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PDB: 27 件

2PLQ
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Crystal structure of the amidase from geobacillus pallidus RAPc8
分子名称: Aliphatic amidase
著者Kimani, S.W, Sewell, B.T, Agarkar, V.B, Sayed, M.F, Cowan, D.A.
登録日2007-04-20
公開日2007-05-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The quaternary structure of the amidase from Geobacillus pallidus RAPc8 is revealed by its crystal packing.
Acta Crystallogr.,Sect.F, 62, 2006
8GCY
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Co-crystal structure of CBL-B in complex with N-Aryl isoindolin-1-one inhibitor
分子名称: 1,2-ETHANEDIOL, 2-{3-[(1s,3R)-3-methyl-1-(4-methyl-4H-1,2,4-triazol-3-yl)cyclobutyl]phenyl}-6-{[(3S)-3-methylpiperidin-1-yl]methyl}-4-(trifluoromethyl)-2,3-dihydro-1H-isoindol-1-one, E3 ubiquitin-protein ligase CBL-B, ...
著者Kimani, S, Zeng, H, Dong, A, Li, Y, Santhakumar, V, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2023-03-03
公開日2023-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献The co-crystal structure of Cbl-b and a small-molecule inhibitor reveals the mechanism of Cbl-b inhibition.
Commun Biol, 6, 2023
7UFV
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Crystal structure of the WDR domain of human DCAF1 in complex with OICR-6766
分子名称: (3P)-N-[(1S)-3-amino-1-(3-chlorophenyl)-3-oxopropyl]-3-(2-fluorophenyl)-1H-pyrazole-4-carboxamide, DDB1- and CUL4-associated factor 1, UNKNOWN ATOM OR ION
著者Kimani, S, Li, A, Li, Y, Dong, A, Hutchinson, A, Seitova, A, Wilson, B, Al-Awar, R, Vedadi, M, Brown, P, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2022-03-23
公開日2022-05-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery of Nanomolar DCAF1 Small Molecule Ligands.
J.Med.Chem., 66, 2023
9BHS
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Crystal structure of the WDR domain of human DCAF1 in complex with OICR-9939 compound
分子名称: (4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-(1-methyl-1H-pyrazol-4-yl)-1H-pyrrole-3-carboxamide, DDB1- and CUL4-associated factor 1, UNKNOWN LIGAND
著者kimani, S, Dong, A, Li, Y, Seitova, A, Al-Awar, R, Wilson, B, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2024-04-21
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structure of the WDR domain of human DCAF1 in complex with OICR-9939 compound
To be published
9BHR
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BU of 9bhr by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with OICR-40155 compound
分子名称: (4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-{(1E)-3-[(2-methoxyethyl)amino]-3-oxoprop-1-en-1-yl}-1H-pyrrole-3-carboxamide, DDB1- and CUL4-associated factor 1
著者kimani, S, Dong, A, Li, Y, Seitova, A, Al-Awar, R, Krausser, C, Wilson, B, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2024-04-21
公開日2024-05-08
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Crystal structure of the WDR domain of human DCAF1 in complex with OICR-40155 compound
To be published
7SSE
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Crystal structure of the WDR domain of human DCAF1 in complex with CYCA-117-70
分子名称: DDB1- and CUL4-associated factor 1, N-[(3R)-1-(3-fluorophenyl)piperidin-3-yl]-6-(morpholin-4-yl)pyrimidin-4-amine
著者Kimani, S, Owen, J, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Shahani, V.M, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2021-11-10
公開日2021-12-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets.
J.Chem.Inf.Model., 63, 2023
8F8E
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Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound
分子名称: (3P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-3-(4-chloro-2-fluorophenyl)-1H-pyrazole-4-carboxamide, CITRIC ACID, DDB1- and CUL4-associated factor 1
著者Kimani, S, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Wilson, B, Al-Awar, R, Vedadi, M, Brown, P, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2022-11-21
公開日2023-03-01
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound
To be published
8T5I
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Crystal structure of human WDR5 in complex with MR4397
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(2S)-1-(6,7-dihydrothieno[3,2-c]pyridin-5(4H)-yl)-1-oxopentan-2-yl]-3-[(1H-imidazol-1-yl)methyl]benzamide, ...
著者Kimani, S, Dong, A, Li, F, Loppnau, P, Ackloo, S, Vedadi, M, Brown, P.J, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2023-06-13
公開日2023-08-09
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of human WDR5 in complex with MR4397
To be published
8TRE
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Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Isoform 2 of E3 ubiquitin-protein ligase TRIP12, UNKNOWN ATOM OR ION
著者Kimani, S, Dong, A, Li, Y, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2023-08-09
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ATP
To be published
7UW7
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Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Isoform 2 of E3 ubiquitin-protein ligase TRIP12, UNKNOWN ATOM OR ION
著者Kimani, S, Dong, A, Li, Y, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2022-05-02
公開日2022-06-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ADP
To Be Published
4IZW
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BU of 4izw by Molmil
The E41L mutant of the amidase from Nesterenkonia sp. AN1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
分子名称: 2-fluoroacetamide, ACETAMIDE, Amidase
著者Kimani, S.W, Sewell, B.T.
登録日2013-01-30
公開日2014-02-12
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZS
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BU of 4izs by Molmil
The C145A mutant of the amidase from Nesterenkonia sp. AN1 in complex with butyramide
分子名称: Amidase, BUTYRAMIDE, DI(HYDROXYETHYL)ETHER
著者Kimani, S.W, Sewell, B.T.
登録日2013-01-30
公開日2014-02-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
5NY7
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A C145A mutant of Nesterenkonia AN1 amidase bound to nicotinamide
分子名称: Amidase, CHLORIDE ION, NICOTINAMIDE
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-11
公開日2018-05-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NY2
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A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
分子名称: Amidase
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-11
公開日2018-06-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NZ5
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BU of 5nz5 by Molmil
A C145S mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
分子名称: Amidase
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-12
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYC
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A C145A mutant of Nesterenkonia AN1 amidase bound to propionitrile
分子名称: Amidase, DI(HYDROXYETHYL)ETHER, propanenitrile
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-11
公開日2018-05-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYE
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BU of 5nye by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to propionamide
分子名称: Amidase, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-11
公開日2018-05-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYB
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A C145A mutant of Nesterenkonia AN1 amidase bound to adipamide
分子名称: Amidase, adipamide
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-11
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NXZ
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BU of 5nxz by Molmil
A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
分子名称: Amidase
著者Kimani, S.W, Sewell, B.T.
登録日2017-05-11
公開日2018-05-30
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Substrate recognition by an amidase of the nitrilase superfamily
To be published
4IZU
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BU of 4izu by Molmil
The E41Q mutant of the amidase from Nesterenkonia sp. AN1 showing the result of Michael addition of acrylamide at the active site cysteine
分子名称: Amidase, PROPIONAMIDE, prop-2-enamide
著者Kimani, S.W, Sewell, B.T.
登録日2013-01-30
公開日2014-02-12
最終更新日2014-02-19
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZT
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BU of 4izt by Molmil
The E41Q mutant of the amidase from Nesterenkonia sp. AN1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
分子名称: 2-fluoroacetamide, ACETAMIDE, Amidase
著者Kimani, S.W, Sewell, B.T.
登録日2013-01-30
公開日2014-02-12
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZV
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BU of 4izv by Molmil
The E41Q/C145A double mutant of the amidase from Nesterenkonia sp. AN1 in complex with acrylamide
分子名称: Amidase, PROPIONAMIDE, prop-2-enamide
著者Kimani, S.W, Sewell, B.T.
登録日2013-01-30
公開日2014-02-12
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
5JQN
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NitN Amidase from Neterenkonia sp. AN1 after thrombin His-tag removal.
分子名称: Aliphatic amidase
著者Sewell, B.T, Kimani, S.W, Weber, B.W.
登録日2016-05-05
公開日2016-05-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献QM/MM Modelling of Substrate Binding in the Amidase Active Site
To Be Published
4KZF
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The mechanism of the amidases: The effect of the mutation E142L in the amidase from Geobacillus pallidus
分子名称: Aliphatic amidase, CHLORIDE ION
著者Weber, B.W, Sewell, B.T, Kimani, S.W, Varsani, A, Cowan, D.A, Hunter, R.
登録日2013-05-29
公開日2013-08-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013
4LF0
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The E142D mutant of the amidase from Geobacillus pallidus
分子名称: Aliphatic amidase
著者Sewell, B.T, Weber, B.W, Kimani, S.W, Cowan, D.A, Hunter, R, Venter, G.A, Gumbart, J.C, Thuku, R.N, Varsani, A.
登録日2013-06-26
公開日2013-08-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013

 

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