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PDB: 260 results

4G51
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BU of 4g51 by Molmil
Crystallographic analysis of the interaction of nitric oxide with hemoglobin from Trematomus bernacchii in the T quaternary structure (fully ligated state).
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, NITRIC OXIDE, ...
Authors:Merlino, A, Balsamo, A, Pica, A, Mazzarella, L, Vergara, A.
Deposit date:2012-07-17
Release date:2013-01-16
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Selective X-ray-induced NO photodissociation in haemoglobin crystals: evidence from a Raman-assisted crystallographic study.
Acta Crystallogr.,Sect.D, 69, 2013
3RID
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BU of 3rid by Molmil
X-ray structure of the C-terminal swapped dimer of P114A variant of Ribonuclease A
Descriptor: 2'-DEOXYCYTIDINE-2'-DEOXYGUANOSINE-3',5'-MONOPHOSPHATE, PHOSPHATE ION, Ribonuclease pancreatic
Authors:Merlino, A, Balsamo, A, Mazzarella, L, Sica, F.
Deposit date:2011-04-13
Release date:2012-02-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Chain termini cross-talk in the swapping process of bovine pancreatic ribonuclease.
Biochimie, 94, 2012
3RH1
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BU of 3rh1 by Molmil
X-ray Structure of a cis-proline (P114) to alanine variant of Ribonuclease A
Descriptor: CHLORIDE ION, Ribonuclease pancreatic
Authors:Merlino, A, Balsamo, A, Mazzarella, L, Sica, F.
Deposit date:2011-04-11
Release date:2012-02-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Chain termini cross-talk in the swapping process of bovine pancreatic ribonuclease.
Biochimie, 94, 2012
4IRO
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BU of 4iro by Molmil
Crystal structure of T-state carbonmonoxy hemoglobin from Trematomus bernacchii at pH 8.4
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Merlino, A, Balsamo, A, Mazzarella, L, Vergara, A.
Deposit date:2013-01-15
Release date:2013-02-20
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of tertiary structures on the Root effect in fish hemoglobins.
Biochim.Biophys.Acta, 1834, 2013
4Z46
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BU of 4z46 by Molmil
X-ray structure of the bis-platinum lysozyme adduct formed in the reaction between the protein and the two drugs Cisplatin and Oxaliplatin
Descriptor: 1,2-ETHANEDIOL, CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II), Cisplatin, ...
Authors:Merlino, A.
Deposit date:2015-04-01
Release date:2015-05-27
Last modified:2015-06-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Oxaliplatin vs. cisplatin: competition experiments on their binding to lysozyme.
Dalton Trans, 44, 2015
4ZFP
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BU of 4zfp by Molmil
A new crystal structure for the adduct formed in the reaction between AuSac2, a cytotoxic homoleptic gold(I) compound with the saccharinate ligand, and the model protein hen egg white lysozyme
Descriptor: 1,2-ETHANEDIOL, GOLD ION, Lysozyme C, ...
Authors:Merlino, A.
Deposit date:2015-04-21
Release date:2015-06-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural evidences for a secondary gold binding site in the hydrophobic box of lysozyme.
Biometals, 28, 2015
4L2A
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BU of 4l2a by Molmil
X-ray structure of the C57R mutant of the iron superoxide dismutase from Pseudoalteromonas haloplanktis (crystal form II)
Descriptor: FE (III) ION, Superoxide dismutase [Fe]
Authors:Merlino, A, Russo Krauss, I, Sica, F.
Deposit date:2013-06-04
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural and denaturation studies of two mutants of a cold adapted superoxide dismutase point to the importance of electrostatic interactions in protein stability.
Biochim.Biophys.Acta, 1844, 2014
4Z3M
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BU of 4z3m by Molmil
X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) Complex with S,O Bidentate Ligands (9b)
Descriptor: 1,2-ETHANEDIOL, 3-[2-chloranyl-2-[dimethyl(oxidanyl)-{4}-sulfanyl]-4-ethylsulfanyl-1-oxa-3{3}-thia-2{4}-platinacyclohexa-3,5-dien-6-yl]phenol, DIMETHYL SULFOXIDE, ...
Authors:Merlino, A.
Deposit date:2015-03-31
Release date:2015-09-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Platinum(II) Complexes with O,S Bidentate Ligands: Biophysical Characterization, Antiproliferative Activity, and Crystallographic Evidence of Protein Binding.
Inorg.Chem., 54, 2015
4L2B
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BU of 4l2b by Molmil
X-ray structure of the C57S mutant of the iron superoxide dismutase from Pseudoalteromonas haloplanktis
Descriptor: FE (III) ION, Superoxide dismutase [Fe], alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Merlino, A, Russo Krauss, I, Sica, F.
Deposit date:2013-06-04
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and denaturation studies of two mutants of a cold adapted superoxide dismutase point to the importance of electrostatic interactions in protein stability.
Biochim.Biophys.Acta, 1844, 2014
4ZEE
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BU of 4zee by Molmil
X-ray structure of the bis-platinum lysozyme adduct formed in the reaction between the protein and the two drugs Cisplatin and Oxaliplatin (preparation 2)
Descriptor: 1,2-ETHANEDIOL, CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II), Cisplatin, ...
Authors:Merlino, A.
Deposit date:2015-04-20
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Oxaliplatin vs. cisplatin: competition experiments on their binding to lysozyme.
Dalton Trans, 44, 2015
3GKV
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BU of 3gkv by Molmil
X-ray structure of an intermediate along the oxidation pathway of Trematomus bernacchii hemoglobin
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Merlino, A, Vitagliano, L, Sica, F, Vergara, A, Mazzarella, L.
Deposit date:2009-03-11
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Combined crystallographic and spectroscopic analysis of Trematomus bernacchii hemoglobin highlights analogies and differences in the peculiar oxidation pathway of Antarctic fish hemoglobins
Biopolymers, 91, 2009
4ESA
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BU of 4esa by Molmil
X-ray structure of carbonmonoxy hemoglobin of Eleginops maclovinus
Descriptor: CARBON MONOXIDE, GLYCEROL, Hemoglobin alpha chain, ...
Authors:Merlino, A, Vitagliano, L, Mazzarella, L, Vergara, A.
Deposit date:2012-04-23
Release date:2012-11-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:ATP regulation of the ligand-binding properties in temperate and cold-adapted haemoglobins. X-ray structure and ligand-binding kinetics in the sub-Antarctic fish Eleginops maclovinus.
Mol Biosyst, 8, 2012
4MR1
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BU of 4mr1 by Molmil
X-ray structure of the adduct between hen egg white lysozyme and cis-diamminediiodoplatinum(II)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Merlino, A.
Deposit date:2013-09-17
Release date:2014-06-04
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Peculiar features in the crystal structure of the adduct formed between cis-PtI2(NH3)2 and hen egg white lysozyme.
Inorg.Chem., 52, 2013
4OOT
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BU of 4oot by Molmil
X-ray structure of the protein-gold adduct formed upon reaction of Aubipic with hen egg white lysozyme
Descriptor: 1,2-ETHANEDIOL, GOLD ION, Lysozyme C, ...
Authors:Merlino, A.
Deposit date:2014-02-04
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein Recognition of Gold-Based Drugs: 3D Structure of the Complex Formed When Lysozyme Reacts with Aubipy(c.).
ACS Med Chem Lett, 5, 2014
4OTU
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BU of 4otu by Molmil
Crystal structure of the gamma-glutamyltranspeptidase from Bacillus licheniformis in complex with L-Glutamate
Descriptor: GLUTAMIC ACID, Gamma glutamyl transpeptidase, Gamma-glutamyltranspeptidase, ...
Authors:Merlino, A.
Deposit date:2014-02-14
Release date:2014-07-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.022 Å)
Cite:Low resolution X-ray structure of gamma-glutamyltranspeptidase from Bacillus licheniformis: Opened active site cleft and a cluster of acid residues potentially involved in the recognition of a metal ion.
Biochim.Biophys.Acta, 1844, 2014
4OTT
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BU of 4ott by Molmil
Crystal structure of the gamma-glutamyltranspeptidase from Bacillus licheniformis.
Descriptor: Gamma glutamyl transpeptidase, Gamma-glutamyltranspeptidase, MAGNESIUM ION
Authors:Merlino, A.
Deposit date:2014-02-14
Release date:2014-07-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Low resolution X-ray structure of gamma-glutamyltranspeptidase from Bacillus licheniformis: Opened active site cleft and a cluster of acid residues potentially involved in the recognition of a metal ion.
Biochim.Biophys.Acta, 1844, 2014
4OOO
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BU of 4ooo by Molmil
X-ray structure of the lysozyme derivative of tetrakis(acetato)chlorido diruthenium(II,III) complex
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Merlino, A.
Deposit date:2014-02-03
Release date:2014-06-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Unusual Structural Features in the Lysozyme Derivative of the Tetrakis(acetato)chloridodiruthenium(II,III) Complex.
Angew.Chem.Int.Ed.Engl., 53, 2014
2Y3Z
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BU of 2y3z by Molmil
Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - apo enzyme
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-ISOPROPYLMALATE DEHYDROGENASE, GLYCEROL, ...
Authors:Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M.
Deposit date:2011-01-04
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase.
Mol.Biosyst., 7, 2011
2Y41
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BU of 2y41 by Molmil
Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with IPM and MN
Descriptor: 3-ISOPROPYLMALATE DEHYDROGENASE, 3-ISOPROPYLMALIC ACID, MANGANESE (II) ION
Authors:Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M.
Deposit date:2011-01-04
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase.
Mol.Biosyst., 7, 2011
2Y40
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BU of 2y40 by Molmil
Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with Mn
Descriptor: 3-ISOPROPYLMALATE DEHYDROGENASE, MANGANESE (II) ION
Authors:Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M.
Deposit date:2011-01-04
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase.
Mol.Biosyst., 7, 2011
2Y42
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BU of 2y42 by Molmil
Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with NADH and Mn
Descriptor: 3-ISOPROPYLMALATE DEHYDROGENASE, BICINE, MANGANESE (II) ION, ...
Authors:Graczer, E, merlin, A, Singh, R.K, Manikandan, K, Zavodsky, P, Weiss, M.S, Vas, M.
Deposit date:2011-01-04
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic Level Description of the Domain Closure in a Dimeric Enzyme: Thermus Thermophilus 3-Isopropylmalate Dehydrogenase.
Mol.Biosyst., 7, 2011
11BG
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BU of 11bg by Molmil
A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE
Descriptor: PROTEIN (BOVINE SEMINAL RIBONUCLEASE), SULFATE ION, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
Authors:Vitagliano, L, Adinolfi, S, Sica, F, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:1999-03-11
Release date:1999-11-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease.
J.Mol.Biol., 293, 1999
1JVT
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BU of 1jvt by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND-FREE FORM)
Descriptor: RIBONUCLEASE A
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2001-08-31
Release date:2002-06-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
1JVU
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BU of 1jvu by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)
Descriptor: CYTIDINE-2'-MONOPHOSPHATE, RIBONUCLEASE A
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2001-08-31
Release date:2002-06-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
8A2L
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BU of 8a2l by Molmil
X-ray structure of TRIL-encapsulated human heavy chain ferritin
Descriptor: CHLORIDE ION, FE (III) ION, Ferritin heavy chain, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2022-06-03
Release date:2023-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:A new and efficient procedure to load bioactive molecules within the human heavy-chain ferritin nanocage.
Front Mol Biosci, 10, 2023

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數據於2024-07-24公開中

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