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PDB: 878 件
8TAP
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BU of 8tap by Molmil
Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6)
分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ...
著者Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
登録日2023-06-27
公開日2023-12-20
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TB8
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BU of 8tb8 by Molmil
Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)
分子名称: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*GP*AP*CP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A*(HT1))-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
著者Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
登録日2023-06-28
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TAJ
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BU of 8taj by Molmil
Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x6)
分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*AP*AP*TP*TP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*T)-3'), ...
著者Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
登録日2023-06-27
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TA9
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BU of 8ta9 by Molmil
Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x6)
分子名称: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, COBALT (II) ION, DNA (5'-D(*GP*AP*GP*AP*AP*TP*TP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A*(DAP))-3'), ...
著者Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
登録日2023-06-27
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
3HD2
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BU of 3hd2 by Molmil
Crystal structure of E. coli HPPK(Q50A) in complex with MgAMPCPP and pterin
分子名称: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, CHLORIDE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-05-06
公開日2010-05-19
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Role of loop coupling in enzymatic catalysis and conformational dynamics
To be Published
1BLR
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BU of 1blr by Molmil
NMR SOLUTION STRUCTURE OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II, 22 STRUCTURES
分子名称: CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II
著者Wang, L, Li, Y, Abilddard, F, Yan, H, Markely, J.
登録日1998-07-20
公開日1999-01-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR solution structure of type II human cellular retinoic acid binding protein: implications for ligand binding.
Biochemistry, 37, 1998
8SV5
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BU of 8sv5 by Molmil
Crystal structure of Bacillus anthracis dihydroneopterin aldolase in complex with 6-hydroxymethyl-7,8-dihydropterin
分子名称: 1,2-ETHANEDIOL, 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 7,8-dihydroneopterin aldolase
著者Shaw, G.X, Li, Y, Yan, H, Ji, X.
登録日2023-05-15
公開日2023-06-07
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Crystal structure of Bacillus anthracis dihydroneopterin aldolase in complex with 6-hydroxymethyl-7,8-dihydropterin
To be published
5ZHY
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BU of 5zhy by Molmil
Structural characterization of the HCoV-229E fusion core
分子名称: Spike glycoprotein
著者Zhang, W, Zheng, Q, Yan, M, Chen, X, Yang, H, Zhou, W, Rao, Z.
登録日2018-03-13
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.441 Å)
主引用文献Structural characterization of the HCoV-229E fusion core.
Biochem. Biophys. Res. Commun., 497, 2018
3HCX
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BU of 3hcx by Molmil
Crystal structure of E. coli HPPK(N10A)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, CHLORIDE ION
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-05-06
公開日2010-05-19
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Role of loop coupling in enzymatic catalysis and conformational dynamics
To be Published
5XKA
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BU of 5xka by Molmil
Crystal structure of M.tuberculosis PknI kinase domain
分子名称: Serine/threonine-protein kinase PknI
著者Yan, Q, Jiang, D, Qian, L, Zhang, Q, Zhang, W, Zhou, W, Mi, K, Guddat, L, Yang, H, Rao, Z.
登録日2017-05-06
公開日2018-05-16
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Structural Insight into the Activation of PknI Kinase from M. tuberculosis via Dimerization of the Extracellular Sensor Domain.
Structure, 25, 2017
3HD1
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BU of 3hd1 by Molmil
Crystal structure of E. coli HPPK(N10A) in complex with MgAMPCPP
分子名称: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, CHLORIDE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-05-06
公開日2010-05-19
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Role of loop coupling in enzymatic catalysis and conformational dynamics
To be Published
1BM5
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BU of 1bm5 by Molmil
THE SOLUTION STRUCTURE OF A SITE-DIRECTED MUTANT (R111M) OF HUMAN CELLULAR RETIONIC ACID BINDING PROTEIN-TYPE II, NMR, 31 STRUCTURES
分子名称: CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II
著者Wang, H, Yan, H.
登録日1998-07-28
公開日1999-01-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR study suggests a major role for Arg111 in maintaining the structure and dynamical properties of type II human cellular retinoic acid binding protein.
Biochemistry, 37, 1998
8SSX
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BU of 8ssx by Molmil
Crystal structure of Bacillus anthracis dihydrofolate reductase at 1.65-A resolution
分子名称: 1,2-ETHANEDIOL, Dihydrofolate reductase, SULFATE ION
著者Shaw, G.X, Li, Y, Wu, Y, Yan, H, Ji, X.
登録日2023-05-09
公開日2023-05-17
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of Bacillus anthracis dihydrofolate reductase at 1.65-A resolution
To be published
1RWT
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BU of 1rwt by Molmil
Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Liu, Z, Yan, H, Wang, K, Kuang, T, Zhang, J, Gui, L, An, X, Chang, W.
登録日2003-12-17
公開日2004-03-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Crystal structure of spinach major light-harvesting complex at 2.72 A resolution
Nature, 428, 2004
3B4R
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BU of 3b4r by Molmil
Site-2 Protease from Methanocaldococcus jannaschii
分子名称: Putative zinc metalloprotease MJ0392, ZINC ION
著者Jeffrey, P.D, Feng, L, Yan, H, Wu, Z, Yan, N, Wang, Z, Shi, Y.
登録日2007-10-24
公開日2008-01-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure of a site-2 protease family intramembrane metalloprotease.
Science, 318, 2007
1L4U
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BU of 1l4u by Molmil
CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
著者Gu, Y, Reshetnikova, L, Li, Y, Wu, Y, Yan, H, Singh, S, Ji, X.
登録日2002-03-05
公開日2002-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis.
J.Mol.Biol., 319, 2002
3HSG
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BU of 3hsg by Molmil
Crystal structure of E. coli HPPK(Y53A) in complex with MgAMPCPP
分子名称: ACETATE ION, CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-10
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published
1L4Y
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BU of 1l4y by Molmil
CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Gu, Y, Reshetnikova, L, Li, Y, Wu, Y, Yan, H, Singh, S, Ji, X.
登録日2002-03-06
公開日2002-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis.
J.Mol.Biol., 319, 2002
5KEK
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BU of 5kek by Molmil
Structure Determination of a Self-Assembling DNA Crystal
分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
著者Simmons, C.R, Birktoft, J.J, Seeman, N.C, Yan, H.
登録日2016-06-09
公開日2016-08-10
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.098 Å)
主引用文献Construction and Structure Determination of a Three-Dimensional DNA Crystal.
J.Am.Chem.Soc., 138, 2016
5KEO
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BU of 5keo by Molmil
Structure Determination of a Self-Assembling DNA Crystal
分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
著者Simmons, C.R, Birktoft, J.J, Seeman, N.C, Yan, H.
登録日2016-06-09
公開日2016-08-10
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Construction and Structure Determination of a Three-Dimensional DNA Crystal.
J.Am.Chem.Soc., 138, 2016
3KUH
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BU of 3kuh by Molmil
Crystal structure of E. coli HPPK(H115A) in complex with AMPCPP and HP
分子名称: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-11-27
公開日2010-11-24
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Roles of residues E77 and H115 in E. coli HPPK
To be Published
3HSD
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BU of 3hsd by Molmil
Crystal structure of E. coli HPPK(Y53A)
分子名称: CHLORIDE ION, GLYCEROL, HPPK, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-10
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.652 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK.
To be Published
3HSZ
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BU of 3hsz by Molmil
Crystal structure of E. coli HPPK(F123A)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CHLORIDE ION, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-11
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published
3HT0
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BU of 3ht0 by Molmil
Crystal structure of E. coli HPPK(F123A) in complex with MgAMPCPP
分子名称: CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, HPPK, ...
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-11
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published
3HSJ
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BU of 3hsj by Molmil
Crystal structure of E. coli HPPK(N55A)
分子名称: ACETATE ION, GLYCEROL, HPPK
著者Blaszczyk, J, Li, Y, Yan, H, Ji, X.
登録日2009-06-10
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK
To be Published

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件を2024-07-17に公開中

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