Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 543 results

5N9O
DownloadVisualize
BU of 5n9o by Molmil
EGFP(enhanced green fluorescent protein) mutant - L232H
Descriptor: 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL, Green fluorescent protein
Authors:Kachalova, G.S, Popov, A.P, Simanovskaya, A.A, Krukova, M.V, Lipkin, A.V.
Deposit date:2017-02-26
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structure of EGFP(enhanced green fluorescent protein) mutant - L232H at 0.153 nm
To Be Published
8OVY
DownloadVisualize
BU of 8ovy by Molmil
Structure of analogue of superfolded GFP
Descriptor: Green fluorescent protein
Authors:Dunkelmann, D, Fiedler, M, Bellini, D, Alvira, C.P, Chin, J.W.
Deposit date:2023-04-26
Release date:2024-01-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.537 Å)
Cite:Adding alpha , alpha-disubstituted and beta-linked monomers to the genetic code of an organism.
Nature, 625, 2024
7O7C
DownloadVisualize
BU of 7o7c by Molmil
Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by synchrotron radiation at 100K
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Woodhouse, J, Adam, V, Hadjidemetriou, K, Colletier, J.-P, Weik, M.
Deposit date:2021-04-13
Release date:2022-07-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Rational Control of Off-State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement.
Chemphyschem, 23, 2022
7A7K
DownloadVisualize
BU of 7a7k by Molmil
rsEGFP in the green-on state
Descriptor: Green fluorescent protein, SULFATE ION
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2020-08-30
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021
4IK8
DownloadVisualize
BU of 4ik8 by Molmil
High resolution structure of GCaMP3 dimer form 1 at pH 7.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
1Q4C
DownloadVisualize
BU of 1q4c by Molmil
S65T Q80R T203C Green Fluorescent Protein (GFP) pH 8.5
Descriptor: Green Fluorescent Protein
Authors:Jain, R.K, Ranganathan, R.
Deposit date:2003-08-02
Release date:2004-02-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Local complexity of amino acid interactions in a protein core.
Proc.Natl.Acad.Sci.USA, 101, 2004
5OX9
DownloadVisualize
BU of 5ox9 by Molmil
Structure of the Cyan Fluorescent Protein SCFP3A at pH 4.5
Descriptor: CHLORIDE ION, Green fluorescent protein
Authors:Gotthard, G, von Stetten, D, Clavel, D, Noirclerc-Savoye, M, Royant, A.
Deposit date:2017-09-06
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Chromophore Isomer Stabilization Is Critical to the Efficient Fluorescence of Cyan Fluorescent Proteins.
Biochemistry, 56, 2017
5MA9
DownloadVisualize
BU of 5ma9 by Molmil
GFP-binding DARPin fusion gc_R11
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, R11
Authors:Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
Deposit date:2016-11-03
Release date:2017-11-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
1Q4D
DownloadVisualize
BU of 1q4d by Molmil
S65T Q80R T203C Green Fluorescent Protein (GFP) pH 5.5
Descriptor: Green Fluorescent Protein
Authors:Jain, R.K, Ranganathan, R.
Deposit date:2003-08-02
Release date:2004-02-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Local complexity of amino acid interactions in a protein core.
Proc.Natl.Acad.Sci.USA, 101, 2004
4KA9
DownloadVisualize
BU of 4ka9 by Molmil
Crystal structure analysis of single amino acid deletion mutations in EGFP
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Green fluorescent protein, ...
Authors:Arpino, J.A.J, Rizkallah, P.J.
Deposit date:2013-04-22
Release date:2014-05-07
Last modified:2015-11-25
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Random single amino acid deletion sampling unveils structural tolerance and the benefits of helical registry shift on GFP folding and structure.
Structure, 22, 2014
2YDZ
DownloadVisualize
BU of 2ydz by Molmil
X-ray structure of the cyan fluorescent protein SCFP3A (K206A mutant)
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:von Stetten, D, Goedhart, J, Noirclerc-Savoye, M, Lelimousin, M, Joosen, L, Hink, M.A, van Weeren, L, Gadella, T.W.J, Royant, A.
Deposit date:2011-03-25
Release date:2012-03-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structure-Guided Evolution of Cyan Fluorescent Proteins Towards a Quantum Yield of 93%
Nat.Commun, 3, 2012
2QLE
DownloadVisualize
BU of 2qle by Molmil
GFP/S205V mutant
Descriptor: Green fluorescent protein, IMIDAZOLE
Authors:Shu, X, Remington, S.J.
Deposit date:2007-07-12
Release date:2008-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V.
Protein Sci., 16, 2007
3DPW
DownloadVisualize
BU of 3dpw by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6DQ1
DownloadVisualize
BU of 6dq1 by Molmil
sfGFP N149 mutated to 4-nitro-L-phenylalanine
Descriptor: SODIUM ION, sfGFP
Authors:Phillips-Piro, C.M, Savidge, N, Lee, B.
Deposit date:2018-06-10
Release date:2018-10-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Crystal structures of green fluorescent protein with the unnatural amino acid 4-nitro-L-phenylalanine.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6OG8
DownloadVisualize
BU of 6og8 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51)
Descriptor: Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51)
Authors:Lin, C.-Y, Deng, A, Boxer, S.G.
Deposit date:2019-04-01
Release date:2020-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems.
J.Phys.Chem.B, 124, 2020
6T39
DownloadVisualize
BU of 6t39 by Molmil
Crystal structure of rsEGFP2 in its off-state determined by SFX
Descriptor: Green fluorescent protein
Authors:Woodhouse, J, Coquelle, N, Adam, V, Barends, T.R.M, De La Mora, E, Bourgeois, D, Colletier, J.P, Schlichting, I, Weik, M.
Deposit date:2019-10-10
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.
Nat Commun, 11, 2020
3GEX
DownloadVisualize
BU of 3gex by Molmil
1.6 angstrom crystal structure of fluorescent protein Cypet
Descriptor: Green fluorescent protein
Authors:Hu, X, Liu, R.
Deposit date:2009-02-26
Release date:2010-03-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:1.6 angstrom crystal structure of fluorescent protein Cypet
To be Published
1Q73
DownloadVisualize
BU of 1q73 by Molmil
S65T Q80R Y145C T203C Green Fluorescent Protein (GFP) pH 8.5
Descriptor: Green Fluorescent Protein
Authors:Jain, R.K, Ranganathan, R.
Deposit date:2003-08-15
Release date:2004-02-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Local complexity of amino acid interactions in a protein core.
Proc.Natl.Acad.Sci.USA, 101, 2004
6OGA
DownloadVisualize
BU of 6oga by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(3-Br1Y), H148D; circular permutant (50-51)
Descriptor: ACETATE ION, Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(3-Br1Y), ...
Authors:Lin, C.-Y, Boxer, S.G.
Deposit date:2019-04-02
Release date:2020-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems.
J.Phys.Chem.B, 124, 2020
7SAH
DownloadVisualize
BU of 7sah by Molmil
Crystal Structure of LaG16 Nanobody bound to eGFP
Descriptor: Green fluorescent protein, LaG16
Authors:Cong, A.T.Q, Schellenberg, M.J.
Deposit date:2021-09-22
Release date:2022-09-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices.
Protein Sci., 31, 2022
4KEX
DownloadVisualize
BU of 4kex by Molmil
Crystal structure analysis of a single amino acid deletion mutation in EGFP
Descriptor: Green fluorescent protein
Authors:Arpino, J.A.J, Rizkallah, P.J.
Deposit date:2013-04-26
Release date:2014-08-06
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and dynamic changes associated with beneficial engineered single-amino-acid deletion mutations in enhanced green fluorescent protein.
Acta Crystallogr.,Sect.D, 70, 2014
5T3I
DownloadVisualize
BU of 5t3i by Molmil
cyan fluorescence protein soaked with selenourea for 5 min
Descriptor: Green fluorescent protein, PHOSPHATE ION, selenourea
Authors:Luo, Z, Dauter, Z.
Deposit date:2016-08-25
Release date:2016-11-30
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures.
Sci Rep, 6, 2016
3DQ2
DownloadVisualize
BU of 3dq2 by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQ6
DownloadVisualize
BU of 3dq6 by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2AWJ
DownloadVisualize
BU of 2awj by Molmil
GFP R96M pre-cyclized intermediate in chromophore formation
Descriptor: MAGNESIUM ION, green-fluorescent protein
Authors:Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-09-01
Release date:2006-04-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon