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PDB: 310 results

6QYD
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BU of 6qyd by Molmil
Cryo-EM structure of the head in mature bacteriophage phi29
Descriptor: Capsid fiber protein, Major capsid protein
Authors:Xu, J.W, Wang, D.H, Gui, M, Xiang, Y.
Deposit date:2019-03-08
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
6QVK
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BU of 6qvk by Molmil
The cryo-EM structure of bacteriophage phi29 prohead
Descriptor: Capsid fiber protein, Major capsid protein
Authors:Xu, J, Gui, M, Xiang, Y.
Deposit date:2019-03-03
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
6QZ0
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BU of 6qz0 by Molmil
The cryo-EM structure of the head of the genome empited bacteriophage phi29
Descriptor: Capsid fiber protein, Major capsid protein
Authors:Xu, J, Wang, D, Gui, M, Xiang, Y.
Deposit date:2019-03-10
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
7DRX
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BU of 7drx by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with beryllium fluoride (E2P state)
Descriptor: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, Alkylphosphocholine resistance protein LEM3, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2020-12-30
Release date:2022-03-23
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DSH
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BU of 7dsh by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with AMPPCP (E1-ATP state)
Descriptor: Alkylphosphocholine resistance protein LEM3, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2020-12-31
Release date:2022-03-23
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
7DSI
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BU of 7dsi by Molmil
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in yeast lipids with AMPPCP ( resting state )
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alkylphosphocholine resistance protein LEM3, ...
Authors:Xu, J, He, Y, Wu, X, Li, L.
Deposit date:2020-12-31
Release date:2022-03-23
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Conformational changes of a phosphatidylcholine flippase in lipid membranes.
Cell Rep, 38, 2022
5GW8
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BU of 5gw8 by Molmil
Crystal structure of a putative DAG-like lipase (MgMDL2) from Malassezia globosa
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, ...
Authors:Xu, J, Xu, H, Liu, J.
Deposit date:2016-09-09
Release date:2017-09-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Malassezia globosa MgMDL2 lipase: Crystal structure and rational modification of substrate specificity.
Biochem. Biophys. Res. Commun., 488, 2017
4ZRD
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BU of 4zrd by Molmil
Crystal structure of SMG1 F278N mutant
Descriptor: GLYCEROL, LIP1, secretory lipase (Family 3), ...
Authors:Xu, J, Xu, H, Hou, S, Liu, J.
Deposit date:2015-05-12
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of product-bound SMG1 lipase: active site gating implications.
Febs J., 282, 2015
4ZRE
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BU of 4zre by Molmil
Crystal structure of SMG1 F278D mutant
Descriptor: CHLORIDE ION, LIP1, secretory lipase (Family 3), ...
Authors:Xu, J, Xu, H, Hou, S, Liu, J.
Deposit date:2015-05-12
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of product-bound SMG1 lipase: active site gating implications.
Febs J., 282, 2015
3WDJ
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BU of 3wdj by Molmil
Crystal structure of Pullulanase complexed with maltotetraose from Anoxybacillus sp. LM18-11
Descriptor: CALCIUM ION, Type I pullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Xu, J, Ren, F, Huang, C.H, Zheng, Y, Zhen, J, Ko, T.P, Chen, C.C, Chan, H.C, Guo, R.T, Ma, Y, Song, H.
Deposit date:2013-06-18
Release date:2014-04-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Cloning, Expression, Functional and Structural Studies of Pullulanase from Anoxybacillus sp. LM18-11
To be Published
3WDH
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BU of 3wdh by Molmil
Crystal structure of Pullulanase from Anoxybacillus sp. LM18-11
Descriptor: CALCIUM ION, Type I pullulanase
Authors:Xu, J, Ren, F, Huang, C.H, Zheng, Y, Zhen, J, Ko, T.P, Chen, C.C, Chan, H.C, Guo, R.T, Ma, Y, Song, H.
Deposit date:2013-06-18
Release date:2014-06-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Cloning, Expression, Functional and Structural Studies of Pullulanase from Anoxybacillus sp. LM18-11
To be Published
3WDI
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BU of 3wdi by Molmil
Crystal structure of Pullulanase complexed with maltotriose from Anoxybacillus sp. LM18-11
Descriptor: CALCIUM ION, Type I pullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Xu, J, Ren, F, Huang, C.H, Zheng, Y, Zhen, J, Ko, T.P, Chen, C.C, Chan, H.C, Guo, R.T, Ma, Y, Song, H.
Deposit date:2013-06-18
Release date:2014-06-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cloning, Expression, Functional and Structural Studies of Pullulanase from Anoxybacillus sp. LM18-11
To be Published
6PX9
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BU of 6px9 by Molmil
Crystal structure of procaspase-8 in complex with covalent small molecule inhibitor 63-R
Descriptor: Caspase-8, N-{(3R)-1-[4-(morpholin-4-yl)benzene-1-carbonyl]piperidin-3-yl}-N-phenylacetamide
Authors:Xu, J.H, Wolan, D.W.
Deposit date:2019-07-25
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Integrative X-ray Structure and Molecular Modeling for the Rationalization of Procaspase-8 Inhibitor Potency and Selectivity.
Acs Chem.Biol., 15, 2020
1G0J
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BU of 1g0j by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152S
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G0M
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BU of 1g0m by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152I
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G0Q
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BU of 1g0q by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT V149I
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G0G
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BU of 1g0g by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152A
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G0K
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BU of 1g0k by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152C
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G06
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BU of 1g06 by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT V149S
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-05
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G0L
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BU of 1g0l by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT T152V
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G07
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BU of 1g07 by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT V149C
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-05
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
1G0P
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BU of 1g0p by Molmil
CRYSTAL STRUCTURE OF T4 LYSOZYME MUTANT V149G
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Xu, J, Baase, W.A, Quillin, M.L, Matthews, B.W.
Deposit date:2000-10-06
Release date:2001-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
Protein Sci., 10, 2001
5H1B
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BU of 5h1b by Molmil
Human RAD51 presynaptic complex
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA repair protein RAD51 homolog 1, MAGNESIUM ION, ...
Authors:Xu, J, Zhao, L, Xu, Y, Zhao, W, Sung, P, Wang, H.W.
Deposit date:2016-10-08
Release date:2016-12-21
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Cryo-EM structures of human RAD51 recombinase filaments during catalysis of DNA-strand exchange
Nat. Struct. Mol. Biol., 24, 2017
5H1C
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BU of 5h1c by Molmil
Human RAD51 post-synaptic complexes
Descriptor: DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA repair protein RAD51 homolog 1, ...
Authors:Xu, J, Zhao, L, Xu, Y, Zhao, W, Sung, P, Wang, H.W.
Deposit date:2016-10-08
Release date:2016-12-21
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structures of human RAD51 recombinase filaments during catalysis of DNA-strand exchange
Nat. Struct. Mol. Biol., 24, 2017
6QZF
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BU of 6qzf by Molmil
The cryo-EM structure of the collar complex and tail axis in genome emptied bacteriophage phi29
Descriptor: Portal protein, Pre-neck appendage protein, Proximal tail tube connector protein
Authors:Xu, J, Wang, D, Gui, M, Xiang, Y.
Deposit date:2019-03-11
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019

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