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PDB: 2430 件

3GFJ
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Crystal structure of the ST1710 mutant (R89A) protein
分子名称: 146aa long hypothetical transcriptional regulator, CALCIUM ION
著者Kumarevel, T, Tanaka, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-27
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
2R1G
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Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
分子名称: 16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
著者Datta, P.P, Wilson, D.N, Kawazoe, M, Swami, N.K, Kaminishi, T, Sharma, M.R, Booth, T.M, Takemoto, C, Fucini, P, Yokoyama, S, Agrawal, R.K.
登録日2007-08-22
公開日2008-03-18
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (12.5 Å)
主引用文献Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2R1C
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Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
分子名称: Ribosome-binding factor A
著者Datta, P.P, Wilson, D.N, Kawazoe, M, Swami, N.K, Kaminishi, T, Sharma, M.R, Booth, T.M, Takemoto, C, Fucini, P, Yokoyama, S, Agrawal, R.K.
登録日2007-08-22
公開日2008-03-18
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (12.5 Å)
主引用文献Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
1NZ8
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Solution Structure of the N-utilization substance G (NusG) N-terminal (NGN) domain from Thermus thermophilus
分子名称: TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
著者Reay, P, Yamasaki, K, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-02-17
公開日2004-04-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus
Proteins, 56, 2004
1B7F
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SXL-LETHAL PROTEIN/RNA COMPLEX
分子名称: PROTEIN (SXL-LETHAL PROTEIN), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3')
著者Handa, N, Nureki, O, Kurimoto, K, Kim, I, Sakamoto, H, Shimura, Y, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-01-23
公開日1999-05-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein.
Nature, 398, 1999
2RSJ
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Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2012-03-07
公開日2013-03-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
To be Published
2RSH
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Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2012-03-07
公開日2013-03-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
To be Published
1NZ9
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Solution Structure of the N-utilization substance G (NusG) C-terminal (NGC) domain from Thermus thermophilus
分子名称: TRANSCRIPTION ANTITERMINATION PROTEIN NUSG
著者Reay, P, Yamasaki, K, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-02-17
公開日2004-04-06
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus
Proteins, 56, 2004
2RPR
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Solution structure of the fifth FLYWCH domain of FLYWCH-type zinc finger-containing protein 1
分子名称: FLYWCH-type zinc finger-containing protein 1, ZINC ION
著者Enomoto, M, Saito, K, Tochio, N, Kigawa, T, Yokoyama, S, Nameki, N.
登録日2008-07-24
公開日2009-08-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the fifth FLYWCH domain of FLYWCH-type zinc finger-containing protein 1
To be Published
1FL0
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CRYSTAL STRUCTURE OF THE EMAP2/RNA-BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX
分子名称: ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II
著者Renault, L, Kerjan, P, Pasqualato, S, Menetrey, J, Robinson, J.-C, Kawaguchi, S, Vassylyev, D.G, Yokoyama, S, Mirande, M, Cherfils, J.
登録日2000-08-11
公開日2000-12-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry.
EMBO J., 20, 2001
2U2F
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SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN OF HU2AF65
分子名称: PROTEIN (SPLICING FACTOR U2AF 65 KD SUBUNIT)
著者Ito, T, Muto, Y, Green, M.R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-05-26
公開日1999-08-20
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65)).
EMBO J., 18, 1999
2RSF
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Complex structure of WWE in RNF146 with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, E3 ubiquitin-protein ligase RNF146
著者He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2012-01-31
公開日2013-03-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Complex structure of WWE domain in RNF146 with ATP
To be Published
2SXL
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SEX-LETHAL RBD1, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: SEX-LETHAL PROTEIN
著者Inoue, M, Muto, Y, Sakamoto, H, Kigawa, T, Takio, K, Shimura, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1997-07-16
公開日1998-07-22
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.
J.Mol.Biol., 272, 1997
2RS7
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Solution structure of the second dsRBD from RNA helicase A
分子名称: ATP-dependent RNA helicase A
著者Nagata, T, Muto, Y, Tsuda, K, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-11-29
公開日2012-03-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of the double-stranded RNA-binding domains from RNA helicase A
Proteins, 80, 2012
2RSI
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Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2012-03-07
公開日2013-03-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
To be Published
2RUG
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Refined solution structure of the first RNA recognition motif domain in CPEB3
分子名称: Cytoplasmic polyadenylation element-binding protein 3
著者Tsuda, K, Kuwasako, K, Nagata, T, Takahashi, M, Kigawa, T, Kobayashi, N, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2014-04-15
公開日2014-09-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3.
Proteins, 82, 2014
2RS6
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Solution structure of the N-terminal dsRBD from RNA helicase A
分子名称: ATP-dependent RNA helicase A
著者Nagata, T, Muto, Y, Tsuda, K, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-11-29
公開日2012-03-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of the double-stranded RNA-binding domains from RNA helicase A
Proteins, 80, 2012
2RS9
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Solution structure of the bromodomain of human BRPF1 in complex with histone H4K5ac peptide
分子名称: Acetylated lysine 5 of peptide from Histone H4, Peregrin
著者Qin, X, Nagashima, T, Umehara, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-12-08
公開日2012-12-12
最終更新日2024-10-09
実験手法SOLUTION NMR
主引用文献Site-specific histone recognition by the bromodomain of Brpf1 and the role in MOZ/MORF histone acetyltransferase complexes
To be Published
1OI7
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The Crystal Structure of Succinyl-CoA synthetase alpha subunit from Thermus Thermophilus
分子名称: SUCCINYL-COA SYNTHETASE ALPHA CHAIN
著者Takahashi, H, Tokunaga, Y, Kuroishi, C, Babayeva, N, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H.
登録日2003-06-10
公開日2003-07-04
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献The Crystal Structure of Succinyl-Coa Synthetase from Thermus Thermophilus
To be Published
1BW6
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HUMAN CENTROMERE PROTEIN B (CENP-B) DNA BINDIGN DOMAIN RP1
分子名称: PROTEIN (CENTROMERE PROTEIN B)
著者Iwahara, J, Kigawa, T, Kitagawa, K, Masumoto, H, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1998-09-30
公開日1998-10-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A helix-turn-helix structure unit in human centromere protein B (CENP-B).
EMBO J., 17, 1998
3CM0
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Crystal structure of adenylate kinase from Thermus thermophilus HB8
分子名称: Adenylate kinase
著者Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-20
公開日2008-09-23
最終更新日2024-08-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of adenylate kinase from Thermus thermophilus HB8.
To be Published
3CPQ
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Crystal Structure of L30e a ribosomal protein from Methanocaldococcus jannaschii DSM2661 (MJ1044)
分子名称: 50S ribosomal protein L30e
著者Jeyakanthan, J, Sarani, R, Mridula, P, Sekar, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-04-01
公開日2009-04-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of L30e a ribosomal protein from Methanocaldococcus jannaschii DSM2661 (MJ1044)
To be Published
1GAX
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE
分子名称: N-[VALINYL]-N'-[ADENOSYL]-DIAMINOSUFONE, TRNA(VAL), VALYL-TRNA SYNTHETASE, ...
著者Fukai, S, Nureki, O, Sekine, S, Shimada, A, Tao, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2000-06-23
公開日2000-12-06
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase.
Cell(Cambridge,Mass.), 103, 2000
2UXS
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2.7A crystal structure of inorganic pyrophosphatase (Rv3628) from Mycobacterium tuberculosis at pH 7.5
分子名称: INORGANIC PYROPHOSPHATASE, PHOSPHATE ION
著者Cole, R.E, Cianci, M, Hall, J.F, Matsuda, T, Kigawa, T, Yokoyama, S, Hasnain, S.S, Tabernero, L.
登録日2007-03-29
公開日2008-05-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of Rv3628: An Inorganic Pyrophosphatase from Mycobacterium Tuberculosis
To be Published
1GD7
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CRYSTAL STRUCTURE OF A BIFUNCTIONAL PROTEIN (CSAA) WITH EXPORT-RELATED CHAPERONE AND TRNA-BINDING ACTIVITIES.
分子名称: CSAA PROTEIN
著者Shibata, T, Inoue, Y, Vassylyev, D.G, Kawaguchi, S, Yokoyama, S, Muller, J, Linde, D, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2000-09-22
公開日2001-09-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus.
EMBO J., 20, 2001

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