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PDB: 208 results

6U5H
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BU of 6u5h by Molmil
CryoEM Structure of Pyocin R2 - precontracted - hub
Descriptor: Probable bacteriophage protein Pyocin R2
Authors:Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
Deposit date:2019-08-27
Release date:2020-04-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U9G
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BU of 6u9g by Molmil
Structure of Francisella PdpA-VgrG Complex, half-lidded
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y, Zhou, Z.H, Horwitz, M.A.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6U5K
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BU of 6u5k by Molmil
CryoEM Structure of Pyocin R2 - postcontracted - baseplate
Descriptor: Glue PA0627, Sheath Initiator PA0617, Sheath PA0622, ...
Authors:Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
Deposit date:2019-08-27
Release date:2020-04-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U96
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BU of 6u96 by Molmil
Actin phalloidin at BeFx state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Das, S, Ge, P, Durer, Z.A.O, Grintsevich, E.E, Zhou, Z.H, Reisler, E.
Deposit date:2019-09-06
Release date:2020-05-13
Last modified:2020-05-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:D-loop Dynamics and Near-Atomic-Resolution Cryo-EM Structure of Phalloidin-Bound F-Actin.
Structure, 28, 2020
6U5F
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BU of 6u5f by Molmil
CryoEM Structure of Pyocin R2 - precontracted - collar
Descriptor: Collar PA0615, Sheath PA0622, Tube PA0623
Authors:Ge, P, Avaylon, J, Scholl, D, Shneider, M.M, Browning, C, Buth, S.A, Plattner, M, Ding, K, Leiman, P.G, Miller, J.F, Zhou, Z.H.
Deposit date:2019-08-27
Release date:2020-04-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
6U9F
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BU of 6u9f by Molmil
Structure of Francisella PdpA-VgrG Complex, Lidded
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y.X, Horwitz, M.A, Zhou, Z.H.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6ODM
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BU of 6odm by Molmil
Herpes simplex virus type 1 (HSV-1) portal vertex-adjacent capsid/CATC, asymmetric unit
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
Authors:Liu, Y.T, Jih, J, Dai, X.H, Bi, G.Q, Zhou, Z.H.
Deposit date:2019-03-26
Release date:2019-06-19
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome.
Nature, 570, 2019
6WJJ
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BU of 6wjj by Molmil
Anthrax octamer prechannel bound to full-length lethal factor
Descriptor: CALCIUM ION, Lethal factor, Protective antigen, ...
Authors:Zhou, K, Hardenbrook, N.J, Liu, S, Cui, Y.X, Krantz, B.A, Zhou, Z.H.
Deposit date:2020-04-13
Release date:2020-12-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors.
Structure, 28, 2020
3IYL
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BU of 3iyl by Molmil
Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry
Descriptor: Core protein VP6, MYRISTIC ACID, Outer capsid VP4, ...
Authors:Zhang, X, Jin, L, Fang, Q, Hui, W, Zhou, Z.H.
Deposit date:2010-02-02
Release date:2010-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry.
Cell(Cambridge,Mass.), 141, 2010
3IZX
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BU of 3izx by Molmil
3.1 Angstrom cryoEM structure of cytoplasmic polyhedrosis virus
Descriptor: Capsid protein VP1, Structural protein VP3, Viral structural protein 5
Authors:Yu, X, Ge, P, Jiang, J, Atanasov, I, Zhou, Z.H.
Deposit date:2011-01-15
Release date:2011-06-22
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Atomic Model of CPV Reveals the Mechanism Used by This Single-Shelled Virus to Economically Carry Out Functions Conserved in Multishelled Reoviruses.
Structure, 19, 2011
3IYK
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BU of 3iyk by Molmil
Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins
Descriptor: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid, VP2, VP5
Authors:Zhang, X, Boyce, M, Bhattacharya, B, Zhang, X, Schein, S, Roy, P, Zhou, Z.H.
Deposit date:2010-01-25
Release date:2010-04-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Bluetongue virus coat protein VP2 contains sialic acid-binding domains, and VP5 resembles enveloped virus fusion proteins.
Proc.Natl.Acad.Sci.USA, 107, 2010
3J06
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BU of 3j06 by Molmil
CryoEM Helical Reconstruction of TMV
Descriptor: 5'-R(P*AP*UP*G)-3', Coat protein
Authors:Ge, P, Zhou, Z.H.
Deposit date:2011-04-26
Release date:2011-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches.
Proc.Natl.Acad.Sci.USA, 108, 2011
3JB2
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BU of 3jb2 by Molmil
Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP
Descriptor: Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3JB0
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BU of 3jb0 by Molmil
Atomic model of cytoplasmic polyhedrosis virus with GTP
Descriptor: Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, Structural protein VP3, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J27
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BU of 3j27 by Molmil
CryoEM structure of Dengue virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Zhang, X, Ge, P, Yu, X, Brannan, J.M, Bi, G, Zhang, Q, Schein, S, Zhou, Z.H.
Deposit date:2012-09-26
Release date:2012-12-19
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the mature dengue virus at 3.5-A resolution.
Nat.Struct.Mol.Biol., 20, 2012
3J4U
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BU of 3j4u by Molmil
A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls
Descriptor: cementing protein, major capsid protein
Authors:Zhang, X, Guo, H, Jin, L, Czornyj, E, Hodes, A, Hui, W.H, Nieh, A.W, Miller, J.F, Zhou, Z.H.
Deposit date:2013-10-09
Release date:2013-12-25
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution.
Elife, 2, 2013
3JAZ
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BU of 3jaz by Molmil
Atomic model of cytoplasmic polyhedrosis virus with ATP
Descriptor: Capsid protein VP1, Structural protein VP3, Viral structural protein 5
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J9O
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BU of 3j9o by Molmil
CryoEM structure of a type VI secretion system
Descriptor: Intracellular growth locus protein A, Intracellular growth locus protein B
Authors:Clemens, D.L, Ge, P, Lee, B.-Y, Horwitz, M.A, Zhou, Z.H.
Deposit date:2015-02-11
Release date:2015-03-18
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Atomic Structure of T6SS Reveals Interlaced Array Essential to Function.
Cell(Cambridge,Mass.), 160, 2015
3J2V
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BU of 3j2v by Molmil
CryoEM structure of HBV core
Descriptor: PreC/core protein
Authors:Yu, X, Jin, L, Jih, J, Shih, C, Zhou, Z.H.
Deposit date:2013-01-11
Release date:2013-10-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:3.5 angstrom cryoEM Structure of Hepatitis B Virus Core Assembled from Full-Length Core Protein.
Plos One, 8, 2013
3J9R
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BU of 3j9r by Molmil
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Descriptor: sheath
Authors:Ge, P, Scholl, D, Leiman, P.G, Yu, X, Miller, J.F, Zhou, Z.H.
Deposit date:2015-02-17
Release date:2015-04-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states.
Nat.Struct.Mol.Biol., 22, 2015
3JAY
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BU of 3jay by Molmil
Atomic model of transcribing cytoplasmic polyhedrosis virus
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3JB1
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BU of 3jb1 by Molmil
Atomic model of cytoplasmic polyhedrosis virus with SAM
Descriptor: Capsid protein VP1, S-ADENOSYLMETHIONINE, Structural protein VP3, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J9Q
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BU of 3j9q by Molmil
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Descriptor: sheath, tube
Authors:Ge, P, Scholl, D, Leiman, P.G, Yu, X, Miller, J.F, Zhou, Z.H.
Deposit date:2015-02-17
Release date:2015-04-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states.
Nat.Struct.Mol.Biol., 22, 2015
3JB5
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BU of 3jb5 by Molmil
Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
Descriptor: major capsid protein
Authors:Chiou, J, Zhang, X, Marinelli, L.J, Modlin, R.L, Zhou, Z.H.
Deposit date:2015-07-23
Release date:2016-07-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
To be Published
3J9D
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BU of 3j9d by Molmil
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Descriptor: Outer capsid protein VP2, ZINC ION
Authors:Zhang, X, Patel, A, Celma, C, Roy, P, Zhou, Z.H.
Deposit date:2015-01-09
Release date:2015-12-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry.
Nat.Struct.Mol.Biol., 23, 2016

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