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PDB: 192 results

8GJ1
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E. coli clamp loader with open clamp on primed template DNA (form 2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GJ2
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BU of 8gj2 by Molmil
E. coli clamp loader with closed clamp on primed template DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8GJ0
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BU of 8gj0 by Molmil
E. coli clamp loader with open clamp on primed template DNA (form 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ...
Authors:Oakley, A.J, Xu, Z.-Q, Dixon, N.E.
Deposit date:2023-03-14
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural characterisation of the complete cycle of sliding clamp loading in E. coli
To Be Published
8HJE
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BU of 8hje by Molmil
Vismodegib binds to the catalytical domain of human Ubiquitin-Specific Protease 28
Descriptor: 2-chloranyl-~{N}-(4-chloranyl-3-pyridin-2-yl-phenyl)-4-methylsulfonyl-benzamide, Ubiquitin carboxyl-terminal hydrolase 28
Authors:Shi, L, Wang, H, Xu, Z, Xiong, B, Zhang, N.
Deposit date:2022-11-23
Release date:2023-05-03
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure-based discovery of potent USP28 inhibitors derived from Vismodegib.
Eur.J.Med.Chem., 254, 2023
8HN4
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Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope QYIKWPWYI
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell epitope QYIKWPWYI
Authors:Deng, S.S, Jin, T.C, Xu, Z.H.
Deposit date:2022-12-07
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.853 Å)
Cite:Immune escape at SARS- CoV-2 killer T cell epitope
To be published
1X7J
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BU of 1x7j by Molmil
CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH GENISTEIN
Descriptor: Estrogen receptor beta, GENISTEIN, STEROID RECEPTOR COACTIVATOR-1
Authors:Manas, E.S, Xu, Z.B, Unwalla, R.J, Somers, W.S.
Deposit date:2004-08-14
Release date:2005-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Understanding the Selectivity of Genistein for Human Estrogen Receptor-Beta Using X-Ray Crystallography and Computational Methods
Structure, 12, 2004
8IF1
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BU of 8if1 by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 Y453F epitope NYNYLFRLF
Descriptor: Beta-2-microglobulin, MHC class I antigen, Spike protein S1
Authors:Deng, S.S, Jin, T.C, Xu, Z.H, Wang, M.H.
Deposit date:2023-02-16
Release date:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Complex structure of HLA-A*24:02 and SARS-Cov-2 epitope NYNYLFRLF with Y453F mutation
To Be Published
1X78
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BU of 1x78 by Molmil
CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH WAY-244
Descriptor: Estrogen receptor beta, STEROID RECEPTOR COACTIVATOR-1, [5-HYDROXY-2-(4-HYDROXYPHENYL)-1-BENZOFURAN-7-YL]ACETONITRILE
Authors:Manas, E.S, Unwalla, R.J, Xu, Z.B, Malamas, M.S, Miller, C.P, Harris, H.A, Hsiao, C, Akopian, T, Hum, W.T, Malakian, K, Wolfrom, S, Bapat, A, Bhat, R.A, Stahl, M.L, Somers, W.S, Alvarez, J.C.
Deposit date:2004-08-13
Release date:2005-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Estrogen Receptor-Beta Selective Ligands
J.Am.Chem.Soc., 126, 2004
1X7B
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BU of 1x7b by Molmil
CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH ERB-041
Descriptor: 2-(3-FLUORO-4-HYDROXYPHENYL)-7-VINYL-1,3-BENZOXAZOL-5-OL, Estrogen receptor beta, STEROID RECEPTOR COACTIVATOR-1
Authors:Manas, E.S, Unwalla, R.J, Xu, Z.B, Malamas, M.S, Miller, C.P, Harris, H.A, Hsiao, C, Akopian, T, Hum, W.T, Malakian, K, Wolfrom, S, Bapat, A, Bhat, R.A, Stahl, M.L, Somers, W.S, Alvarez, J.C.
Deposit date:2004-08-13
Release date:2005-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Estrogen Receptor-Beta Selective Ligands
J.Am.Chem.Soc., 126, 2004
1X76
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BU of 1x76 by Molmil
CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH WAY-697
Descriptor: 5-HYDROXY-2-(4-HYDROXYPHENYL)-1-BENZOFURAN-7-CARBONITRILE, Estrogen receptor beta, STEROID RECEPTOR COACTIVATOR-1
Authors:Manas, E.S, Unwalla, R.J, Xu, Z.B, Malamas, M.S, Miller, C.P, Harris, H.A, Hsiao, C, Akopian, T, Hum, W.T, Malakian, K, Wolfrom, S, Bapat, A, Bhat, R.A, Stahl, M.L, Somers, W.S, Alvarez, J.C.
Deposit date:2004-08-13
Release date:2005-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Design of Estrogen Receptor-Beta Selective Ligands
J.Am.Chem.Soc., 126, 2004
1X7E
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BU of 1x7e by Molmil
CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR ALPHA COMPLEXED WITH WAY-244
Descriptor: Estrogen receptor 1 (alpha), [5-HYDROXY-2-(4-HYDROXYPHENYL)-1-BENZOFURAN-7-YL]ACETONITRILE, steroid receptor coactivator-3
Authors:Manas, E.S, Unwalla, R.J, Xu, Z.B, Malamas, M.S, Miller, C.P, Harris, H.A, Hsiao, C, Akopian, T, Hum, W.T, Malakian, K, Wolfrom, S, Bapat, A, Bhat, R.A, Stahl, M.L, Somers, W.S, Alvarez, J.C.
Deposit date:2004-08-13
Release date:2005-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Based Design of Estrogen Receptor-Beta Selective Ligands
J.Am.Chem.Soc., 126, 2004
7XAE
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BU of 7xae by Molmil
Crystal strucutre of PD-L1 and 3ONJA protein
Descriptor: 2IC6, Programmed cell death 1 ligand 1
Authors:Liu, K.F, Xu, Z.P, Han, P, Gao, G.F, Chai, Y, Tan, S.G.
Deposit date:2022-03-17
Release date:2023-09-20
Method:X-RAY DIFFRACTION (3.44 Å)
Cite:Crystal strucutre of PD-L1 and 2IC6 protein
To Be Published
1YTV
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BU of 1ytv by Molmil
Maltose-binding protein fusion to a C-terminal fragment of the V1a vasopressin receptor
Descriptor: Maltose-binding periplasmic protein, Vasopressin V1a receptor, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Adikesavan, N.V, Mahmood, S.S, Stanley, S, Xu, Z, Wu, N, Thibonnier, M, Shoham, M.
Deposit date:2005-02-11
Release date:2005-04-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A C-terminal segment of the V1R vasopressin receptor is unstructured in the crystal structure of its chimera with the maltose-binding protein.
Acta Crystallogr.,Sect.F, 61, 2005
1YY4
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BU of 1yy4 by Molmil
Crystal structure of estrogen receptor beta complexed with 1-chloro-6-(4-hydroxy-phenyl)-naphthalen-2-ol
Descriptor: 1-CHLORO-6-(4-HYDROXYPHENYL)-2-NAPHTHOL, Estrogen receptor beta, STEROID RECEPTOR COACTIVATOR-1
Authors:Mewshaw, R.E, Edsall Jr, R.J, Yang, C, Manas, E.S, Xu, Z.B, Henderson, R.A, Keith Jr, J.C, Harris, H.A.
Deposit date:2005-02-23
Release date:2006-02-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:ERbeta ligands. 3. Exploiting two binding orientations of the 2-phenylnaphthalene scaffold to achieve ERbeta selectivity
J.Med.Chem., 48, 2005
1YYE
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BU of 1yye by Molmil
Crystal structure of estrogen receptor beta complexed with way-202196
Descriptor: 3-(3-FLUORO-4-HYDROXYPHENYL)-7-HYDROXY-1-NAPHTHONITRILE, Estrogen receptor beta, STEROID RECEPTOR COACTIVATOR-1
Authors:Mewshaw, R.E, Edsall Jr, R.J, Yang, C, Manas, E.S, Xu, Z.B, Henderson, R.A, Keith Jr, J.C, Harris, H.A.
Deposit date:2005-02-24
Release date:2006-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:ERbeta ligands. 3. Exploiting two binding orientations of the 2-phenylnaphthalene scaffold to achieve ERbeta selectivity
J.Med.Chem., 48, 2005
1ZCP
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BU of 1zcp by Molmil
Crystal Structure of a catalytic site mutant E. coli TrxA (CACA)
Descriptor: Thioredoxin 1
Authors:Collet, J.-F, Peisach, D, Bardwell, J.C, Xu, Z.
Deposit date:2005-04-12
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of TrxA(CACA): Insights into the formation of a [2Fe-2S] iron-sulfur cluster in an Escherichia coli thioredoxin mutant
Protein Sci., 14, 2005
1ZAF
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BU of 1zaf by Molmil
Crystal structure of estrogen receptor beta complexed with 3-Bromo-6-hydroxy-2-(4-hydroxy-phenyl)-inden-1-one
Descriptor: 3-BROMO-6-HYDROXY-2-(4-HYDROXYPHENYL)-1H-INDEN-1-ONE, Estrogen receptor beta, Nuclear receptor coactivator 1
Authors:McDevitt, R.E, Malamas, M.S, Manas, E.S, Unwalla, R.J, Xu, Z.B, Miller, C.P, Harris, H.A.
Deposit date:2005-04-06
Release date:2006-04-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Estrogen receptor ligands: design and synthesis of new 2-arylindene-1-ones
Bioorg.Med.Chem.Lett., 15, 2005
4GVD
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BU of 4gvd by Molmil
Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with Syndecan1 Peptide
Descriptor: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID), CHLORIDE ION, SODIUM ION, ...
Authors:Liu, X, Shepherd, T.R, Murray, A.M, Xu, Z, Fuentes, E.J.
Deposit date:2012-08-30
Release date:2013-03-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics.
Structure, 21, 2013
7C7R
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BU of 7c7r by Molmil
Biofilm associated protein - B domain
Descriptor: Biofilm-associated surface protein, CALCIUM ION
Authors:Ma, J.F, Xu, Z.H, Zhang, Y.K, Cheng, X, Fan, S.L, Wang, J.W, Fang, X.Y.
Deposit date:2020-05-26
Release date:2021-05-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Structural mechanism for modulation of functional amyloid and biofilm formation by Staphylococcal Bap protein switch.
Embo J., 40, 2021
7C7U
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BU of 7c7u by Molmil
Biofilm associated protein - BSP domain
Descriptor: Biofilm-associated surface protein, CALCIUM ION
Authors:Ma, J.F, Xu, Z.H, Zhang, Y.K, Cheng, X, Fan, S.L, Wang, J.W, Fang, X.Y.
Deposit date:2020-05-26
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural mechanism for modulation of functional amyloid and biofilm formation by Staphylococcal Bap protein switch.
Embo J., 40, 2021
4GVC
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BU of 4gvc by Molmil
Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with phosphorylated Syndecan1 Peptide
Descriptor: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID), CHLORIDE ION, SODIUM ION, ...
Authors:Liu, X, Shepherd, T.R, Murray, A.M, Xu, Z, Fuentes, E.J.
Deposit date:2012-08-30
Release date:2013-03-13
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics.
Structure, 21, 2013
4NIQ
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BU of 4niq by Molmil
Crystal Structure of Vps4 MIT-Vfa1 MIM2
Descriptor: VPS4-associated protein 1, Vacuolar protein sorting-associated protein 4
Authors:Vild, C.J, Xu, Z.
Deposit date:2013-11-06
Release date:2014-03-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Vfa1 Binds to the N-terminal Microtubule-interacting and Trafficking (MIT) Domain of Vps4 and Stimulates Its ATPase Activity.
J.Biol.Chem., 289, 2014
3OLJ
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BU of 3olj by Molmil
Crystal structure of human ribonucleotide reductase subunit M2 (hRRM2)
Descriptor: Ribonucleoside-diphosphate reductase subunit M2, SODIUM ION
Authors:Chen, X.H, Xu, Z.J, Chen, B.E, Jiang, H.J, Yang, C.G, Zhu, W.L, Shao, J.M.
Deposit date:2010-08-26
Release date:2011-08-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:hRRM2
To be Published
3DYR
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BU of 3dyr by Molmil
Crystal structure of E. coli thioredoxin mutant I76T in its oxidized form
Descriptor: Thioredoxin-1
Authors:Ren, G, Bardwell, J.C.A, Xu, Z.
Deposit date:2008-07-28
Release date:2009-01-27
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Properties of the thioredoxin fold superfamily are modulated by a single amino acid residue.
J.Biol.Chem., 284, 2009
2LP0
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BU of 2lp0 by Molmil
The solution structure of homeodomain-protein complex
Descriptor: Geminin, Homeobox protein Hox-C9
Authors:Liu, C, Zhou, B, Xu, Z, Zhu, G.
Deposit date:2012-01-29
Release date:2012-06-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for homeodomain recognition by the cell-cycle regulator Geminin
Proc.Natl.Acad.Sci.USA, 2012

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PDB entries from 2024-05-29

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