5WU4
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![BU of 5wu4 by Molmil](/molmil-images/mine/5wu4) | |
5WU3
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![BU of 5wu3 by Molmil](/molmil-images/mine/5wu3) | Crystal structure of human Tut1 bound with MgUTP, form II | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ... | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2016-12-16 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.703 Å) | Cite: | Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
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8IE2
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![BU of 8ie2 by Molmil](/molmil-images/mine/8ie2) | Crystal structure of Lactiplantibacillus plantarum GlyRS | Descriptor: | Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2023-02-15 | Release date: | 2023-06-07 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria. J.Biochem., 174, 2023
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8IDF
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4WBY
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![BU of 4wby by Molmil](/molmil-images/mine/4wby) | tRNA-processing enzyme (apo form I) | Descriptor: | GLYCEROL, Poly A polymerase, SULFATE ION | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WC4
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![BU of 4wc4 by Molmil](/molmil-images/mine/4wc4) | tRNA-processing enzyme complex 2 | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3.501 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WC5
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![BU of 4wc5 by Molmil](/molmil-images/mine/4wc5) | Structure of tRNA-processing enzyme complex 3 | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.41 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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3LLH
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![BU of 3llh by Molmil](/molmil-images/mine/3llh) | Crystal structure of the first dsRBD of TAR RNA-binding protein 2 | Descriptor: | MALONATE ION, RISC-loading complex subunit TARBP2 | Authors: | Yamashita, S, Kawazoe, M, Takemoto, C, Sekine, S, Wakiyama, M, Yokoyama, S. | Deposit date: | 2010-01-29 | Release date: | 2010-12-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.14 Å) | Cite: | The structures of dsRBDs of human TRBP To be Published
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4WC6
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![BU of 4wc6 by Molmil](/molmil-images/mine/4wc6) | Structure of tRNA-processing enzyme complex 4 | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-mer) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.41 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WC3
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![BU of 4wc3 by Molmil](/molmil-images/mine/4wc3) | Structure of tRNA-processing enzyme complex 1 | Descriptor: | Poly A polymerase, RNA 76-mer | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WC0
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![BU of 4wc0 by Molmil](/molmil-images/mine/4wc0) | tRNA-processing enzyme with ATP | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WBZ
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![BU of 4wbz by Molmil](/molmil-images/mine/4wbz) | tRNA-processing enzyme (apo form 2) | Descriptor: | Poly A polymerase | Authors: | Yamashita, S, Tomtia, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WC2
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4WC1
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![BU of 4wc1 by Molmil](/molmil-images/mine/4wc1) | Structure of tRNA-processing enzyme with CTP | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4WC7
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![BU of 4wc7 by Molmil](/molmil-images/mine/4wc7) | Structure of tRNA-processing enzyme complex 5 | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-09-04 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.102 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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3QRA
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![BU of 3qra by Molmil](/molmil-images/mine/3qra) | The crystal structure of Ail, the attachment invasion locus protein of Yersinia pestis | Descriptor: | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Attachment invasion locus protein | Authors: | Yamashita, S, Lukacik, P, Noinaj, N, Buchanan, S.K. | Deposit date: | 2011-02-17 | Release date: | 2011-11-23 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.801 Å) | Cite: | Structural Insights into Ail-Mediated Adhesion in Yersinia pestis. Structure, 19, 2011
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3QRC
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![BU of 3qrc by Molmil](/molmil-images/mine/3qrc) | The crystal structure of Ail, the attachment invasion locus protein of Yersinia pestis, in complex with the heparin analogue sucrose octasulfate | Descriptor: | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, Attachment invasion locus protein | Authors: | Yamashita, S, Lukacik, P, Noinaj, N, Buchanan, S.K. | Deposit date: | 2011-02-17 | Release date: | 2011-11-23 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.852 Å) | Cite: | Structural Insights into Ail-Mediated Adhesion in Yersinia pestis. Structure, 19, 2011
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4EN6
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![BU of 4en6 by Molmil](/molmil-images/mine/4en6) | Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactose | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S. | Deposit date: | 2012-04-12 | Release date: | 2012-06-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.56 Å) | Cite: | Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides Febs Lett., 586, 2012
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4EN8
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![BU of 4en8 by Molmil](/molmil-images/mine/4en8) | Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactose | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S. | Deposit date: | 2012-04-12 | Release date: | 2012-06-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides Febs Lett., 586, 2012
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4EN9
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![BU of 4en9 by Molmil](/molmil-images/mine/4en9) | Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactosamine | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S. | Deposit date: | 2012-04-12 | Release date: | 2012-06-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.64 Å) | Cite: | Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides Febs Lett., 586, 2012
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4EN7
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![BU of 4en7 by Molmil](/molmil-images/mine/4en7) | Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactosamine | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S. | Deposit date: | 2012-04-12 | Release date: | 2012-06-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.68 Å) | Cite: | Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides Febs Lett., 586, 2012
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4X0A
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![BU of 4x0a by Molmil](/molmil-images/mine/4x0a) | Structure of tRNA-processing enzyme complex 6 | Descriptor: | Poly A polymerase, RNA (73-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-11-21 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.505 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4X0B
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![BU of 4x0b by Molmil](/molmil-images/mine/4x0b) | Structure of tRNA-processing enzyme complex 7 | Descriptor: | Poly A polymerase, RNA (77-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-11-21 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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5Y0S
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5Y0T
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![BU of 5y0t by Molmil](/molmil-images/mine/5y0t) | |