PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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7JS1	Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J33 immobile Holliday junction with R3 symmetry Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*TP*TP*GP*AP*CP*GP*AP*GP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*C)-3'), DNA (5'-D(P*AP*GP*TP*CP*TP*GP*C)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-08-13 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.152 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
7JS2	Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J36 immobile Holliday junction with R3 symmetry Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*G)-3'), DNA (5'-D(P*CP*GP*TP*CP*TP*GP*C)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-08-13 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.058 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
7JLC	Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J21 immobile Holliday junction with R3 symmetry Descriptor: DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*TP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*C)-3'), DNA (5'-D(P*AP*CP*GP*TP*CP*A)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-07-29 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.06 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
7JPA	Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J5 immobile Holliday junction Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*CP*GP*AP*CP*GP*GP*GP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*C)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*G)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-08-07 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.164 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
7JOH	Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J31 immobile Holliday junction Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*GP*GP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*G)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*T)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-08-06 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (4.195 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
7JPC	Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J7 immobile Holliday junction Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*GP*GP*TP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*A)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*T)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-08-07 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
7JLE	Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J23 immobile Holliday junction with R3 symmetry Descriptor: DNA (5'-D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*AP*CP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*G)-3'), DNA (5'-D(P*GP*TP*GP*TP*CP*GP*T)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-07-29 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.017 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6WZ9	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin Descriptor: DNA, Histone H2A, Histone H2B 1.1, ... Authors: Halic, M, Bilokapic, S. Deposit date: 2020-05-13 Release date: 2020-09-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
7JP8	Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J10 immobile Holliday junction Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-08-07 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.103 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
1AN2	RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN Descriptor: DNA (5'-D(*GP*TP*GP*TP*AP*GP*GP*TP*CP*AP*CP*GP*TP*GP*AP*CP*C P*TP*AP*CP*AP*C)- 3'), PROTEIN (TRANSCRIPTION FACTOR MAX (TF MAX)) Authors: Ferre-D'Amare, A.R, Prendergast, G.C, Ziff, E.B, Burley, S.K. Deposit date: 1996-09-06 Release date: 1997-09-17 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature, 363, 1993
6U40	Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry Descriptor: CACODYLATE ION, DNA (5'-D(*CP*AP*CP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*G)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2019-08-22 Release date: 2020-08-26 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.702 Å) Cite: A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
6UDN	Crystal Structure of a Self-Assembling DNA Scaffold Containing TA Sticky Ends and Rhombohedral Symmetry Descriptor: ARSENIC, DNA (5'-D(*TP*AP*CP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*AP*TP*CP*AP*GP*AP*TP*G)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2019-09-19 Release date: 2020-09-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.602 Å) Cite: A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
1OWO	DATA4:photoreduced DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2 Descriptor: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION Authors: Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. Deposit date: 2003-03-28 Release date: 2004-04-13 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
3J9X	A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA Descriptor: DNA, coat protein Authors: DiMaio, F, Yu, X, Rensen, E, Krupovic, M, Prangishvili, D, Egelman, E. Deposit date: 2015-03-21 Release date: 2015-06-03 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: A virus that infects a hyperthermophile encapsidates A-form DNA. Science, 348, 2015
8IKD	Structure of DNA binding domain of McrBC endonuclease bound to DNA: Y41F-L68Y double mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-28 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IK8	Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68F mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-28 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
6ZXP	Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20 fused to a short peptide from the viral DNA polymerase E9. Descriptor: DNA polymerase processivity factor component A20,DNA polymerase processivity factor component E9 Authors: Bersch, B, Tarbouriech, N, Burmeister, W, Iseni, F. Deposit date: 2020-07-30 Release date: 2021-05-19 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor. J.Mol.Biol., 433, 2021
1D85	STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX Descriptor: DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3'), NETROPSIN Authors: Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. Deposit date: 1992-08-24 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry, 31, 1992
1CY0	COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, DNA TOPOISOMERASE I Authors: Feinberg, H, Changela, A, Mondragon, A. Deposit date: 1999-08-31 Release date: 2000-03-08 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Protein-nucleotide interactions in E. coli DNA topoisomerase I. Nat.Struct.Biol., 6, 1999
5IXA	HCMV DNA polymerase processivity subunit UL44 at neutral pH and low salt Descriptor: DNA polymerase processivity factor Authors: Chen, H, Coen, D.M, Hogle, J.M, Filman, D.J. Deposit date: 2016-03-23 Release date: 2016-11-30 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.684 Å) Cite: A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions. ACS Infect Dis, 3, 2017
111D	CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*GP*GP*CP*G)-3') Authors: Brown, T, Leonard, G.A, Booth, E.D, Chambers, J. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs. J.Mol.Biol., 207, 1989
112D	MOLECULAR STRUCTURE OF THE G.A BASE PAIR IN DNA AND ITS IMPLICATIONS FOR THE MECHANISM OF TRANSVERSION MUTATIONS Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*AP*GP*CP*G)-3') Authors: Brown, T, Hunter, W.N, Kneale, G, Kennard, O. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations. Proc.Natl.Acad.Sci.USA, 83, 1986
7BCB	Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to IR3 DNA Descriptor: DNA (5'-D(*TP*AP*AP*TP*GP*TP*CP*AP*AP*AP*TP*AP*TP*TP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*AP*AP*TP*AP*TP*TP*TP*GP*AP*CP*AP*TP*TP*A)-3'), KORA domain-containing protein Authors: Fernandez-Lopez, R, Boer, D.R, Moncalian, G. Deposit date: 2020-12-19 Release date: 2022-01-12 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis of direct and inverted DNA sequence repeat recognition by helix-turn-helix transcription factors. Nucleic Acids Res., 50, 2022
7BCA	Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to a direct-repeat DNA element Descriptor: DNA (5'-D(*GP*TP*AP*TP*TP*GP*AP*CP*AP*CP*CP*TP*AP*TP*TP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*AP*AP*TP*AP*GP*GP*TP*GP*TP*CP*AP*AP*TP*AP*C)-3'), KORA domain-containing protein Authors: Fernandez-Lopez, R, Boer, D.R, Moncalian, G. Deposit date: 2020-12-18 Release date: 2022-07-13 Last modified: 2022-12-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis of direct and inverted DNA sequence repeat recognition by helix-turn-helix transcription factors. Nucleic Acids Res., 50, 2022
8IJO	Structure of DNA binding domain of McrBC endonuclease bound to DNA: Y41F-L68F double mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-27 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published

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