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PDB: 124 results

6DAN
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BU of 6dan by Molmil
PhdJ WT 2 Angstroms resolution
Descriptor: CHLORIDE ION, PhdJ
Authors:Medellin, B.P, LeVieux, J.A, Zhang, Y.J, Whitman, C.P.
Deposit date:2018-05-01
Release date:2019-04-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.047 Å)
Cite:Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.
Biochemistry, 57, 2018
6DU3
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BU of 6du3 by Molmil
Structure of Scp1 D96N bound to REST-pS861/4 peptide
Descriptor: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION, REST-pS861
Authors:Burkholder, N.T, Mayfield, J.E, Yu, X, Irani, S, Arce, D.K, Jiang, F, Matthews, W, Xue, Y, Zhang, Y.J.
Deposit date:2018-06-19
Release date:2018-09-26
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Phosphatase activity of small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST).
J. Biol. Chem., 293, 2018
6BLM
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BU of 6blm by Molmil
Crystal Structure of Native Fused 4-OT
Descriptor: 4-oxalocrotonate tautomerase
Authors:LeVieux, J, Baas, B.J, Zhang, Y.J, Whitman, C.P.
Deposit date:2017-11-10
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.488 Å)
Cite:A global view of structure-function relationships in the tautomerase superfamily.
J. Biol. Chem., 293, 2018
6DU2
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BU of 6du2 by Molmil
Structure of Scp1 D96N bound to REST-pS861/4 peptide
Descriptor: MAGNESIUM ION, REST-pS861/4, carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2
Authors:Burkholder, N.T, Mayfield, J.E, Yu, X, Irani, S, Arce, D.K, Jiang, F, Matthews, W, Xue, Y, Zhang, Y.J.
Deposit date:2018-06-19
Release date:2018-09-26
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Phosphatase activity of small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST).
J. Biol. Chem., 293, 2018
7M59
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BU of 7m59 by Molmil
Crystal structure of N2, a member of 4-oxalocrotonate tautomerase (4-OT) family
Descriptor: Tautomerase domain-containing protein
Authors:Medellin, B.P, Moreno, R.Y, Zhang, Y.J.
Deposit date:2021-03-23
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications.
Biochemistry, 60, 2021
7M58
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BU of 7m58 by Molmil
Crystal structure of N1, a member of cis-3-chloroacrylic acid dehalogenase (cis-CaaD) family
Descriptor: SULFATE ION, Tautomerase_3 domain-containing protein
Authors:Medellin, B.P, Moreno, R.Y, Zhang, Y.J.
Deposit date:2021-03-22
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Kinetic and Structural Analysis of Two Linkers in the Tautomerase Superfamily: Analysis and Implications.
Biochemistry, 60, 2021
8DO5
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BU of 8do5 by Molmil
Crystal structure of NahE in complex with intermediate (R)-4-hydroxy-4-(2-hydroxyphenyl)-2-iminobutanoate
Descriptor: (4R)-4-hydroxy-4-(2-hydroxyphenyl)butanoic acid, DIMETHYL SULFOXIDE, Trans-ohydrobenzylidenepyruvate hydratase aldolase
Authors:LeVieux, J.A, Hardtke, H.A, Zhang, Y.J.
Deposit date:2022-07-12
Release date:2022-12-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A mutagenic analysis of NahE, a hydratase-aldolase in the naphthalene degradative pathway.
Arch.Biochem.Biophys., 733, 2023
8T9O
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BU of 8t9o by Molmil
Crystal structure of CF, a heterohexamer of the 4-oxalocrotonate tautomerase (4-OT) family
Descriptor: Tautomerase alpha subunit, Tautomerase beta subunit
Authors:Moreno, R.Y, Zhang, Y.J.
Deposit date:2023-06-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Introduction of Asymmetry in the Fused 4-Oxalocrotonate Tautomerases.
Biochemistry, 62, 2023
8T9P
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BU of 8t9p by Molmil
Crystal Structure of YR, a heterohexamer of the 4-oxalocrotonate tautomerase (4-OT) family
Descriptor: Tautomerase alpha subunit, Tautomerase beta subunit
Authors:Moreno, R.Y, Zhang, Y.J.
Deposit date:2023-06-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Introduction of Asymmetry in the Fused 4-Oxalocrotonate Tautomerases.
Biochemistry, 62, 2023
8T9Q
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BU of 8t9q by Molmil
Crystal structure of fused YR, an asymmetric 4-OT trimer
Descriptor: Tautomerase
Authors:Moreno, R.Y, Zhang, Y.J.
Deposit date:2023-06-24
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Introduction of Asymmetry in the Fused 4-Oxalocrotonate Tautomerases.
Biochemistry, 62, 2023
7S3V
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BU of 7s3v by Molmil
Structure of HsKYNase_66, an evolved variant of human kynureninase with greatly increased activity towards kynurenine
Descriptor: Kynureninase
Authors:Burkholder, N.T, Zhang, Y.J.
Deposit date:2021-09-08
Release date:2022-12-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.249 Å)
Cite:Bypassing evolutionary dead ends and switching the rate-limiting step of a human immunotherapeutic enzyme.
Nat Catal, 5, 2022
7TVK
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BU of 7tvk by Molmil
Structural, Kinetic, and Mechanistic Analysis of the Wild-Type and Inactivated Malonate Semialdehyde Decarboxylase: A Structural Basis for the Decarboxylase and Hydratase Activities
Descriptor: Malonate Semialdehyde Decarboxylase
Authors:Yang, W.J, Zhang, Y.J.
Deposit date:2022-02-05
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Kinetic, Inhibition, and Structural Characterization of a Malonate Semialdehyde Decarboxylase-like Protein from Calothrix sp. PCC 6303: A Gateway to the non-Pro1 Tautomerase Superfamily Members.
Biochemistry, 2022
6VVN
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BU of 6vvn by Molmil
F6 fused 4-OT wild type asymmetric trimer
Descriptor: 4-oxalocrotonate tautomerase, GLYCEROL
Authors:Medellin, B.P, Whitman, C.P, Zhang, Y.J.
Deposit date:2020-02-18
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Structural Basis for the Asymmetry of a 4-Oxalocrotonate Tautomerase Trimer.
Biochemistry, 59, 2020
6VVR
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BU of 6vvr by Molmil
Q0 fused 4-OT wild type symmetric trimer
Descriptor: Tautomerase
Authors:Medellin, B.P, Whitman, C.P, Zhang, Y.J.
Deposit date:2020-02-18
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for the Asymmetry of a 4-Oxalocrotonate Tautomerase Trimer.
Biochemistry, 59, 2020
6VVM
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BU of 6vvm by Molmil
R7 fused 4-OT wild type asymmetric trimer
Descriptor: 4-oxalocrotonate tautomerase family enzyme
Authors:Medellin, B.P, Whitman, C.P, Zhang, Y.J.
Deposit date:2020-02-18
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Basis for the Asymmetry of a 4-Oxalocrotonate Tautomerase Trimer.
Biochemistry, 59, 2020
6VVW
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BU of 6vvw by Molmil
W0 fused 4-OT wild type symmetric trimer
Descriptor: Tautomerase
Authors:Medellin, B.P, Whitman, C.P, Zhang, Y.J.
Deposit date:2020-02-18
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for the Asymmetry of a 4-Oxalocrotonate Tautomerase Trimer.
Biochemistry, 59, 2020
5UIF
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BU of 5uif by Molmil
Crystal Structure of Native Ps01740
Descriptor: Ps01740
Authors:LeVieux, J, Baas, B.J, Zhang, Y.J, Whitman, C.P.
Deposit date:2017-01-13
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Kinetic and structural characterization of a cis-3-Chloroacrylic acid dehalogenase homologue in Pseudomonas sp. UW4: A potential step between subgroups in the tautomerase superfamily.
Arch. Biochem. Biophys., 636, 2017
5V43
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BU of 5v43 by Molmil
Engineered human IgG Fc domain aglyco801
Descriptor: Ig gamma-1 chain C region
Authors:Yan, W, Marshall, N, Zhang, Y.J.
Deposit date:2017-03-08
Release date:2017-06-21
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:IgG Fc domains that bind C1q but not effector Fc gamma receptors delineate the importance of complement-mediated effector functions.
Nat. Immunol., 18, 2017
5UNQ
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BU of 5unq by Molmil
Crystal Structure of Pt0534 Inactivated by 2-Oxo-3-pentynoate
Descriptor: Putative tautomerase
Authors:LeVieux, J, Baas, B.J, Zhang, Y.J, Whitman, C.P.
Deposit date:2017-01-31
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.976 Å)
Cite:A global view of structure-function relationships in the tautomerase superfamily.
J. Biol. Chem., 293, 2018
5V4E
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BU of 5v4e by Molmil
Engineered human IgG Fc domain glyco801 (Fc801)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Yan, W, Marshall, N, Zhang, Y.J.
Deposit date:2017-03-09
Release date:2017-06-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.216 Å)
Cite:IgG Fc domains that bind C1q but not effector Fc gamma receptors delineate the importance of complement-mediated effector functions.
Nat. Immunol., 18, 2017
8UMK
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BU of 8umk by Molmil
EPSPS TIPS variant complexed with glyphosate and shikimate-3-phosphate
Descriptor: 3-phosphoshikimate 1-carboxyvinyltransferase, GLYPHOSATE, SHIKIMATE-3-PHOSPHATE
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-18
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system
Proc.Natl.Acad.Sci.USA, 121, 2024
8UMM
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BU of 8umm by Molmil
EPSPS TIPS K296R variant complexed with glyphosate and shikimate-3-phosphate
Descriptor: 3-phosphoshikimate 1-carboxyvinyltransferase, GLYPHOSATE, SHIKIMATE-3-PHOSPHATE
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-18
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system
Proc.Natl.Acad.Sci.USA, 121, 2024
8UMN
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BU of 8umn by Molmil
EPSPS TIPS P126S K296R variant complexed with glyphosate and shikimate-3-phosphate
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-phosphoshikimate 1-carboxyvinyltransferase, GLYCEROL, ...
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-18
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system
Proc.Natl.Acad.Sci.USA, 121, 2024
8UML
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BU of 8uml by Molmil
EPSPS TIPS P126S variant complexed with glyphosate and shikimate-3-phosphate
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-phosphoshikimate 1-carboxyvinyltransferase, GLYPHOSATE, ...
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-18
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system
Proc.Natl.Acad.Sci.USA, 121, 2024
8UMJ
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BU of 8umj by Molmil
Wild type EPSP synthase complexed with glyphosate and shikimate-3-phosphate
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-phosphoshikimate 1-carboxyvinyltransferase, GLYPHOSATE, ...
Authors:Kim, W, Zhang, Y.J.
Deposit date:2023-10-17
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system
Proc.Natl.Acad.Sci.USA, 121, 2024

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PDB entries from 2024-08-28

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