PDB: 35756 resultsInfo pagesStatus searchChemie searchBIRD

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4RQ6	Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dATP soaked with MgCl2 for 80 s Descriptor: ACETATE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*A)-3'), ... Authors: Vyas, R, Suo, Z. Deposit date: 2014-10-31 Release date: 2015-04-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography. J.Am.Chem.Soc., 137, 2015
1G07	CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT V149C Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME) Authors: Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W. Deposit date: 2000-10-05 Release date: 2001-05-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme. Protein Sci., 10, 2001
1G1W	T4 LYSOZYME MUTANT C54T/C97A/Q105M Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, LYSOZYME Authors: Quillin, M.L, Matthews, B.W. Deposit date: 2000-10-13 Release date: 2001-05-09 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme. Protein Sci., 10, 2001
2EUN	Cytochrome c peroxidase (CCP) in complex with 2,4-diaminopyrimidine Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PYRIMIDINE-2,4-DIAMINE, cytochrome c peroxidase Authors: Brenk, R, Vetter, S.W, Boyce, S.E, Goodin, D.B, Shoichet, B.K. Deposit date: 2005-10-29 Release date: 2006-04-11 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Probing molecular docking in a charged model binding site. J.Mol.Biol., 357, 2006
1XRX	Crystal structure of a DNA-binding protein Descriptor: CALCIUM ION, SeqA protein Authors: Guarne, A, Brendler, T, Zhao, Q, Ghirlando, R, Austin, S, Yang, W. Deposit date: 2004-10-16 Release date: 2005-05-10 Last modified: 2013-03-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structure of a SeqA-N filament: implications for DNA replication and chromosome organization. Embo J., 24, 2005
1G51	ASPARTYL TRNA SYNTHETASE FROM THERMUS THERMOPHILUS AT 2.4 A RESOLUTION Descriptor: ADENOSINE MONOPHOSPHATE, ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE, ASPARTYL-TRNA SYNTHETASE, ... Authors: Poterzsman, A, Delarue, M, Thierry, J.C, Moras, D. Deposit date: 2000-10-30 Release date: 2000-12-06 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase. J.Mol.Biol., 244, 1994
1HNL	CRYSTAL STRUCTURE OF A GLUTATHIONYLATED HUMAN LYSOZYME: A FOLDING INTERMEDIATE MIMIC IN THE FORMATION OF A DISULFIDE BOND Descriptor: GLUTATHIONE, HUMAN LYSOZYME Authors: Inaka, K, Matsushima, M, Miki, K. Deposit date: 1994-12-22 Release date: 1995-02-14 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of a glutathionylated human lysozyme: a folding intermediate mimic in the formation of a disulfide bond. Acta Crystallogr.,Sect.D, 51, 1995
2Z4Z	S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and BPH-sc01 Descriptor: (6E,11E)-HEPTADECA-6,11-DIENE-9,9-DIYLBIS(PHOSPHONIC ACID), Geranylgeranyl pyrophosphate synthetase, MAGNESIUM ION Authors: Chen, C.K.-M, Guo, R.T, Hudock, M, Cao, R, Oldfield, E, Wang, A.H.-J. Deposit date: 2007-06-26 Release date: 2008-07-01 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Inhibition of geranylgeranyl diphosphate synthase by bisphosphonates: a crystallographic and computational investigation J.Med.Chem., 51, 2008
1IEQ	CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, beta-D-glucopyranose, ... Authors: Hrmova, M, DeGori, R, Fincher, G.B, Varghese, J.N. Deposit date: 2001-04-11 Release date: 2001-11-14 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Catalytic mechanisms and reaction intermediates along the hydrolytic pathway of a plant beta-D-glucan glucohydrolase. Structure, 9, 2001
1IGO	Family 11 xylanase Descriptor: SULFATE ION, family 11 xylanase Authors: Oakley, A.J, Thomson, C, Heinrich, T, Dunlop, R, Wilce, M.C.J. Deposit date: 2001-04-18 Release date: 2002-04-18 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Characterization of a family 11 xylanase from Bacillus subtillis B230 used for paper bleaching. Acta Crystallogr.,Sect.D, 59, 2003
1GA7	CRYSTAL STRUCTURE OF THE ADP-RIBOSE PYROPHOSPHATASE IN COMPLEX WITH GD+3 Descriptor: GADOLINIUM ION, HYPOTHETICAL 23.7 KDA PROTEIN IN ICC-TOLC INTERGENIC REGION Authors: Gabelli, S.B, Bianchet, M.A, Bessman, M.J, Amzel, L.M. Deposit date: 2000-11-29 Release date: 2001-05-02 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.71 Å) Cite: The structure of ADP-ribose pyrophosphatase reveals the structural basis for the versatility of the Nudix family. Nat.Struct.Biol., 8, 2001
1ZUX	EosFP Fluorescent Protein- Green Form Descriptor: green to red photoconvertible GPF-like protein EosFP Authors: Nar, H, Nienhaus, K, Wiedenmann, J, Nienhaus, G.U. Deposit date: 2005-06-01 Release date: 2005-06-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP. Proc.Natl.Acad.Sci.Usa, 102, 2005
1GBW	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS Descriptor: LYSOZYME, SODIUM ION Authors: Funahashi, J, Takano, K, Yamagata, Y, Yutani, K. Deposit date: 2000-06-26 Release date: 2000-07-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Role of surface hydrophobic residues in the conformational stability of human lysozyme at three different positions. Biochemistry, 39, 2000
4RWI	Crystal structure of V561M FGFR1 gatekeeper mutation (C488A, C584S, V561M), apo Descriptor: Fibroblast growth factor receptor 1 Authors: Sohl, C.D, Anderson, K.S. Deposit date: 2014-12-04 Release date: 2015-04-15 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.292 Å) Cite: Illuminating the Molecular Mechanisms of Tyrosine Kinase Inhibitor Resistance for the FGFR1 Gatekeeper Mutation: The Achilles' Heel of Targeted Therapy. Acs Chem.Biol., 10, 2015
1ILW	Crystal Structure of Pyrazinamidase/Nicotinamidase of Pyrococcus horikoshii Descriptor: 180 aa long hypothetical Pyrazinamidase/nicotinamidase Authors: Du, X, Kim, S.-H, Berkeley Structural Genomics Center (BSGC) Deposit date: 2001-05-08 Release date: 2001-12-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii. Biochemistry, 40, 2001
1IMB	STRUCTURAL ANALYSIS OF INOSITOL MONOPHOSPHATASE COMPLEXES WITH SUBSTRATES Descriptor: GADOLINIUM ATOM, INOSITOL MONOPHOSPHATASE, L-MYO-INOSITOL-1-PHOSPHATE Authors: Bone, R. Deposit date: 1994-02-08 Release date: 1995-02-27 Last modified: 2017-11-29 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural analysis of inositol monophosphatase complexes with substrates. Biochemistry, 33, 1994
4RPY	Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dCTP soaked with MgCl2 for 30 s Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, ACETATE ION, CHLORIDE ION, ... Authors: Vyas, R, Suo, Z. Deposit date: 2014-10-31 Release date: 2015-04-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography. J.Am.Chem.Soc., 137, 2015
4NL5	Mycobacterium tuberculosis heme-degrading protein MhuD in complex with heme and cyanide Descriptor: ACETATE ION, CYANIDE ION, Heme-degrading monooxygenase HmoB, ... Authors: Morse, R.P, Chao, A, Goulding, C.W. Deposit date: 2013-11-13 Release date: 2014-06-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystallographic and Spectroscopic Insights into Heme Degradation by Mycobacterium tuberculosis MhuD. Inorg.Chem., 53, 2014
1GB0	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS Descriptor: LYSOZYME, SODIUM ION Authors: Funahashi, J, Takano, K, Yamagata, Y, Yutani, K. Deposit date: 2000-06-26 Release date: 2000-07-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Role of surface hydrophobic residues in the conformational stability of human lysozyme at three different positions. Biochemistry, 39, 2000
4NLE	Crystal structure of apo Adenylosuccinate Lyase from Mycobacterium smegmatis Descriptor: Adenylosuccinate lyase Authors: Banerjee, S, Murthy, M.R.N. Deposit date: 2013-11-14 Release date: 2014-03-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structural and kinetic studies on adenylosuccinate lyase from Mycobacterium smegmatis and Mycobacterium tuberculosis provide new insights on the catalytic residues of the enzyme. Febs J., 281, 2014
1GE3	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT LEFT-HANDED HELICAL POSITIONS Descriptor: LYSOZYME C, SODIUM ION Authors: Takano, K, Yamagata, Y, Yutani, K. Deposit date: 2000-10-06 Release date: 2000-11-08 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme Proteins, 44, 2001
1GEB	X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM Descriptor: CAMPHOR, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE Authors: Hishiki, T, Shimada, H, Nagano, S, Park, S.-Y, Ishimura, Y. Deposit date: 2000-11-01 Release date: 2000-11-15 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.03 Å) Cite: X-ray crystal structure and catalytic properties of Thr252Ile mutant of cytochrome P450cam: roles of Thr252 and water in the active center. J.Biochem., 128, 2000
4NMO	CFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36(Ac-K-1)(ANSRWPTS[Ac-K]I) Descriptor: GLYCEROL, Golgi-associated PDZ and coiled-coil motif-containing protein, iCAL36(Ac-K-1) peptide Authors: Amacher, J.F, Madden, D.R. Deposit date: 2013-11-15 Release date: 2014-10-01 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Chemically Modified Peptide Scaffolds Target the CFTR-Associated Ligand PDZ Domain. Plos One, 9, 2014
1IUU	P-HYDROXYBENZOATE HYDROXYLASE COMPLEXED WITH 4-AMINOBENZOATE AT PH 9.4 Descriptor: 4-AMINOBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE Authors: Gatti, D.L, Entsch, B, Ballou, D.P, Ludwig, M.L. Deposit date: 1995-11-22 Release date: 1996-04-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: pH-dependent structural changes in the active site of p-hydroxybenzoate hydroxylase point to the importance of proton and water movements during catalysis. Biochemistry, 35, 1996
1GFA	CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS Descriptor: LYSOZYME, SODIUM ION Authors: Funahashi, J, Takano, K, Yamagata, Y, Yutani, K. Deposit date: 2000-12-04 Release date: 2000-12-20 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability. J.Biol.Chem., 277, 2002

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