PDB: 83152 resultsInfo pagesStatus searchChemie searchBIRD

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9B7C	high-resolution ambient temperature structure of lysozyme soaked with sodium iodide Descriptor: GLYCEROL, IODIDE ION, Lysozyme C, ... Authors: Wang, H.K, Greisman, J.B, Hekstra, D.R. Deposit date: 2024-03-27 Release date: 2024-07-31 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Bayesian Priors for Comparative Crystallography To Be Published
9B7B	Crystal structure of humanized 44H10 Fab Version 22 in complex with HLA-DR (HLA-DRA*01:01/HLA-DRB1*04:01) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HLA class II histocompatibility antigen, DR alpha chain, ... Authors: Kassardjian, A, Julien, J.P. Deposit date: 2024-03-27 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (3.08 Å) Cite: Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework. Antibodies, 13, 2024
9B76	Crystal structure of humanized 44H10 Fab Version 21 Descriptor: ACETATE ION, POTASSIUM ION, h44H10-V21 Antibody, ... Authors: Kassardjian, A, Julien, J.P. Deposit date: 2024-03-27 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework. Antibodies, 13, 2024
9B75	Crystal structure of humanized 44H10 Fab Version 17 Descriptor: 1,2-ETHANEDIOL, h44H10-V17 Antibody, heavy chain, ... Authors: Kassardjian, A, Julien, J.P. Deposit date: 2024-03-27 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework. Antibodies, 13, 2024
9B74	Crystal structure of humanized 44H10 Fab Version 14 Descriptor: 1,2-ETHANEDIOL, ACETATE ION, SODIUM ION, ... Authors: Kassardjian, A, Julien, J.P. Deposit date: 2024-03-27 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework. Antibodies, 13, 2024
9B71	Cryo-EM structure of MraY in complex with analogue 3 Descriptor: (2~{S},3~{S})-3-[(2~{S},3~{R},4~{S},5~{R})-5-(aminomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-3-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]-2-[[4-[[[(2~{S})-5-carbamimidamido-2-(hexadecanoylamino)pentanoyl]amino]methyl]phenyl]methylamino]propanoic acid, MraYAA Nanobody, Phospho-N-acetylmuramoyl-pentapeptide-transferase Authors: Hao, A, Lee, S.-Y. Deposit date: 2024-03-26 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Development of a natural product optimization strategy for inhibitors against MraY, a promising antibacterial target. Nat Commun, 15, 2024
9B70	Cryo-EM structure of MraY in complex with analogue 2 Descriptor: (2~{S},3~{S})-3-[(2~{S},3~{R},4~{S},5~{R})-5-(aminomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-2-[[3-[[[(2~{S})-6-azanyl-2-(hexadecanoylamino)hexanoyl]amino]methyl]phenyl]methylamino]-3-[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]propanoic acid, MraYAA nanobody, Phospho-N-acetylmuramoyl-pentapeptide-transferase Authors: Hao, A, Lee, S.-Y. Deposit date: 2024-03-26 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Development of a natural product optimization strategy for inhibitors against MraY, a promising antibacterial target. Nat Commun, 15, 2024
9B6H	Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist TC-I 2014 and the cooling agonist C3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-{7-(trifluoromethyl)-5-[2-(trifluoromethyl)phenyl]-1H-benzimidazol-2-yl}-1-oxa-2-azaspiro[4.5]dec-2-ene, CHOLESTEROL HEMISUCCINATE, ... Authors: Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y. Deposit date: 2024-03-25 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8. Sci Adv, 10, 2024
9B6F	Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMG2850 Descriptor: (8R)-8-[4-(trifluoromethyl)phenyl]-N-[(2S)-1,1,1-trifluoropropan-2-yl]-5,8-dihydro-1,7-naphthyridine-7(6H)-carboxamide, CHOLESTEROL HEMISUCCINATE, Transient receptor potential cation channel subfamily M member 8 Authors: Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y. Deposit date: 2024-03-25 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8. Sci Adv, 10, 2024
9B6A	GluA2 flip Q in complex with TARPgamma2 at pH8, class12, structure of LBD-TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B69	GluA2 flip Q in complex with TARPgamma2 at pH8, class12, structure of NTD Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Flip of Glutamate receptor 2, ... Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.69 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B68	GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of NTD Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Flip of Glutamate receptor 2, ... Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B67	GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of LBD-TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B64	GluA2 flip Q in complex with TARPgamma2 at pH5, class23, structure of LBD-TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.56 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B63	GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B61	GluA2 flip Q in complex with TARPgamma2 at pH5, consensus structure of LBD-TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B60	GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (2.57 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B5Z	GluA2 flip Q in complex with TARPgamma2 at pH8, consensus structure of LBD-TMD-TARPgamma2 Descriptor: Isoform Flip of Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit Authors: Nakagawa, T, Greger, I.H. Deposit date: 2024-03-23 Release date: 2024-07-31 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (2.71 Å) Cite: Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol., 2024
9B5X	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (4.16 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024
9B5W	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 5 (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024
9B5V	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 1 (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.94 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024
9B5U	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024
9B5T	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 5 map and model (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024
9B5S	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 4 map and model (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024
9B5R	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 3 map and model (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Last modified: 2024-09-04 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature, 2024

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