3WD6

Crystal structure of Bombyx mori omega-class glutathione transferase in complex with GSH

Summary for 3WD6

DescriptorOmega-class glutathione S-transferase, POTASSIUM ION, 1,2-ETHANEDIOL, ... (7 entities in total)
Functional Keywordselectron sharing network, transferase, glutathione binding
Biological sourceBombyx mori (silk moth,silkworm)
Total number of polymer chains4
Total molecular weight121601.84
Authors
Yamamoto, K.,Suzuki, M.,Higashiura, A.,Nakagawa, A. (deposition date: 2013-06-07, release date: 2014-07-16)
Primary citation
Yamamoto, K.,Suzuki, M.,Higashiura, A.,Nakagawa, A.
Three-dimensional structure of a Bombyx mori Omega-class glutathione transferase.
Biochem.Biophys.Res.Commun., 438:588-593, 2013
PubMed: 23939046 (PDB entries with the same primary citation)
DOI: 10.1016/j.bbrc.2013.08.011
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.5 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.246110.8%6.3%5.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3wd6
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Molmil generated image of 3wd6
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Molmil generated image of 3wd6
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 3wd6
no rotation
Molmil generated image of 3wd6
rotated about x axis by 90°
Molmil generated image of 3wd6
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3wd6.pdb3.gz [44.4 KB])
Coordinate files for Biological unit (3wd6.pdb1.gz [45.92 KB])
Coordinate files for Biological unit (3wd6.pdb2.gz [45.76 KB])
Coordinate files for Biological unit (3wd6.pdb6.gz [86.62 KB])
Coordinate files for Biological unit (3wd6.pdb5.gz [87 KB])
Coordinate files for Biological unit (3wd6.pdb4.gz [44.43 KB])