3AZW
| Crystal structure of the receptor binding domain | Descriptor: | D/C mosaic neurotoxin, SULFATE ION | Authors: | Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I. | Deposit date: | 2011-06-02 | Release date: | 2011-12-28 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.99 Å) | Cite: | Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism Biochem.Biophys.Res.Commun., 411, 2011
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3ATK
| Crystal structure of trypsin complexed with cycloheptanamine | Descriptor: | CALCIUM ION, Cationic trypsin, DIMETHYL SULFOXIDE, ... | Authors: | Yamane, J, Yao, M, Tanaka, I. | Deposit date: | 2011-01-05 | Release date: | 2011-08-24 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities J.Appl.Crystallogr., 44, 2011
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3B0P
| tRNA-dihydrouridine synthase from Thermus thermophilus | Descriptor: | FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase | Authors: | Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2011-06-12 | Release date: | 2011-12-14 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Molecular basis of dihydrouridine formation on tRNA Proc.Natl.Acad.Sci.USA, 108, 2011
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2ZB9
| Crystal structure of TetR family transcription regulator SCO0332 | Descriptor: | Putative transcriptional regulator | Authors: | Okada, U, Kondo, K, Watanabe, N, Yao, M, Tanaka, I. | Deposit date: | 2007-10-16 | Release date: | 2008-01-29 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structural and functional analysis of the TetR-family transcriptional regulator SCO0332 from Streptomyces coelicolor ACTA CRYSTALLOGR.,SECT.D, 64, 2008
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3ATL
| Crystal structure of trypsin complexed with benzamidine | Descriptor: | BENZAMIDINE, CALCIUM ION, Cationic trypsin, ... | Authors: | Yamane, J, Yao, M, Tanaka, I. | Deposit date: | 2011-01-05 | Release date: | 2011-08-24 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities J.Appl.Crystallogr., 44, 2011
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3A85
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3A80
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3A8C
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2ZCX
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2ZPA
| Crystal Structure of tRNA(Met) Cytidine Acetyltransferase | Descriptor: | ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ... | Authors: | Chimnaronk, S, Manita, T, Yao, M, Tanaka, I. | Deposit date: | 2008-07-08 | Release date: | 2009-04-07 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon Embo J., 28, 2009
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2ZDS
| Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2) | Descriptor: | Putative DNA-binding protein | Authors: | Begum, P, Gao, Y.G, Sakai, N, Yao, M, Watanabe, N, Tanaka, I. | Deposit date: | 2007-11-27 | Release date: | 2008-12-02 | Last modified: | 2019-10-16 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of SCO6571 from Streptomyces coelicolor A3(2). Protein Pept.Lett., 15, 2008
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3VZQ
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3VI6
| Crystal Structure of human ribosomal protein L30e | Descriptor: | 60S ribosomal protein L30, FORMIC ACID | Authors: | Kawaguchi, A, Ose, T, Yao, M, Tanaka, I. | Deposit date: | 2011-09-21 | Release date: | 2011-12-21 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.59 Å) | Cite: | Crystallization and preliminary X-ray structure analysis of human ribosomal protein L30e Acta Crystallogr.,Sect.F, 67, 2011
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3VSE
| Crystal structure of methyltransferase | Descriptor: | Putative uncharacterized protein, S-ADENOSYL-L-HOMOCYSTEINE | Authors: | Kita, S, Tanaka, Y, Yao, M, Tanaka, I. | Deposit date: | 2012-04-25 | Release date: | 2013-04-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.099 Å) | Cite: | Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus Protein Pept.Lett., 20, 2012
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3VZP
| Crystal structure of PhaB from Ralstonia eutropha | Descriptor: | 1,4-DIETHYLENE DIOXIDE, Acetoacetyl-CoA reductase, GLYCEROL, ... | Authors: | Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2012-10-15 | Release date: | 2013-08-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.792 Å) | Cite: | Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics Appl.Environ.Microbiol., 79, 2013
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3VZS
| Crystal structure of PhaB from Ralstonia eutropha in complex with Acetoacetyl-CoA and NADP | Descriptor: | ACETOACETYL-COENZYME A, Acetoacetyl-CoA reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2012-10-15 | Release date: | 2013-08-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.14 Å) | Cite: | Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics Appl.Environ.Microbiol., 79, 2013
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3W79
| Crystal Structure of azoreductase AzrC in complex with sulfone-modified azo dye Orange I | Descriptor: | 4-[(E)-(4-hydroxynaphthalen-1-yl)diazenyl]benzenesulfonic acid, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase | Authors: | Ogata, D, Yu, J, Ooi, T, Yao, M. | Deposit date: | 2013-02-27 | Release date: | 2014-02-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism. Acta Crystallogr.,Sect.D, 70, 2014
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3WBK
| crystal structure analysis of eukaryotic translation initiation factor 5B and 1A complex | Descriptor: | Eukaryotic translation initiation factor 1A, Eukaryotic translation initiation factor 5B | Authors: | Zheng, A, Yamamoto, R, Ose, T, Yu, J, Tanaka, I, Yao, M. | Deposit date: | 2013-05-20 | Release date: | 2014-11-19 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | X-ray structures of eIF5B and the eIF5B-eIF1A complex: the conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A Acta Crystallogr.,Sect.D, 70, 2014
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3WA1
| Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus | Descriptor: | BinB protein | Authors: | Srisucharitpanit, K, Yao, M, Chimnaronk, S, Promdonkoy, B, Boonserm, P, Tanaka, I. | Deposit date: | 2013-04-22 | Release date: | 2014-07-02 | Last modified: | 2014-10-08 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus Proteins, 82, 2014
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3W9V
| Crystal structure of refolded DING protein | Descriptor: | GLYCEROL, PHOSPHATE ION, Phosphate-binding protein | Authors: | Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M. | Deposit date: | 2013-04-17 | Release date: | 2013-10-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.031 Å) | Cite: | Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation. J.SYNCHROTRON RADIAT., 20, 2013
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3WGL
| STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GDP, DeltaT7GAN-GDP | Descriptor: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE | Authors: | Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M. | Deposit date: | 2013-08-06 | Release date: | 2013-12-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.066 Å) | Cite: | Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop J.Biol.Chem., 289, 2014
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3WKR
| Crystal structure of the SepCysS-SepCysE complex from Methanocaldococcus jannaschii | Descriptor: | O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481 | Authors: | Nakazawa, Y, Asano, N, Nakamura, A, Yao, M. | Deposit date: | 2013-10-30 | Release date: | 2014-07-16 | Last modified: | 2022-08-24 | Method: | X-RAY DIFFRACTION (2.803 Å) | Cite: | Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea. Proc.Natl.Acad.Sci.USA, 111, 2014
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3WT0
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3WGM
| STAPHYLOCOCCUS AUREUS FTSZ T7 mutant substituted for GAN bound with GTP, DeltaT7GAN-GTP | Descriptor: | Cell division protein FtsZ, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION | Authors: | Han, X, Matsui, T, Yu, J, Tanaka, I, Yao, M. | Deposit date: | 2013-08-06 | Release date: | 2013-12-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.091 Å) | Cite: | Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop J.Biol.Chem., 289, 2014
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3W7A
| Crystal Structure of azoreductase AzrC fin complex with sulfone-modified azo dye Acid Red 88 | Descriptor: | 4-[(E)-(2-hydroxynaphthalen-1-yl)diazenyl]naphthalene-1-sulfonic acid, CALCIUM ION, FLAVIN MONONUCLEOTIDE, ... | Authors: | Yu, J, Ogata, D, Ooi, T, Yao, M. | Deposit date: | 2013-02-27 | Release date: | 2014-02-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structures of AzrA and of AzrC complexed with substrate or inhibitor: insight into substrate specificity and catalytic mechanism. Acta Crystallogr.,Sect.D, 70, 2014
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