4ECU
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![BU of 4ecu by Molmil](/molmil-images/mine/4ecu) | Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 200 sec | Descriptor: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... | Authors: | Nakamura, T, Zhao, Y, Yang, W. | Deposit date: | 2012-03-26 | Release date: | 2012-07-11 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.949 Å) | Cite: | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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5VY6
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![BU of 5vy6 by Molmil](/molmil-images/mine/5vy6) | A self-assembling D-form DNA crystal lattice | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ... | Authors: | Simmons, C.R, Yan, H. | Deposit date: | 2017-05-24 | Release date: | 2017-08-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.064 Å) | Cite: | Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals. J. Am. Chem. Soc., 139, 2017
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4ED2
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![BU of 4ed2 by Molmil](/molmil-images/mine/4ed2) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.2 (Na+ HEPES) with 1 Ca2+ ion | Descriptor: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | Authors: | Nakamura, T, Zhao, Y, Yang, W. | Deposit date: | 2012-03-26 | Release date: | 2012-07-11 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.711 Å) | Cite: | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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4ED3
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![BU of 4ed3 by Molmil](/molmil-images/mine/4ed3) | Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.5 (Na+ HEPES) with 1 Ca2+ ion | Descriptor: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... | Authors: | Nakamura, T, Zhao, Y, Yang, W. | Deposit date: | 2012-03-26 | Release date: | 2012-07-11 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.791 Å) | Cite: | Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
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3Q8L
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![BU of 3q8l by Molmil](/molmil-images/mine/3q8l) | Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with substrate 5'-flap DNA, SM3+, and K+ | Descriptor: | DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3'), ... | Authors: | Tsutakawa, S.E, Classen, S, Chapados, B.R, Arvai, A, Finger, D.L, Guenther, G, Tomlinson, C.G, Thompson, P, Sarker, A.H, Shen, B, Cooper, P.K, Grasby, J.A, Tainer, J.A. | Deposit date: | 2011-01-06 | Release date: | 2011-04-27 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.319 Å) | Cite: | Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily. Cell(Cambridge,Mass.), 145, 2011
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1PJJ
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![BU of 1pjj by Molmil](/molmil-images/mine/1pjj) | Complex between the Lactococcus lactis Fpg and an abasic site containing DNA. | Descriptor: | DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), Formamidopyrimidine-DNA glycosylase, ... | Authors: | Serre, L, Pereira de Jesus, K, Boiteux, S, Zelwer, C, Castaing, B. | Deposit date: | 2003-06-03 | Release date: | 2004-06-08 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res., 33, 2005
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1KBD
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![BU of 1kbd by Molmil](/molmil-images/mine/1kbd) | SOLUTION STRUCTURE OF A 16 BASE-PAIR DNA RELATED TO THE HIV-1 KAPPA B SITE | Descriptor: | DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3') | Authors: | Tisne, C, Hantz, E, Hartmann, B, Delepierre, M. | Deposit date: | 1998-11-28 | Release date: | 1998-12-02 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of a non-palindromic 16 base-pair DNA related to the HIV-1 kappa B site: evidence for BI-BII equilibrium inducing a global dynamic curvature of the duplex. J.Mol.Biol., 279, 1998
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257D
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![BU of 257d by Molmil](/molmil-images/mine/257d) | |
7WM3
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![BU of 7wm3 by Molmil](/molmil-images/mine/7wm3) | hnRNP A2/B1 RRMs in complex with single-stranded DNA | Descriptor: | DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), Heterogeneous nuclear ribonucleoproteins A2/B1 | Authors: | Abula, A, Liu, Y, Guo, H, Li, T, Ji, X. | Deposit date: | 2022-01-14 | Release date: | 2022-06-29 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | Structural Insight Into hnRNP A2/B1 Homodimerization and DNA Recognition. J.Mol.Biol., 435, 2022
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256D
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![BU of 256d by Molmil](/molmil-images/mine/256d) | |
220D
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![BU of 220d by Molmil](/molmil-images/mine/220d) | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | Descriptor: | BARIUM ION, DNA (5'-D(*AP*CP*CP*CP*GP*CP*GP*GP*GP*T)-3') | Authors: | Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. | Deposit date: | 1995-06-26 | Release date: | 1996-01-31 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
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212D
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![BU of 212d by Molmil](/molmil-images/mine/212d) | INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA | Descriptor: | COBALT HEXAMMINE(III), DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') | Authors: | Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. | Deposit date: | 1995-06-26 | Release date: | 1996-01-31 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
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2BNA
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![BU of 2bna by Molmil](/molmil-images/mine/2bna) | |
3P4J
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![BU of 3p4j by Molmil](/molmil-images/mine/3p4j) | Ultra-high resolution structure of d(CGCGCG)2 Z-DNA | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE | Authors: | Brzezinski, K, Brzuszkiewicz, A, Dauter, M, Kubicki, M, Jaskolski, M, Dauter, Z. | Deposit date: | 2010-10-06 | Release date: | 2011-08-24 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (0.55 Å) | Cite: | High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 A. Nucleic Acids Res., 39, 2011
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4B3P
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![BU of 4b3p by Molmil](/molmil-images/mine/4b3p) | Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface | Descriptor: | DNA, P51 RT, REVERSE TRANSCRIPTASE/RIBONUCLEASE H, ... | Authors: | Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W. | Deposit date: | 2012-07-25 | Release date: | 2013-01-16 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (4.839 Å) | Cite: | Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation Nat.Struct.Mol.Biol., 20, 2013
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1QRV
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![BU of 1qrv by Molmil](/molmil-images/mine/1qrv) | CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA | Descriptor: | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3'), HIGH MOBILITY GROUP PROTEIN D, SODIUM ION | Authors: | Murphy IV, F.V, Sweet, R.M, Churchill, M.E.A. | Deposit date: | 1999-06-15 | Release date: | 1999-12-18 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. EMBO J., 18, 1999
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1PM5
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![BU of 1pm5 by Molmil](/molmil-images/mine/1pm5) | Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA | Descriptor: | DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), Formamidopyrimidine-DNA glycosylase, ... | Authors: | Pereira de Jesus-Tran, K, Serre, L, Zelwer, C, Castaing, B. | Deposit date: | 2003-06-10 | Release date: | 2004-07-27 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res., 33, 2005
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117D
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![BU of 117d by Molmil](/molmil-images/mine/117d) | |
124D
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![BU of 124d by Molmil](/molmil-images/mine/124d) | |
197D
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![BU of 197d by Molmil](/molmil-images/mine/197d) | |
1D70
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![BU of 1d70 by Molmil](/molmil-images/mine/1d70) | |
2K1N
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![BU of 2k1n by Molmil](/molmil-images/mine/2k1n) | DNA bound structure of the N-terminal domain of AbrB | Descriptor: | AbrB family transcriptional regulator, DNA (25-MER) | Authors: | Cavanagh, J, Bobay, B.G, Sullivan, D.M, Thompson, R.J. | Deposit date: | 2008-03-10 | Release date: | 2008-11-11 | Last modified: | 2022-03-16 | Method: | SOLUTION NMR | Cite: | Insights into the Nature of DNA Binding of AbrB-like Transcription Factors Structure, 16, 2008
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457D
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![BU of 457d by Molmil](/molmil-images/mine/457d) | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | Authors: | Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. | Deposit date: | 1999-03-06 | Release date: | 2000-01-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. J.Mol.Biol., 294, 1999
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1A9G
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![BU of 1a9g by Molmil](/molmil-images/mine/1a9g) | |
1A9H
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![BU of 1a9h by Molmil](/molmil-images/mine/1a9h) | |