3VPQ
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![BU of 3vpq by Molmil](/molmil-images/mine/3vpq) | Crystal structure of Bombyx mori sigma-class glutathione transferase in complex with glutathione | Descriptor: | DI(HYDROXYETHYL)ETHER, GLUTATHIONE, Glutathione S-transferase sigma, ... | Authors: | Yamamoto, K, Higashiura, A, Nakagawa, A, Suzuki, M. | Deposit date: | 2012-03-08 | Release date: | 2013-03-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.702 Å) | Cite: | Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity Biochim.Biophys.Acta, 1830, 2013
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3VUR
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1GCO
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![BU of 1gco by Molmil](/molmil-images/mine/1gco) | CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE COMPLEXED WITH NAD+ | Descriptor: | GLUCOSE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S. | Deposit date: | 2000-08-07 | Release date: | 2001-02-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of glucose dehydrogenase from Bacillus megaterium IWG3 at 1.7 A resolution. J.Biochem., 129, 2001
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1GEE
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![BU of 1gee by Molmil](/molmil-images/mine/1gee) | Crystal structure of glucose dehydrogenase mutant Q252L complexed with NAD+ | Descriptor: | GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S. | Deposit date: | 2000-11-07 | Release date: | 2003-08-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural analysis of stability-increasing mutants of glucose dehydrogenase To be Published
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1G6K
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![BU of 1g6k by Molmil](/molmil-images/mine/1g6k) | Crystal structure of glucose dehydrogenase mutant E96A complexed with NAD+ | Descriptor: | GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Yamamoto, K, Kurisu, G, Kusunoki, M, Tabata, S, Urabe, I, Osaki, S. | Deposit date: | 2000-11-06 | Release date: | 2003-08-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural analysis of stability-increasing mutants of glucose dehydrogenase To be Published
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5H5L
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![BU of 5h5l by Molmil](/molmil-images/mine/5h5l) | Structure of prostaglandin synthase D of Nilaparvata lugens | Descriptor: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTATHIONE, ... | Authors: | Yamamoto, K, Higashiura, A, Suzuki, S, Nakagawa, A. | Deposit date: | 2016-11-07 | Release date: | 2017-09-20 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.999 Å) | Cite: | Molecular structure of a prostaglandin D synthase requiring glutathione from the brown planthopper, Nilaparvata lugens Biochem. Biophys. Res. Commun., 492, 2017
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5X7Y
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![BU of 5x7y by Molmil](/molmil-images/mine/5x7y) | Crystal Structure of the Dog Lipocalin Allergen Can f 6 | Descriptor: | DI(HYDROXYETHYL)ETHER, Lipocalin-Can f 6 allergen | Authors: | Yamamoto, K, Otani, T, Sugiura, K, Nakatsuji, M, Nishimura, S, Inui, T. | Deposit date: | 2017-02-28 | Release date: | 2018-04-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4. Sci Rep, 9, 2019
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7XHX
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![BU of 7xhx by Molmil](/molmil-images/mine/7xhx) | Crystal structure of metallo-beta-lactamase IMP-6 | Descriptor: | Beta-lactamase, ZINC ION | Authors: | Yamamoto, K, Tanaka, H, Kurisu, G, Nakano, R, Yano, H, Sakai, H. | Deposit date: | 2022-04-11 | Release date: | 2023-02-15 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-beta-lactamases. J.Biochem., 173, 2022
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7XHW
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![BU of 7xhw by Molmil](/molmil-images/mine/7xhw) | Crystal structure of metallo-beta-lactamase IMP-1 | Descriptor: | Beta-lactamase, ZINC ION | Authors: | Yamamoto, K, Tanaka, H, Kurisu, G, Nakano, R, Yano, H, Sakai, H. | Deposit date: | 2022-04-11 | Release date: | 2023-02-15 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-beta-lactamases. J.Biochem., 173, 2022
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3VPT
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![BU of 3vpt by Molmil](/molmil-images/mine/3vpt) | Crystal structure of Bombyx mori sigma-class glutathione transferase in apo form | Descriptor: | DI(HYDROXYETHYL)ETHER, Glutathione S-transferase sigma, S-1,2-PROPANEDIOL, ... | Authors: | Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A. | Deposit date: | 2012-03-13 | Release date: | 2013-03-06 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity Biochim.Biophys.Acta, 1830, 2013
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3WCZ
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![BU of 3wcz by Molmil](/molmil-images/mine/3wcz) | Crystal structure of Bombyx mori aldo-keto reductase (AKR2E4) in complex with NADP | Descriptor: | 1,2-ETHANEDIOL, Aldo-keto reductase 2E, CITRIC ACID, ... | Authors: | Yamamoto, K, Wilson, D.K. | Deposit date: | 2013-06-05 | Release date: | 2014-01-01 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Identification, characterization, and crystal structure of an aldo-keto reductase (AKR2E4) from the silkworm Bombyx mori. Arch.Biochem.Biophys., 538, 2013
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3WD6
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![BU of 3wd6 by Molmil](/molmil-images/mine/3wd6) | Crystal structure of Bombyx mori omega-class glutathione transferase in complex with GSH | Descriptor: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTATHIONE, ... | Authors: | Yamamoto, K, Suzuki, M, Higashiura, A, Nakagawa, A. | Deposit date: | 2013-06-07 | Release date: | 2014-07-16 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Three-dimensional structure of a Bombyx mori Omega-class glutathione transferase. Biochem.Biophys.Res.Commun., 438, 2013
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3WYW
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![BU of 3wyw by Molmil](/molmil-images/mine/3wyw) | Structural characterization of catalytic site of a Nilaparvata lugens delta-class glutathione transferase | Descriptor: | 1,2-ETHANEDIOL, GLUTATHIONE, Glutathione S-transferase | Authors: | Yamamoto, K, Higashiura, A, Nakagawa, A. | Deposit date: | 2014-09-09 | Release date: | 2015-01-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase. Arch.Biochem.Biophys., 566C, 2014
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5ZFG
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![BU of 5zfg by Molmil](/molmil-images/mine/5zfg) | Crystal structure of a diazinon-metabolizing glutathione S-transferase in the silkworm, Bombyx mori | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Glutathione S-transferase | Authors: | Yamamoto, K, Higashiura, A, Nakagawa, A. | Deposit date: | 2018-03-06 | Release date: | 2018-09-12 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Characterisation of a diazinon-metabolising glutathione S-transferase in the silkworm Bombyx mori by X-ray crystallography and genome editing analysis. Sci Rep, 8, 2018
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3A4A
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![BU of 3a4a by Molmil](/molmil-images/mine/3a4a) | Crystal structure of isomaltase from Saccharomyces cerevisiae | Descriptor: | CALCIUM ION, Oligo-1,6-glucosidase, alpha-D-glucopyranose | Authors: | Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S. | Deposit date: | 2009-07-01 | Release date: | 2010-07-14 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose Febs J., 277, 2010
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3A47
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3AJ7
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![BU of 3aj7 by Molmil](/molmil-images/mine/3aj7) | Crystal Structure of isomaltase from Saccharomyces cerevisiae | Descriptor: | CALCIUM ION, Oligo-1,6-glucosidase | Authors: | Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S. | Deposit date: | 2010-05-26 | Release date: | 2010-08-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Crystal structures of isomaltase from Saccharomyces cerevisiae and in complex with its competitive inhibitor maltose Febs J., 277, 2010
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5AZ0
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![BU of 5az0 by Molmil](/molmil-images/mine/5az0) | Crystal structure of aldo-keto reductase (AKR2E5) of the silkworm, Bombyx mori | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... | Authors: | Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A. | Deposit date: | 2015-09-15 | Release date: | 2016-02-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori Biochem.Biophys.Res.Commun., 474, 2016
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5AZ1
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![BU of 5az1 by Molmil](/molmil-images/mine/5az1) | Crystal structure of aldo-keto reductase (AKR2E5) complexed with NADPH | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... | Authors: | Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A. | Deposit date: | 2015-09-15 | Release date: | 2016-02-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori Biochem.Biophys.Res.Commun., 474, 2016
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3AXH
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![BU of 3axh by Molmil](/molmil-images/mine/3axh) | Crystal structure of isomaltase in complex with isomaltose | Descriptor: | CALCIUM ION, Oligo-1,6-glucosidase IMA1, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose | Authors: | Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S. | Deposit date: | 2011-04-06 | Release date: | 2011-10-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae J.Biosci.Bioeng., 112, 2011
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3AXI
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![BU of 3axi by Molmil](/molmil-images/mine/3axi) | Crystal structure of isomaltase in complex with maltose | Descriptor: | CALCIUM ION, Oligo-1,6-glucosidase IMA1, alpha-D-glucopyranose | Authors: | Yamamoto, K, Miyake, H, Kusunoki, M, Osaki, S. | Deposit date: | 2011-04-06 | Release date: | 2011-10-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae J.Biosci.Bioeng., 112, 2011
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5WQX
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![BU of 5wqx by Molmil](/molmil-images/mine/5wqx) | Covalent bond formation of synthetic ligand with hPPARg-LBD | Descriptor: | 2-[E-(E-2-oxidanylidenehexadec-5-enylidene)amino]ethanoic acid, Peroxisome proliferator-activated receptor gamma | Authors: | Kojima, H, Itoh, T, Yamamoto, K. | Deposit date: | 2016-11-29 | Release date: | 2017-11-22 | Last modified: | 2017-12-13 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | On-site reaction for PPAR gamma modification using a specific bifunctional ligand Bioorg. Med. Chem., 25, 2017
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3JCJ
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![BU of 3jcj by Molmil](/molmil-images/mine/3jcj) | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | Descriptor: | 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... | Authors: | Sprink, T, Ramrath, D.J.F, Yamamoto, H, Yamamoto, K, Loerke, J, Ismer, J, Hildebrand, P.W, Scheerer, P, Buerger, J, Mielke, T, Spahn, C.M.T. | Deposit date: | 2015-12-18 | Release date: | 2016-03-09 | Last modified: | 2018-07-18 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association. Sci Adv, 2, 2016
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3JCN
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![BU of 3jcn by Molmil](/molmil-images/mine/3jcn) | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I | Descriptor: | 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... | Authors: | Sprink, T, Ramrath, D.J.F, Yamamoto, H, Yamamoto, K, Loerke, J, Ismer, J, Hildebrand, P.W, Scheerer, P, Buerger, J, Mielke, T, Spahn, C.M.T. | Deposit date: | 2016-01-04 | Release date: | 2016-03-09 | Last modified: | 2018-07-18 | Method: | ELECTRON MICROSCOPY (4.6 Å) | Cite: | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association. Sci Adv, 2, 2016
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4H04
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![BU of 4h04 by Molmil](/molmil-images/mine/4h04) | Lacto-N-biosidase from Bifidobacterium bifidum | Descriptor: | Lacto-N-biosidase, SULFATE ION, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Ito, T, Katayama, T, Wada, J, Suzuki, R, Ashida, H, Wakagi, T, Yamamoto, K, Fushinobu, S. | Deposit date: | 2012-09-07 | Release date: | 2013-03-20 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum J.Biol.Chem., 288, 2013
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