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2WDV
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BU of 2wdv by Molmil
E. coli succinate:quinone oxidoreductase (SQR) with an empty quinone- binding pocket
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ruprecht, J, Yankovskaya, V, Maklashina, E, Iwata, S, Cecchini, G.
Deposit date:2009-03-26
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of Escherichia Coli Succinate:Quinone Oxidoreductase with an Occupied and Empty Quinone- Binding Site.
J.Biol.Chem., 284, 2009
5DDC
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BU of 5ddc by Molmil
Menin in complex with MI-2-3
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 6-(2,2,2-trifluoroethyl)-4-{4-[5-(trifluoromethyl)-1,3,4-thiadiazol-2-yl]piperazin-1-yl}thieno[2,3-d]pyrimidine, DI(HYDROXYETHYL)ETHER, ...
Authors:Pollock, J, Dmitry, B, Cierpicki, T, Grembecka, J.
Deposit date:2015-08-24
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Rational Design of Orthogonal Multipolar Interactions with Fluorine in Protein-Ligand Complexes.
J.Med.Chem., 58, 2015
4L6O
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BU of 4l6o by Molmil
Crystal structure of the Candida albicans Methionine Synthase in complex with Glutamine
Descriptor: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, GLUTAMINE, ZINC ION
Authors:Ubhi, D, Robertus, J.D.
Deposit date:2013-06-12
Release date:2014-03-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural analysis of a fungal methionine synthase with substrates and inhibitors.
J.Mol.Biol., 426, 2014
4FKZ
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BU of 4fkz by Molmil
Crystal structure of Bacillus subtilis UDP-GlcNAc 2-epimerase in complex with UDP-GlcNAc and UDP
Descriptor: UDP-N-acetylglucosamine 2-epimerase, URIDINE-5'-DIPHOSPHATE, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Authors:Yang, C.S, Chen, S.C, Kuan, S.M, Chen, Y.R, Liu, Y.H, Chen, Y.
Deposit date:2012-06-14
Release date:2013-05-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of Bacillus subtilis UDP-GlcNAc 2-epimerase in complex with UDP-GlcNAc and UDP
To be Published
4FEW
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BU of 4few by Molmil
Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP2
Descriptor: 1-TERT-BUTYL-3-(4-CHLORO-PHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE, ACETATE ION, Aminoglycoside 3'-phosphotransferase AphA1-IAB, ...
Authors:Stogios, P.J, Evdokimova, E, Wawrzak, Z, Minasov, G, Egorova, O, Di Leo, R, Shakya, T, Spanogiannopoulos, P, Wright, G.D, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-05-30
Release date:2012-06-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance.
Biochem.J., 454, 2013
4L77
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BU of 4l77 by Molmil
P450cin Active Site Water: Implications for Substrate Binding and Solvent Accessibility
Descriptor: 1,3,3-TRIMETHYL-2-OXABICYCLO[2.2.2]OCTANE, DI(HYDROXYETHYL)ETHER, P450cin, ...
Authors:Madrona, Y, Poulos, T.L.
Deposit date:2013-06-13
Release date:2013-07-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:P450cin active site water: implications for substrate binding and solvent accessibility.
Biochemistry, 52, 2013
4LHT
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BU of 4lht by Molmil
Crystal Structure of P450cin Y81F mutant, crystallized in 3 mM 1,8-cineole
Descriptor: 1,3,3-TRIMETHYL-2-OXABICYCLO[2.2.2]OCTANE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Madrona, Y, Poulos, T.L.
Deposit date:2013-07-01
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.137 Å)
Cite:P450cin active site water: implications for substrate binding and solvent accessibility.
Biochemistry, 52, 2013
2YBS
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BU of 2ybs by Molmil
JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41)
Descriptor: (2S)-2-HYDROXYPENTANEDIOIC ACID, GLYCEROL, HISTONE H3.1T, ...
Authors:Chowdhury, R, Schofield, C.J.
Deposit date:2011-03-10
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases.
EMBO Rep., 12, 2011
2YCQ
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BU of 2ycq by Molmil
Crystal structure of checkpoint kinase 2 in complex with inhibitor PV1115
Descriptor: N-{4-[(1E)-N-1H-IMIDAZOL-2-YLETHANEHYDRAZONOYL]PHENYL}-7-NITRO-1H-INDOLE-2-CARBOXAMIDE, NITRATE ION, SERINE/THREONINE-PROTEIN KINASE CHK2
Authors:Lountos, G.T, Jobson, A.G, Tropea, J.E, Self, C.R, Pommier, Y, Shoemaker, R.H, Zhang, G, Waugh, D.S.
Deposit date:2011-03-16
Release date:2011-11-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Characterization of Inhibitor Complexes with Checkpoint Kinase 2 (Chk2), a Drug Target for Cancer Therapy.
J.Struct.Biol., 176, 2011
5GU1
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BU of 5gu1 by Molmil
Crystal structure of Au(L).CL-apo-E45C/R52C-rHLFr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Maity, B, Abe, S, Ueno, T.
Deposit date:2016-08-24
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Observation of gold sub-nanocluster nucleation within a crystalline protein cage
Nat Commun, 8, 2017
7QTI
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BU of 7qti by Molmil
SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, P2G3 Heavy Chain, ...
Authors:Ni, D, Lau, K, Turelli, P, Fenwick, C, Perez, L, Pojer, F, Stahlberg, H, Pantaleo, G, Trono, D.
Deposit date:2022-01-14
Release date:2022-08-03
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Patient-derived monoclonal antibody neutralizes SARS-CoV-2 Omicron variants and confers full protection in monkeys.
Nat Microbiol, 7, 2022
7QUP
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BU of 7qup by Molmil
D. melanogaster 13-protofilament microtubule
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Wagstaff, J, Planelles-Herrero, V.J, Derivery, E, Lowe, J.
Deposit date:2022-01-18
Release date:2022-11-02
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Diverse cytomotive actins and tubulins share a polymerization switch mechanism conferring robust dynamics.
Sci Adv, 9, 2023
2WDR
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BU of 2wdr by Molmil
E. coli succinate:quinone oxidoreductase (SQR) with pentachlorophenol bound
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ruprecht, J, Yankovskaya, V, Maklashina, E, Iwata, S, Cecchini, G.
Deposit date:2009-03-25
Release date:2009-08-25
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of Escherichia Coli Succinate:Quinone Oxidoreductase with an Occupied and Empty Quinone- Binding Site.
J.Biol.Chem., 284, 2009
1NNF
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BU of 1nnf by Molmil
Crystal Structure Analysis of Haemophlius Influenzae Ferric-ion Binding Protein H9Q Mutant Form
Descriptor: FE (III) ION, Iron-utilization periplasmic protein, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
Authors:Shouldice, S.R, Dougan, D.R, Skene, R.J, Tari, L.W, McRee, D.E, Yu, R.-H, Schryvers, A.B.
Deposit date:2003-01-13
Release date:2003-04-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High Resolution Structure of an Alternate Form of the Ferric ion Binding Protein from Haemophilus influenzae
J.Biol.Chem., 278, 2003
3FSR
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BU of 3fsr by Molmil
Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of T. brockii ADH by C. beijerinckii ADH
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NADP-dependent alcohol dehydrogenase, ...
Authors:Frolow, F, Greenblatt, H, Goihberg, E, Burstein, Y.
Deposit date:2009-01-11
Release date:2010-01-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms
Biochemistry, 49, 2010
1NNS
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BU of 1nns by Molmil
L-asparaginase of E. coli in C2 space group and 1.95 A resolution
Descriptor: ASPARTIC ACID, L-asparaginase II
Authors:Sanches, M, Barbosa, J.A.R.G, de Oliveira, R.T, Neto, J.A.A, Polikarpov, I.
Deposit date:2003-01-14
Release date:2003-03-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural comparison of Escherichia coli L-asparaginase in two monoclinic space groups.
Acta Crystallogr.,Sect.D, 59, 2003
4FO2
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BU of 4fo2 by Molmil
Heat-labile enterotoxin LT-IIb-B5(T13I) mutant
Descriptor: ACETATE ION, Heat-labile enterotoxin IIB, B chain, ...
Authors:Cody, V, Pace, J, Nawar, H, Liang, S, Connell, T, Hajishengallis, G.
Deposit date:2012-06-20
Release date:2012-11-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-activity correlations of variant forms of the B pentamer of Escherichia coli type II heat-labile enterotoxin LT-IIb with Toll-like receptor 2 binding.
Acta Crystallogr.,Sect.D, 68, 2012
8V99
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BU of 8v99 by Molmil
GII.26 Leon 4509 norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Capsid protein VP1, ...
Authors:Kher, G, Reese, T, Pancera, M, Hansman, G.
Deposit date:2023-12-07
Release date:2024-06-19
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
3B9Y
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BU of 3b9y by Molmil
Crystal structure of the Nitrosomonas europaea Rh protein
Descriptor: Ammonium transporter family Rh-like protein, UNKNOWN LIGAND, octyl beta-D-glucopyranoside
Authors:Li, X, Jayachandran, S, Nguyen, H.-H.T, Chan, M.K.
Deposit date:2007-11-07
Release date:2007-12-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the Nitrosomonas europaea Rh protein.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4KXY
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BU of 4kxy by Molmil
Human transketolase in complex with ThDP analogue (R)-2-(1,2-dihydroxyethyl)-3-deaza-ThDP
Descriptor: 1,2-ETHANEDIOL, 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate, CALCIUM ION, ...
Authors:Neumann, P, Luedtke, S, Erixon, K.M, Leeper, F, Kluger, R, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
3FS1
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BU of 3fs1 by Molmil
Crystal structure of HNF4a LBD in complex with the ligand and the coactivator PGC-1a fragment
Descriptor: Hepatocyte nuclear factor 4-alpha, MYRISTIC ACID, PPARgamma Coactivator-1a (PGC-1a)
Authors:Rha, G, Wu, G, Chi, Y.
Deposit date:2009-01-08
Release date:2009-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Multiple binding modes between HNF4alpha and the LXXLL motifs of PGC-1alpha lead to full activation
J.Biol.Chem., 284, 2009
4FPS
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BU of 4fps by Molmil
tRNA-Guanine Transglycosylase in complex with adamantyl-substituted lin-benzoguanine ligand
Descriptor: 6-amino-2-(methylamino)-4-(2-{[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-ylmethyl]amino}ethyl)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one, GLYCEROL, Queuine tRNA-ribosyltransferase, ...
Authors:Immekus, F, Klebe, G.
Deposit date:2012-06-22
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Studies on TGT homodimer interface
To be Published
7Q6L
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BU of 7q6l by Molmil
Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8A17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto-oncogene
Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*AP*UP*AP*GP*GP*GP*UP*GP*GP*GP*AP*UP*CP*UP*GP*GP*G)-3')
Authors:Wang, Z, Jurt, S, Dominguez-Martin, A, Johannsen, S, Sigel, R.K.O.
Deposit date:2021-11-08
Release date:2022-11-16
Last modified:2024-01-31
Method:SOLUTION NMR
Cite:Solution structure of an intramolecular RNA G-quadruplex formed by the 6A8A17U mutant from a 22mer guanine-rich sequence within the 5'UTR of BCL-2 proto-oncogene
To Be Published
4FR6
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BU of 4fr6 by Molmil
tRNA-Guanine Transglycosylase cocrystallized with pyridyl-alkine-substituted lin-benzoguanine ligand
Descriptor: 6-amino-2-(methylamino)-4-[2-({[trans-4-(pyridin-3-ylethynyl)cyclohexyl]methyl}amino)ethyl]-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one, Queuine tRNA-ribosyltransferase, ZINC ION
Authors:Immekus, F, Klebe, G.
Deposit date:2012-06-26
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Studies on TGT homodimer interface
To be Published
8V97
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BU of 8v97 by Molmil
GII.17 CS-E1 norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein VP1, DI(HYDROXYETHYL)ETHER
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2023-12-07
Release date:2024-06-19
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024

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