PDB: 532 resultsInfo pagesStatus searchChemie searchBIRD

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3RYP	Domain-domain flexibility leads to allostery within the camp receptor protein (CRP) Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, GLYCEROL Authors: Knapp, J, White, M.A, Lee, J.C. Deposit date: 2011-05-11 Release date: 2012-05-02 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Domain-Domain Flexibility Leads to Allostery within the Cam Receptor Protein (Crp) To be Published
3RYR	Domain-domain flexibility leads to allostery within the camp receptor protein (CRP) Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator Authors: Knapp, J, White, M.A, Lee, J.C. Deposit date: 2011-05-11 Release date: 2012-05-02 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Domain-Domain Flexibility Leads to Allostery within the Cam Receptor Protein (Crp) To be Published
2WC2	Nmr structure of catabolite activator protein in the unliganded state Descriptor: CATABOLITE GENE ACTIVATOR Authors: Popovych, N, Tzeng, S.R, Kalodimos, C.G. Deposit date: 2009-03-06 Release date: 2009-04-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Basis for Camp-Mediated Allosteric Control of the Catabolite Activator Protein. Proc.Natl.Acad.Sci.USA, 106, 2009
2JXH	Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida Descriptor: Proline dehydrogenase Authors: Halouska, S, Zhou, Y, Becker, D, Powers, R. Deposit date: 2007-11-19 Release date: 2008-10-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex Proteins, 75, 2008
2JXG	Solution Structure of the DNA Binding domain of Proline Utilization A (PutA) Descriptor: Proline dehydrogenase Authors: Halouska, S, Zhou, Y, Becker, D, Powers, R. Deposit date: 2007-11-19 Release date: 2008-02-19 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex Proteins, 75, 2008
3FL6	Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) Descriptor: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', COBALT HEXAMMINE(III) Authors: Robeyns, K, Herdewijn, P, Van Meervelt, L. Deposit date: 2008-12-18 Release date: 2009-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.17 Å) Cite: Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA. Artif DNA PNA XNA, 1, 2010
1X95	Solution structure of the DNA-hexamer ATGCAT complexed with DNA Bis-intercalating Anticancer Drug XR5944 (MLN944) Descriptor: 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM, 5'-D(*AP*TP*GP*CP*AP*T)-3' Authors: Dai, J, Punchihewa, C, Mistry, P, Ooi, A.T, Yang, D. Deposit date: 2004-08-19 Release date: 2004-09-28 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Novel DNA bis-intercalation by MLN944, a potent clinical bisphenazine anticancer drug. J.Biol.Chem., 279, 2004
1NGT	The Role of Minor Groove Functional Groups in DNA Hydration Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(MTR)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION Authors: Woods, K.K, Lan, T, McLaughlin, L.W, Williams, L.D. Deposit date: 2002-12-17 Release date: 2003-03-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.04 Å) Cite: The Role of Minor Groove Functional Groups in DNA Hydration Nucleic Acids Res., 31, 2003
1VTT	GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG) Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') Authors: Ho, P.S, Frederick, C.A, Quigley, G.J, Van Der Marel, G.A, Van Boom, J.H, Wang, A.H.-J, Rich, A. Deposit date: 1988-08-18 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1 Å) Cite: GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG) Embo J., 4, 1985
2GZW	Crystal structure of the E.coli CRP-cAMP complex Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator Authors: Kumarevel, T.S, Tanaka, T, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-05-12 Release date: 2007-05-15 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal structure of activated CRP protein from E coli To be Published
3Q61	3'-Fluoro Hexitol Nucleic Acid DNA Structure Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(F3H)P*AP*CP*GP*C)-3') Authors: Seth, P.R, Allerson, C.R, Prakash, T.P, Siwkowski, A, Berdeja, A, Yu, J, Pallan, P.S, Watt, A.T, Gaus, H, Bhat, B, Egli, M, Swayze, E.E. Deposit date: 2010-12-30 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Synthesis, improved antisense activity and structural rationale for the divergent RNA affinities of 3'-fluoro hexitol nucleic acid (FHNA and Ara-FHNA) modified oligonucleotides. J.Am.Chem.Soc., 133, 2011
2V8G	Crystal structure of beta-alanine synthase from Saccharomyces kluyveri in complex with the product beta-alanine Descriptor: BETA-ALANINE, BETA-ALANINE SYNTHASE, BICINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-07 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8V	Crystal structure of mutant R322A of beta-alanine synthase from Saccharomyces kluyveri Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, BETA-ALANINE SYNTHASE, N-(AMINOCARBONYL)-BETA-ALANINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-15 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8D	Crystal structure of mutant E159A of beta-alanine synthase from Saccharomyces kluyveri Descriptor: BETA-ALANINE SYNTHASE, ZINC ION Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-07 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8H	Crystal structure of mutant E159A of beta-alanine synthase from Saccharomyces kluyveri in complex with its substrate N-carbamyl-beta- alanine Descriptor: BETA-ALANINE SYNTHASE, BICINE, N-(AMINOCARBONYL)-BETA-ALANINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-08 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
1JIH	Yeast DNA Polymerase ETA Descriptor: DNA Polymerase ETA Authors: Trincao, J, Johnson, R.E, Escalante, C.R, Prakash, S, Prakash, L, Aggarwal, A.K. Deposit date: 2001-07-02 Release date: 2002-01-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis Mol.Cell, 8, 2001
101D	REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN Authors: Goodsell, D.S, Kopka, M.L, Dickerson, R.E. Deposit date: 1994-12-14 Release date: 1995-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation. Biochemistry, 34, 1995
113D	THE STRUCTURE OF GUANOSINE-THYMIDINE MISMATCHES IN B-DNA AT 2.5 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*TP*GP*CP*G)-3') Authors: Hunter, W.N, Brown, T, Kneale, G, Anand, N.N, Rabinovich, D, Kennard, O. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structure of guanosine-thymidine mismatches in B-DNA at 2.5-A resolution. J.Biol.Chem., 262, 1987
1Z5T	Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I. Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(ZDU)P*(ZDU)P*CP*GP*CP*G)-3', SPERMINE, THALLIUM (I) ION Authors: Moulaei, T, Maehigashi, T, Lountos, G.T, Komeda, S, Watkins, D, Stone, M.P, Marky, L.A, Li, J.S, Gold, B, Williams, L.D. Deposit date: 2005-03-19 Release date: 2005-07-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of B-DNA with cations tethered in the major groove. Biochemistry, 44, 2005
1A9G	APURINIC DNA WITH BOUND WATER AT THE DAMAGED SITE AND N3 OF CYTOSINE, BETA FORM, NMR, 1 STRUCTURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*CP*TP*CP*GP*CP*G)-3') Authors: Beger, R.D, Bolton, P.H. Deposit date: 1998-04-06 Release date: 1998-07-15 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
1A9H	APURINIC DNA WITH BOUND WATER AT THE DAMAGED SITE AND O2 OF CYTOSINE, BETA FORM, NMR, 1 STRUCTURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*CP*TP*CP*GP*CP*G)-3') Authors: Beger, R.D, Bolton, P.H. Deposit date: 1998-04-06 Release date: 1998-07-15 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
179D	SOLUTION STRUCTURE OF THE D(T-C-G-A) DUPLEX AT ACIDIC PH: A PARALLEL-STRANDED HELIX CONTAINING C+.C, G.G AND A.A PAIRS Descriptor: DNA (5'-D(*TP*CP*GP*A)-3') Authors: Wang, Y, Patel, D.J. Deposit date: 1994-06-15 Release date: 1994-07-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the d(T-C-G-A) duplex at acidic pH. A parallel-stranded helix containing C+ .C, G.G and A.A pairs. J.Mol.Biol., 242, 1994
1A9I	APYRIMIDINIC DNA WITH BOUND WATER AT THE DAMAGED SITE, ALPHA FORM, NMR, 1 STRUCTURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') Authors: Beger, R.D, Bolton, P.H. Deposit date: 1998-04-06 Release date: 1998-07-15 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
1A9J	APYRIMIDINIC DNA WITH BOUND WATER AT THE DAMAGED SITE, BETA FORM, NMR, 1 STRUCTURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') Authors: Beger, R.D, Bolton, P.H. Deposit date: 1998-04-06 Release date: 1998-07-15 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
5ITT	Crystal Structure of Human NEIL1 bound to duplex DNA containing THF Descriptor: DNA (26-MER), Endonuclease 8-like 1, GLYCEROL Authors: Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C. Deposit date: 2016-03-17 Release date: 2016-07-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair Proc.Natl.Acad.Sci.USA, 113, 2016

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