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PDB: 7 results

6LFF
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transcription factor SATB1 CUTr1 domain in complex with a phosphorothioate DNA
Descriptor: DNA (5'-D(*GP*(C7R)P*(PST)P*AP*AP*TP*AP*TP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*(AS)P*(PST)P*(AS)P*(PST)P*TP*AP*GP*C)-3'), DNA-binding protein SATB1
Authors:Akutsu, Y, Kubota, T, Yamasaki, T, Yamasaki, K.
Deposit date:2019-12-02
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Enhanced affinity of racemic phosphorothioate DNA with transcription factor SATB1 arising from diastereomer-specific hydrogen bonds and hydrophobic contacts.
Nucleic Acids Res., 48, 2020
1MP9
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TBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius
Descriptor: TATA-binding protein
Authors:Koike, H, Kawashima-Ohya, Y, Yamasaki, T, Clowney, L, Katsuya, Y, Suzuki, M.
Deposit date:2002-09-12
Release date:2003-11-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Origins of Protein Stability Revealed by Comparing Crystal Structures of TATA Binding Proteins.
Structure, 12, 2004
7VU9
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Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)[GlcNAc(beta1-4)]GlcNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, FORMIC ACID, Lectin (PhoSL)
Authors:Yamasaki, K, Yamasaki, T, Kubota, T.
Deposit date:2021-11-01
Release date:2022-10-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.154 Å)
Cite:Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection.
Febs J., 290, 2023
2MW8
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Solution structure of SATB1 homeodomain
Descriptor: DNA-binding protein SATB1
Authors:Yamasaki, K, Yamasaki, T.
Deposit date:2014-10-31
Release date:2015-11-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of SATB1 homeodomain
To be Published
6A86
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Pholiota squarrosa lectin
Descriptor: (3R)-butane-1,3-diol, lectin
Authors:Yamasaki, K, Yamasaki, T, Kubota, T.
Deposit date:2018-07-06
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for specific recognition of core fucosylation in N-glycans by Pholiota squarrosa lectin (PhoSL).
Glycobiology, 29, 2019
6A87
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Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)GlcNAc
Descriptor: METHANETHIOL, alpha-L-fucopyranose, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Yamasaki, K, Yamasaki, T, Kubota, T.
Deposit date:2018-07-06
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structural basis for specific recognition of core fucosylation in N-glycans by Pholiota squarrosa lectin (PhoSL).
Glycobiology, 29, 2019
1VCL
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Crystal Structure of Hemolytic Lectin CEL-III
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Uchida, T, Yamasaki, T, Eto, S, Sugawara, H, Kurisu, G, Nakagawa, A, Kusunoki, M, Hatakeyama, T.
Deposit date:2004-03-09
Release date:2004-09-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Hemolytic Lectin CEL-III Isolated from the Marine Invertebrate Cucumaria echinata: IMPLICATIONS OF DOMAIN STRUCTURE FOR ITS MEMBRANE PORE-FORMATION MECHANISM
J.Biol.Chem., 279, 2004

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PDB entries from 2024-07-17

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