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PDB: 72 results

4GOY
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BU of 4goy by Molmil
The crystal structure of human fascin 1 K41A mutant
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, BROMIDE ION, CHLORIDE ION, ...
Authors:Yang, S.Y, Huang, F.K, Huang, J, Chen, S, Jakoncic, J, Leo-Macias, A, Diaz-Avalos, R, Chen, L, Zhang, J.J, Huang, X.Y.
Deposit date:2012-08-20
Release date:2012-11-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular mechanism of fascin function in filopodial formation.
J.Biol.Chem., 288, 2013
4GP3
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BU of 4gp3 by Molmil
The crystal structure of human fascin 1 K358A mutant
Descriptor: BROMIDE ION, CHLORIDE ION, Fascin, ...
Authors:Yang, S.Y, Huang, F.K, Huang, J, Chen, S, Jakoncic, J, Leo-Macias, A, Diaz-Avalos, R, Chen, L, Zhang, J.J, Huang, X.Y.
Deposit date:2012-08-20
Release date:2012-11-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular mechanism of fascin function in filopodial formation.
J.Biol.Chem., 288, 2013
4GP0
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BU of 4gp0 by Molmil
The crystal structure of human fascin 1 R149A K150A R151A mutant
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BROMIDE ION, ...
Authors:Yang, S.Y, Huang, F.K, Huang, J, Chen, S, Jakoncic, J, Leo-Macias, A, Diaz-Avalos, R, Chen, L, Zhang, J.J, Huang, X.Y.
Deposit date:2012-08-20
Release date:2012-11-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism of fascin function in filopodial formation.
J.Biol.Chem., 288, 2013
4GOV
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BU of 4gov by Molmil
The crystal structure of human fascin 1 S39D mutant
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, BROMIDE ION, CHLORIDE ION, ...
Authors:Yang, S.Y, Huang, F.K, Huang, J, Chen, S, Jakoncic, J, Leo-Macias, A, Diaz-Avalos, R, Chen, L, Zhang, J.J, Huang, X.Y.
Deposit date:2012-08-20
Release date:2012-11-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular mechanism of fascin function in filopodial formation.
J.Biol.Chem., 288, 2013
8I3Q
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BU of 8i3q by Molmil
Cryo-EM structure of Cas12g-sgRNA binary complex
Descriptor: Cas12g, RNA (139-MER), ZINC ION
Authors:Ouyang, S.Y, Liu, M.X, Li, Z.K.
Deposit date:2023-01-17
Release date:2023-09-06
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural transitions upon guide RNA binding and their importance in Cas12g-mediated RNA cleavage.
Plos Genet., 19, 2023
6L00
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BU of 6l00 by Molmil
Crystal structure of the cell-wall binding domain (CBD) of endolysin LysIME-EF1
Descriptor: Lysin
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2019-09-25
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.
Plos Pathog., 16, 2020
6M6W
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BU of 6m6w by Molmil
Crystal structure the toxin-antitoxin MntA-HpeT mutant-Y104A
Descriptor: Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-03-16
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6M6V
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BU of 6m6v by Molmil
Crystal structure the toxin-antitoxin MntA-HepT
Descriptor: RNA (5'-R(P*AP*AP*A)-3'), Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-03-16
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6M6U
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BU of 6m6u by Molmil
Crystal structure the toxin-antitoxin MntA-HpeT mutant-D39ED41E
Descriptor: Toxin-antitoxin system antitoxin MntA family, Toxin-antitoxin system toxin HepN family
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-03-16
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.349 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
7BU0
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BU of 7bu0 by Molmil
Crystal structure of a OTU deubiquitinase in complex with Ub-PA
Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-04-03
Release date:2020-11-18
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes.
Elife, 9, 2020
7BXO
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BU of 7bxo by Molmil
Crystal structure of the toxin-antitoxin with AMP-PNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Toxin-antitoxin system antidote Mnt family, ...
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-04-20
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
7CNB
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BU of 7cnb by Molmil
Crystal structure of Gp16 C-terminal domain from Bacillus virus phi29
Descriptor: DNA packaging protein
Authors:Ouyang, S.Y, Saeed, A.F.U.H.
Deposit date:2020-07-30
Release date:2021-03-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural Insights into gp16 ATPase in the Bacteriophage φ29 DNA Packaging Motor.
Biochemistry, 60, 2021
7WCF
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BU of 7wcf by Molmil
Crystal structure of the kinase with AMP-PNP
Descriptor: HipA_C domain-containing protein, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Ouyang, S.Y, Zhen, X.
Deposit date:2021-12-20
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3636 Å)
Cite:Molecular mechanism of toxin neutralization in the HipBST toxin-antitoxin system of Legionella pneumophila.
Nat Commun, 13, 2022
7XVG
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BU of 7xvg by Molmil
Cryo-EM structure of binary complex of plant NLR Sr35 and effector AvrSr35
Descriptor: AvrSr35, Sr35
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-05-23
Release date:2022-09-28
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XX2
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BU of 7xx2 by Molmil
Cryo-EM structure of Sr35 resistosome induced by AvrSr35 R381A
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, CNL9
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-05-28
Release date:2022-11-02
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XE0
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BU of 7xe0 by Molmil
Cryo-EM structure of plant NLR Sr35 resistosome
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, Sr35
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-03-29
Release date:2022-09-28
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XDS
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BU of 7xds by Molmil
Crystal structure of wheat stem rust effector AvrSr35
Descriptor: AvrSr35
Authors:Ouyang, S.Y, Zhao, Y.B.
Deposit date:2022-03-28
Release date:2022-09-28
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
6IM4
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BU of 6im4 by Molmil
Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages
Descriptor: AimR transcriptional regulator, GLY-MET-PRO-ARG-GLY-ALA
Authors:Ouyang, S.Y.
Deposit date:2018-10-22
Release date:2019-01-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages.
Protein Cell, 10, 2019
6JKY
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BU of 6jky by Molmil
Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila
Descriptor: MvcA, Ub, Ubiquitin-conjugating enzyme E2 N
Authors:Ouyang, S.Y, Guan, H.
Deposit date:2019-03-03
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.454 Å)
Cite:Legionella pneumophila regulates the activity of UBE2N by deamidase-mediated deubiquitination.
Embo J., 39, 2020
6IST
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BU of 6ist by Molmil
Crystal structure of a wild type endolysin LysIME-EF1
Descriptor: CALCIUM ION, Lysin
Authors:Ouyang, S.Y.
Deposit date:2018-11-19
Release date:2019-11-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.
Plos Pathog., 16, 2020
6K4L
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BU of 6k4l by Molmil
Crystal structure of Se-labelled SidJ complex with CaM at 2.95 A
Descriptor: CALCIUM ION, CHLORIDE ION, Calmodulin-1, ...
Authors:Ouyang, S.Y.
Deposit date:2019-05-24
Release date:2019-07-24
Last modified:2019-08-28
Method:X-RAY DIFFRACTION (2.949 Å)
Cite:Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
6K4R
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BU of 6k4r by Molmil
Crystal structure of SidJ-CaM-AMP ternary complex at 3.11 A
Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
Authors:Ouyang, S.Y.
Deposit date:2019-05-26
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.109 Å)
Cite:Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
6K4K
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BU of 6k4k by Molmil
Crystal structure of SidJ-CaM binary complex at 2.71 A
Descriptor: CALCIUM ION, Calmodulin-1, SidJ
Authors:Ouyang, S.Y.
Deposit date:2019-05-24
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.715 Å)
Cite:Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
8K2E
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BU of 8k2e by Molmil
Crystal structure of YTHDC1 and Y3 complex
Descriptor: 2-chloranyl-6-(4-fluoranylphenoxy)benzoic acid, SULFATE ION, YTH domain-containing protein 1
Authors:Zhang, H.L, Yang, S.Y.
Deposit date:2023-07-12
Release date:2024-07-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:PocketFlow is a data-and-knowledge-driven structure-based molecular generative model
Nat. Mach. Intell., 6, 2024
7C7P
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BU of 7c7p by Molmil
Crystal structure of the SARS-CoV-2 main protease in complex with Telaprevir
Descriptor: (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide, 3C-like proteinase, CHLORIDE ION
Authors:Zeng, R, Qiao, J.X, Wang, Y.F, Li, Y.S, Yao, R, Yang, S.Y, Lei, J.
Deposit date:2020-05-26
Release date:2020-07-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:SARS-CoV-2 M pro inhibitors with antiviral activity in a transgenic mouse model.
Science, 371, 2021

 

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