5X7Y

Crystal Structure of the Dog Lipocalin Allergen Can f 6

Summary for 5X7Y

DescriptorLipocalin-Can f 6 allergen, DI(HYDROXYETHYL)ETHER (3 entities in total)
Functional Keywordslipocalin allergen, allergen
Biological sourceCanis lupus familiaris (Dog)
Total number of polymer chains4
Total molecular weight81872.24
Authors
Yamamoto, K.,Otani, T.,Sugiura, K.,Nakatsuji, M.,Nishimura, S.,Inui, T. (deposition date: 2017-02-28, release date: 2018-04-04, Last modification date: 2019-03-06)
Primary citation
Yamamoto, K.,Ishibashi, O.,Sugiura, K.,Ubatani, M.,Sakaguchi, M.,Nakatsuji, M.,Shimamoto, S.,Noda, M.,Uchiyama, S.,Fukutomi, Y.,Nishimura, S.,Inui, T.
Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4.
Sci Rep, 9:1503-1503, 2019
PubMed: 30728436 (PDB entries with the same primary citation)
DOI: 10.1038/s41598-018-38134-w
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.35 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2691 0.5% 0.6% 3.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5x7y
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Molmil generated image of 5x7y
rotated about x axis by 90°
Molmil generated image of 5x7y
rotated about y axis by 90°