Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 160 results

8BN0
DownloadVisualize
BU of 8bn0 by Molmil
Bacteroides thetaiotaomicron surface protein BT1954 bound to
Descriptor: CHLORIDE ION, COB(II)INAMIDE, CYANIDE ION, ...
Authors:Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
Deposit date:2022-11-11
Release date:2023-08-16
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BYM
DownloadVisualize
BU of 8bym by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula
Descriptor: S-layer homology domain-containing protein
Authors:Silale, A, van den Berg, B.
Deposit date:2022-12-13
Release date:2023-11-08
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BMZ
DownloadVisualize
BU of 8bmz by Molmil
Bacteroides thetaiotaomicron surface lipoprotein BT1954 bound to adenosylcobalamin
Descriptor: Adenosylcobalamin, CHLORIDE ION, Putative surface layer protein, ...
Authors:Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
Deposit date:2022-11-11
Release date:2023-08-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
1TLY
DownloadVisualize
BU of 1tly by Molmil
Tsx structure
Descriptor: Nucleoside-specific channel-forming protein tsx
Authors:Ye, J, van den Berg, B.
Deposit date:2004-06-10
Release date:2004-08-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal structure of the bacterial nucleoside transporter Tsx.
Embo J., 23, 2004
1TLZ
DownloadVisualize
BU of 1tlz by Molmil
Tsx structure complexed with uridine
Descriptor: Nucleoside-specific channel-forming protein tsx, URIDINE
Authors:Ye, J, van den Berg, B.
Deposit date:2004-06-10
Release date:2004-08-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the bacterial nucleoside transporter Tsx.
Embo J., 23, 2004
4KAX
DownloadVisualize
BU of 4kax by Molmil
Crystal structure of the Grp1 PH domain in complex with Arf6-GTP
Descriptor: ADP-ribosylation factor 6, CITRIC ACID, Cytohesin-3, ...
Authors:Lambright, D.G, Malaby, A.W, van den Berg, B.
Deposit date:2013-04-23
Release date:2013-08-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for membrane recruitment and allosteric activation of cytohesin family Arf GTPase exchange factors.
Proc.Natl.Acad.Sci.USA, 110, 2013
1TLW
DownloadVisualize
BU of 1tlw by Molmil
Tsx structure complexed with thymidine
Descriptor: Nucleoside-specific channel-forming protein tsx, THYMIDINE
Authors:Ye, J, van den Berg, B.
Deposit date:2004-06-10
Release date:2004-08-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the bacterial nucleoside transporter Tsx.
Embo J., 23, 2004
2F1C
DownloadVisualize
BU of 2f1c by Molmil
Crystal structure of the monomeric porin OmpG
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Outer membrane protein G
Authors:Subbarao, G.V, van den Berg, B.
Deposit date:2005-11-14
Release date:2006-06-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the Monomeric Porin OmpG.
J.Mol.Biol., 360, 2006
2X4M
DownloadVisualize
BU of 2x4m by Molmil
Yersinia Pestis Plasminogen Activator Pla
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, COAGULASE/FIBRINOLYSIN, SULFATE ION
Authors:Eren, E, Murphy, M, Goguen, J, van den Berg, B.
Deposit date:2010-02-05
Release date:2010-07-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:An Active Site Water Network in the Plasminogen Activator Pla from Yersinia Pestis
Structure, 18, 2010
2R4L
DownloadVisualize
BU of 2r4l by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant P34A
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-08-31
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R4N
DownloadVisualize
BU of 2r4n by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant N33A
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-08-31
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R4P
DownloadVisualize
BU of 2r4p by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant G212E
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-08-31
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R4O
DownloadVisualize
BU of 2r4o by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta NPA
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-08-31
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R88
DownloadVisualize
BU of 2r88 by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta S3 kink
Descriptor: Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-09-10
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R8A
DownloadVisualize
BU of 2r8a by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta N8
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-09-10
Release date:2008-09-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
Proc.Natl.Acad.Sci.USA, 108, 2011
2R89
DownloadVisualize
BU of 2r89 by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta N3
Descriptor: Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2007-09-10
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
Proc.Natl.Acad.Sci.USA, 108, 2011
3DWO
DownloadVisualize
BU of 3dwo by Molmil
Crystal structure of a Pseudomonas aeruginosa FadL homologue
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Probable outer membrane protein, SULFATE ION
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2008-07-22
Release date:2008-12-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall.
Nature, 458, 2009
3DWN
DownloadVisualize
BU of 3dwn by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant A77E/S100R
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
Authors:Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
Deposit date:2008-07-22
Release date:2008-12-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Transmembrane passage of hydrophobic compounds through a protein channel wall.
Nature, 458, 2009
4FOZ
DownloadVisualize
BU of 4foz by Molmil
Crystal Structure of OccD1 (OprD) Y282R/D307H
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Porin D
Authors:Eren, E, van den Berg, B.
Deposit date:2012-06-21
Release date:2013-03-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa.
J.Biol.Chem., 288, 2013
2QTK
DownloadVisualize
BU of 2qtk by Molmil
Crystal Structure of the outer membrane protein opdK from Pseudomonas aeruginosa
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Probable porin
Authors:Biswas, S, Van den Berg, B.
Deposit date:2007-08-02
Release date:2008-06-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa.
Structure, 16, 2008
4FSO
DownloadVisualize
BU of 4fso by Molmil
Crystal Structure of Pseudomonas aeruginosa OccK10 (OpdN)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CALCIUM ION, Probable porin
Authors:Eren, E, van den Berg, B.
Deposit date:2012-06-27
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal Structures of OccK Subfamily Proteins
To be Published
4FUV
DownloadVisualize
BU of 4fuv by Molmil
Crystal Structure of Acinetobacter baumannii CarO
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, SULFATE ION, porin protein associated with imipenem resistance
Authors:Eren, E, van den Berg, B.
Deposit date:2012-06-28
Release date:2013-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Outer membrane transport of amino acids and antibiotics by an 8-stranded b-barrel protein
To be Published
4FRX
DownloadVisualize
BU of 4frx by Molmil
Crystal Structure of Pseudomonas aeruginosa OccK8 (OprE)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Anaerobically-induced outer membrane porin OprE
Authors:Eren, E, van den Berg, B.
Deposit date:2012-06-26
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of OccK Subfamily Proteins
To be Published
4FSP
DownloadVisualize
BU of 4fsp by Molmil
Crystal Structure of Pseudomonas aeruginosa OccK11 (OpdR)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Probable porin
Authors:Eren, E, van den Berg, B.
Deposit date:2012-06-27
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.323 Å)
Cite:Crystal Structures of OccK Subfamily Proteins
To be Published
4FT6
DownloadVisualize
BU of 4ft6 by Molmil
Crystal Structure of Pseudomonas aeruginosa OccK9 (OpdG)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, DECYL-BETA-D-MALTOPYRANOSIDE, Probable porin
Authors:Eren, E, van den Berg, B.
Deposit date:2012-06-27
Release date:2013-07-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Crystal Structures of OccK Subfamily Proteins
To be Published

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon