Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZAX
DownloadVisualize
BU of 5zax by Molmil
Crystal structure of thymidylate kinase in complex with ADP, TDP and TMP from thermus thermophilus HB8
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
Deposit date:2018-02-09
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Insights into product release dynamics through structural analyses of thymidylate kinase.
Int. J. Biol. Macromol., 123, 2018
1KTD
DownloadVisualize
BU of 1ktd by Molmil
CRYSTAL STRUCTURE OF CLASS II MHC MOLECULE IEK BOUND TO PIGEON CYTOCHROME C PEPTIDE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion protein consisting of cytochrome C peptide, glycine rich linker, ...
Authors:Fremont, D.H, Dai, S, Chiang, H, Crawford, F, Marrack, P, Kappler, J.
Deposit date:2002-01-15
Release date:2002-05-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of cytochrome c presentation by IE(k).
J.Exp.Med., 195, 2002
1KVS
DownloadVisualize
BU of 1kvs by Molmil
UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
Descriptor: DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Thoden, J.B, Gulick, A.M, Holden, H.M.
Deposit date:1997-03-07
Release date:1998-03-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular structures of the S124A, S124T, and S124V site-directed mutants of UDP-galactose 4-epimerase from Escherichia coli.
Biochemistry, 36, 1997
1KVR
DownloadVisualize
BU of 1kvr by Molmil
UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thoden, J.B, Gulick, A.M, Holden, H.M.
Deposit date:1997-03-07
Release date:1998-03-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular structures of the S124A, S124T, and S124V site-directed mutants of UDP-galactose 4-epimerase from Escherichia coli.
Biochemistry, 36, 1997
1BGG
DownloadVisualize
BU of 1bgg by Molmil
GLUCOSIDASE A FROM BACILLUS POLYMYXA COMPLEXED WITH GLUCONATE
Descriptor: BETA-GLUCOSIDASE A, D-gluconic acid
Authors:Sanz-Aparicio, J, Hermoso, J, Martinez-Ripoll, M, Polaina, J.
Deposit date:1997-05-12
Release date:1998-05-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of beta-glucosidase A from Bacillus polymyxa: insights into the catalytic activity in family 1 glycosyl hydrolases.
J.Mol.Biol., 275, 1998
7LRT
DownloadVisualize
BU of 7lrt by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS-CoV-2 spike glycoprotein, ...
Authors:Zhou, T, Tsybovsky, T.
Deposit date:2021-02-17
Release date:2021-07-14
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.
Science, 373, 2021
1B5Z
DownloadVisualize
BU of 1b5z by Molmil
CONTRIBUTION OF HYDROGEN BONDS TO THE CONFORMATIONAL STABILITY OF HUMAN LYSOZYME: CALORIMETRY AND X-RAY ANALYSIS OF SIX SER->ALA MUTANTS
Descriptor: LYSOZYME
Authors:Takano, K, Yamagata, Y, Kubota, M, Funahashi, J, Fujii, S, Yutani, K.
Deposit date:1999-01-11
Release date:1999-02-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six Ser --> Ala mutants.
Biochemistry, 38, 1999
1TY9
DownloadVisualize
BU of 1ty9 by Molmil
X-RAY CRYSTAL STRUCTURE OF PHZG FROM PSEUDOMONAS FLUORESCENS
Descriptor: FLAVIN MONONUCLEOTIDE, Phenazine biosynthesis protein phzG, SULFATE ION
Authors:Parsons, J.F, Eisenstein, E, Ladner, J.E.
Deposit date:2004-07-07
Release date:2004-11-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the phenazine biosynthesis enzyme PhzG.
Acta Crystallogr.,Sect.D, 60, 2004
7LS3
DownloadVisualize
BU of 7ls3 by Molmil
Co-complex CYP46A1 with 8114 (3f)
Descriptor: (5-methyl-2-pyridin-4-yl-phenyl)-[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]methanone, Cholesterol 24-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lane, W, Yano, J.
Deposit date:2021-02-17
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of Soticlestat, a Potent and Selective Inhibitor for Cholesterol 24-Hydroxylase (CH24H).
J.Med.Chem., 64, 2021
7LRL
DownloadVisualize
BU of 7lrl by Molmil
Co-complex CYP46A1 with 7742 (Soticlestat/TAK-935))
Descriptor: Cholesterol 24-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, [4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]-(2-pyridin-4-ylpyridin-3-yl)methanone
Authors:Lane, W, Yano, J.
Deposit date:2021-02-16
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.995 Å)
Cite:Discovery of Soticlestat, a Potent and Selective Inhibitor for Cholesterol 24-Hydroxylase (CH24H).
J.Med.Chem., 64, 2021
7LS4
DownloadVisualize
BU of 7ls4 by Molmil
Co-complex CYP46A1 with 9129 (1b)
Descriptor: Cholesterol 24-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, [5,5-dimethyl-3-(2-methylphenyl)-4~{H}-pyrazol-1-yl]-pyridin-4-yl-methanone
Authors:Lane, W, Yano, J.
Deposit date:2021-02-17
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of Soticlestat, a Potent and Selective Inhibitor for Cholesterol 24-Hydroxylase (CH24H).
J.Med.Chem., 64, 2021
5WGD
DownloadVisualize
BU of 5wgd by Molmil
Estrogen Receptor Alpha Ligand Binding Domain in Complex with Estradiol and SRC2-LP1
Descriptor: (ACE)AILHKLLQDS(NH2), (ACE)HKILHKLLQDS(NH2), ESTRADIOL, ...
Authors:Fanning, S.W, Speltz, T.E, Mayne, C.G, Siddiqui, Z, Greene, G.L, Tajkhorshid, E, Moore, T.W.
Deposit date:2017-07-14
Release date:2018-06-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A "cross-stitched" peptide with improved helicity and proteolytic stability.
Org. Biomol. Chem., 16, 2018
5ZW9
DownloadVisualize
BU of 5zw9 by Molmil
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Deka, G, Benazir, J.F, Kalyani, J.N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2018-05-14
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
Febs J., 286, 2019
4MPU
DownloadVisualize
BU of 4mpu by Molmil
Human beta-tryptase co-crystal structure with (6S,8R)-N,N'-bis[3-({4-[3-(aminomethyl)phenyl]piperidin-1-yl}carbonyl)phenyl]-8-hydroxy-6-(1-hydroxycyclobutyl)-5,7-dioxaspiro[3.4]octane-6,8-dicarboxamide
Descriptor: (6S,8R)-N,N'-bis[3-({4-[3-(aminomethyl)phenyl]piperidin-1-yl}carbonyl)phenyl]-8-hydroxy-6-(1-hydroxycyclobutyl)-5,7-dioxaspiro[3.4]octane-6,8-dicarboxamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, ...
Authors:White, A, Stein, A.J, Suto, R.K.
Deposit date:2013-09-13
Release date:2015-03-18
Last modified:2019-09-25
Method:X-RAY DIFFRACTION (1.649 Å)
Cite:Target-Directed Self-Assembly of Homodimeric Drugs Against beta-Tryptase.
Acs Med.Chem.Lett., 9, 2018
1QAE
DownloadVisualize
BU of 1qae by Molmil
THE ACTIVE SITE OF SERRATIA ENDONUCLEASE CONTAINS A CONSERVED MAGNESIUM-WATER CLUSTER
Descriptor: MAGNESIUM ION, PROTEIN (EXTRACELLULAR ENDONUCLEASE)
Authors:Miller, M.D, Krause, K.L.
Deposit date:1999-03-03
Release date:1999-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The active site of Serratia endonuclease contains a conserved magnesium-water cluster.
J.Mol.Biol., 288, 1999
7P76
DownloadVisualize
BU of 7p76 by Molmil
Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions, Schiff base complex with cinnamaldehyde
Descriptor: (2E)-3-phenylprop-2-enal, Deoxyribose-phosphate aldolase, GLYCEROL
Authors:Thunnissen, A.M.W.H, Rozeboom, H.J, Kunzendorf, A, Poelarends, G.J.
Deposit date:2021-07-19
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Unlocking Asymmetric Michael Additions in an Archetypical Class I Aldolase by Directed Evolution.
Acs Catalysis, 11, 2021
7OJT
DownloadVisualize
BU of 7ojt by Molmil
Crystal structure of unliganded PatA, a membrane associated acyltransferase from Mycobacterium smegmatis
Descriptor: GLYCEROL, Phosphatidylinositol mannoside acyltransferase
Authors:Anso, I, Wang, L, Marina, A, Paez-Perez, E.D, Perrone, S, Lowary, T.L, Trastoy, B, Guerin, M.E.
Deposit date:2021-05-17
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.67 Å)
Cite:Molecular ruler mechanism and interfacial catalysis of the integral membrane acyltransferase PatA.
Sci Adv, 7, 2021
1QFT
DownloadVisualize
BU of 1qft by Molmil
HISTAMINE BINDING PROTEIN FROM FEMALE BROWN EAR RHIPICEPHALUS APPENDICULATUS
Descriptor: HISTAMINE, PROTEIN (FEMALE-SPECIFIC HISTAMINE BINDING PROTEIN 2)
Authors:Paesen, G.C, Adams, P.L, Harlos, K, Nuttal, P.A, Stuart, D.I.
Deposit date:1999-04-14
Release date:2000-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Tick histamine-binding proteins: isolation, cloning, and three-dimensional structure.
Mol.Cell, 3, 1999
7P75
DownloadVisualize
BU of 7p75 by Molmil
Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions in substrate-free state
Descriptor: Deoxyribose-phosphate aldolase
Authors:Thunnissen, A.M.W.H, Rozeboom, H.J, Kunzendorf, A, Poelarends, G.J.
Deposit date:2021-07-19
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Unlocking Asymmetric Michael Additions in an Archetypical Class I Aldolase by Directed Evolution.
Acs Catalysis, 11, 2021
1QMJ
DownloadVisualize
BU of 1qmj by Molmil
CG-16, a homodimeric agglutinin from chicken liver
Descriptor: BETA-GALACTOSIDE-BINDING LECTIN, BETA-MERCAPTOETHANOL
Authors:Varela, P.F, Solis, D, Diaz-Maurino, T, Kaltner, H, Gabius, H.-J, Romero, A.
Deposit date:1999-09-29
Release date:2000-02-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The 2.15 A Crystal Structure of Cg-16, the Developmentally Regulated Homodimeric Chicken Galectin
J.Mol.Biol., 294, 1999
5ZWA
DownloadVisualize
BU of 5zwa by Molmil
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with ADP, PL-linked to Lys233 via Schiff base in protomer A and the product (PLP) in protomer B
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Deka, G, Benazir, J.F, Kalyani, J.N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2018-05-14
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
Febs J., 286, 2019
4XI1
DownloadVisualize
BU of 4xi1 by Molmil
Crystal structure of U-box 2 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris, wild-type
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase LubX, GLYCEROL, ...
Authors:Stogios, P.J, Quaile, T, Skarina, T, Cuff, M, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-01-06
Release date:2015-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.983 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
1BUU
DownloadVisualize
BU of 1buu by Molmil
ONE HO3+ FORM OF RAT MANNOSE-BINDING PROTEIN A
Descriptor: HOLMIUM ATOM, PROTEIN (MANNOSE-BINDING PROTEIN A)
Authors:Ng, K.K.-S, Park-Snyder, S, Weis, W.I.
Deposit date:1998-09-06
Release date:1998-09-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ca2+-dependent structural changes in C-type mannose-binding proteins.
Biochemistry, 37, 1998
2A8C
DownloadVisualize
BU of 2a8c by Molmil
Haemophilus influenzae beta-carbonic anhydrase
Descriptor: Carbonic anhydrase 2, SULFATE ION, ZINC ION
Authors:Cronk, J.D, Rowlett, R.S, Zhang, K.Y.J, Tu, C, Endrizzi, J.A, Lee, J, Gareiss, P.C, Preiss, J.R.
Deposit date:2005-07-07
Release date:2006-04-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification of a Novel Noncatalytic Bicarbonate Binding Site in Eubacterial beta-Carbonic Anhydrase
Biochemistry, 45, 2006
2A8D
DownloadVisualize
BU of 2a8d by Molmil
Haemophilus influenzae beta-carbonic anhydrase complexed with bicarbonate
Descriptor: BICARBONATE ION, Carbonic anhydrase 2, SULFATE ION, ...
Authors:Cronk, J.D, Rowlett, R.S, Zhang, K.Y.J, Tu, C, Endrizzi, J.A, Lee, J, Gareiss, P.C, Preiss, J.R.
Deposit date:2005-07-07
Release date:2006-04-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of a Novel Noncatalytic Bicarbonate Binding Site in Eubacterial beta-Carbonic Anhydrase
Biochemistry, 45, 2006

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon