1 (PBCV-1).
Protein Sci., 33, 2024
6ZB9
DownloadVisualize
BU of 6zb9 by Molmil
Exo-beta-1,3-glucanase from moose rumen microbiome, wild type
Descriptor: Exo-beta-1,3-glucanase
Authors:Kalyani, D.C, Reichenbach, T, Aspeborg, H, Divne, C.
Deposit date:2020-06-08
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A homodimeric bacterial exo-beta-1,3-glucanase derived from moose rumen microbiome shows a structural framework similar to yeast exo-beta-1,3-glucanases.
Enzyme.Microb.Technol., 143, 2021
3ES4
DownloadVisualize
BU of 3es4 by Molmil
Crystal structure of Protein of unknown function (DUF861) with a RmlC-like cupin fold (17741406) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.64 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, uncharacterized protein DUF861 with a RmlC-like cupin fold
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-10-03
Release date:2008-10-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of Protein of unknown function (DUF861) with a RmlC-like cupin fold (17741406) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.64 A resolution
To be published
6ZEA
DownloadVisualize
BU of 6zea by Molmil
Strictosidine Synthase from Catharanthus roseus in complex with racemic 1-methyl-2,3,4,9-tetrahydro-1H-beta-carboline
Descriptor: (1~{R})-1-methyl-2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole, (1~{S})-1-methyl-2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole, 1,2-ETHANEDIOL, ...
Authors:Eger, E, Sharma, M, Kroutil, W, Grogan, G.
Deposit date:2020-06-16
Release date:2020-09-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Strictosidine Synthase from Catharanthus roseus in complex with racemic 1-methyl-2,3,4,9-tetrahydro-1H-beta-carboline
To Be Published
6P2G
DownloadVisualize
BU of 6p2g by Molmil
Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and D-ddCTP
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA Primer 20-mer, DNA template 27-mer, ...
Authors:Bertoletti, N, Anderson, K.S.
Deposit date:2019-05-21
Release date:2019-07-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural insights into the recognition of nucleoside reverse transcriptase inhibitors by HIV-1 reverse transcriptase: First crystal structures with reverse transcriptase and the active triphosphate forms of lamivudine and emtricitabine.
Protein Sci., 28, 2019
5X79
DownloadVisualize
BU of 5x79 by Molmil
Human GST Pi conjugated with novel inhibitor, GS-ESF
Descriptor: (2S)-2-azanyl-5-[[(2R)-3-(2-fluorosulfonylethylsulfanyl)-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Glutathione S-transferase P
Authors:Tomoike, F, Shishido, Y, Fukui, K, Kimura, Y, Abe, H.
Deposit date:2017-02-24
Release date:2017-09-13
Last modified:2025-09-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A covalent G-site inhibitor for glutathione S-transferase Pi (GSTP1-1).
Chem. Commun. (Camb.), 53, 2017
6OFI
DownloadVisualize
BU of 6ofi by Molmil
CRYSTAL STRUCTURE OF the RV144 C1-C2 SPECIFIC ANTIBODY CH55 FAB IN COMPLEX WITH HIV-1 CLADE A/E GP120
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CH55 Fab heavy chain, CH55 Fab light chain, ...
Authors:Tolbert, W.D, Yan, F, Van, V, Pazgier, M.
Deposit date:2019-03-29
Release date:2020-06-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:Recognition Patterns of the C1/C2 Epitopes Involved in Fc-Mediated Response in HIV-1 Natural Infection and the RV114 Vaccine Trial.
Mbio, 11, 2020
6NNN
DownloadVisualize
BU of 6nnn by Molmil
Xanthomonas citri Dephospho-PGM in complex with glucose-1-phosphate
Descriptor: 1-O-phosphono-alpha-D-glucopyranose, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Stiers, K.M, Beamer, L.J.
Deposit date:2019-01-15
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural and dynamical description of the enzymatic reaction of a phosphohexomutase.
Struct Dyn., 6, 2019
7R4P
DownloadVisualize
BU of 7r4p by Molmil
Structure of human hydroxyacid oxidase 1 bound with 6-amino-1-benzyl-5-(methylamino)pyrimidine-2,4(1H,3H)-dione
Descriptor: 6-amino-1-benzyl-5-(methylamino)pyrimidine-2,4(1H,3H)-dione, FLAVIN MONONUCLEOTIDE, Hydroxyacid oxidase 1
Authors:Mackinnon, S, Bezerra, G.A, Krojer, T, Bradley, A.R, Talon, R, Brandeo-Neto, J, Douangamath, A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Oppermann, U, Brennan, P.E, Yue, W.W.
Deposit date:2022-02-09
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structure of human hydroxyacid oxidase 1 bound with 5-bromo-N-methyl-1H-indazole-3-carboxamide
To Be Published
4YJL
DownloadVisualize
BU of 4yjl by Molmil
Crystal structure of APC-ARM in complexed with Amer1-A2
Descriptor: 1,2-ETHANEDIOL, APC membrane recruitment protein 1, Adenomatous polyposis coli protein
Authors:Zhang, Z, Xiao, Y, Wu, G.
Deposit date:2015-03-03
Release date:2016-03-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the APC-ARM domain in complexes with discrete Amer1/WTX fragments reveal that it uses a consensus mode to recognize its binding partners
Cell Discov, 1, 2015
6HP9
DownloadVisualize
BU of 6hp9 by Molmil
Structure of the kinase domain of human DDR1 in complex with a 2-Amino-2,3-Dihydro-1H-Indene-5-Carboxamide-based inhibitor
Descriptor: (2~{R})-~{N}-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-2-(pyrimidin-5-ylamino)-2,3-dihydro-1~{H}-indene-5-carboxamide, Epithelial discoidin domain-containing receptor 1
Authors:Pinkas, D.M, Fox, A.E, Kupinska, K, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N, Structural Genomics Consortium (SGC)
Deposit date:2018-09-19
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:2-Amino-2,3-dihydro-1H-indene-5-carboxamide-Based Discoidin Domain Receptor 1 (DDR1) Inhibitors: Design, Synthesis, and in Vivo Antipancreatic Cancer Efficacy.
J.Med.Chem., 62, 2019
3FQ2
DownloadVisualize
BU of 3fq2 by Molmil
Azurin C112D/M121F
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION
Authors:Lancaster, K.M, Gray, H.B.
Deposit date:2009-01-06
Release date:2009-11-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Type Zero Copper Proteins.
Nat Chem, 1, 2009
9HN8
DownloadVisualize
BU of 9hn8 by Molmil
Apo Structure of Truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Mycobacterium tuberculosis
Descriptor: 1-deoxy-D-xylulose-5-phosphate synthase
Authors:Gawriljuk, V.O, Groves, M.R.
Deposit date:2024-12-10
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Apo structure of Mycobacterium tuberculosis 1-deoxy-d-xylulose 5-phosphate synthase DXPS: Dynamics and implications for inhibitor design.
Biochem.Biophys.Res.Commun., 747, 2025
3DHB
DownloadVisualize
BU of 3dhb by Molmil
1.4 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at The Catalytic Metal Center
Descriptor: GLYCEROL, N-Acyl Homoserine Lactone Hydrolase, N-hexanoyl-L-homoserine, ...
Authors:Liu, D, Momb, J, Thomas, P.W, Moulin, A, Petsko, G.A, Fast, W, Ringe, D.
Deposit date:2008-06-17
Release date:2008-07-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.
Biochemistry, 47, 2008
5L2N
DownloadVisualize
BU of 5l2n by Molmil
Structure of ALDH1A1 in complex with BUC25
Descriptor: 3-benzyl-4-methyl-2-oxo-2H-1-benzopyran-7-yl methanesulfonate, CHLORIDE ION, Retinal dehydrogenase 1, ...
Authors:Buchman, C.D, Hurley, T.D.
Deposit date:2016-08-02
Release date:2017-03-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inhibition of the Aldehyde Dehydrogenase 1/2 Family by Psoralen and Coumarin Derivatives.
J. Med. Chem., 60, 2017

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon