6VHH
 
 | | Human Teneurin-2 and human Latrophilin-3 binary complex | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adhesion G protein-coupled receptor L3, ... | | Authors: | Xie, Y, Li, J, Arac, D, Zhao, M. | | Deposit date: | 2020-01-09 | | Release date: | 2020-06-03 | | Last modified: | 2024-10-23 | | Method: | ELECTRON MICROSCOPY (2.97 Å) | | Cite: | Alternative splicing controls teneurin-latrophilin interaction and synapse specificity by a shape-shifting mechanism.
Nat Commun, 11, 2020
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5KF4
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5K7X
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8SRR
 | | Cryo-EM structure of the CBC-ALYREF complex | | Descriptor: | 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Nuclear cap-binding protein subunit 1, Nuclear cap-binding protein subunit 2, ... | | Authors: | Xie, Y, Clarke, B.P, Ren, Y. | | Deposit date: | 2023-05-06 | | Release date: | 2024-09-25 | | Last modified: | 2024-10-02 | | Method: | ELECTRON MICROSCOPY (3.22 Å) | | Cite: | Cryo-EM structure of the CBC-ALYREF complex.
Elife, 12, 2024
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8SUY
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3O4Z
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1WS8
 | | Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini) | | Descriptor: | COPPER (II) ION, GLYCEROL, mavicyanin | | Authors: | Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kunishige, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y. | | Deposit date: | 2004-11-02 | | Release date: | 2004-11-23 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
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2YY0
 | | Crystal Structure of MS0802, c-Myc-1 binding protein domain from Homo sapiens | | Descriptor: | C-Myc-binding protein | | Authors: | Xie, Y, Wang, H, Ihsanawati, K.T, Kishishita, S, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-04-27 | | Release date: | 2008-04-29 | | Last modified: | 2024-06-26 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | crystal structure of c-Myc-1 binding protein domain from Homo sapiens
To be Published
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1WS7
 | | Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini) | | Descriptor: | COPPER (I) ION, Mavicyanin | | Authors: | Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kataoka, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y. | | Deposit date: | 2004-11-02 | | Release date: | 2004-11-23 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
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2YVQ
 | | Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens | | Descriptor: | Carbamoyl-phosphate synthase | | Authors: | Xie, Y, Ihsanawati, Kishishita, S, Murayama, K, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-04-13 | | Release date: | 2008-04-15 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.98 Å) | | Cite: | Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
To be Published
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2Z1B
 | | Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculs | | Descriptor: | Delta-aminolevulinic acid dehydratase | | Authors: | Xie, Y, Wang, H, Kawazoe, M, Kishishita, S, Murayama, K, Takemoto, C, Terada, T, Shirozu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-05-08 | | Release date: | 2008-05-13 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (3.3 Å) | | Cite: | Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculs
To be Published
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8ENK
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2DST
 | | Crystal Structure Analysis of TT1977 | | Descriptor: | Hypothetical protein TTHA1544 | | Authors: | Xie, Y, Kishishita, S, Murayama, K, Shirouzu, M, Chen, L, Liu, Z.J, Wang, B.C, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2006-07-06 | | Release date: | 2007-01-06 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 63, 2007
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2E7V
 | | Crystal structure of SEA domain of transmembrane protease from Mus musculus | | Descriptor: | Transmembrane protease | | Authors: | Xie, Y, Kishishita, S, Murayama, K, Hori-Takemoto, C, Shirozu, M, Yokoyama, S, Chen, L, Liu, Z.J, Wang, B.C, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-01-15 | | Release date: | 2007-07-17 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.92 Å) | | Cite: | Crystal structure of SEA domain of transmembrane protease from Mus musculus
To be Published
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2EAQ
 | | Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens | | Descriptor: | LIM domain only protein 7, NICKEL (II) ION | | Authors: | Xie, Y, Kishishita, S, Murayama, K, Takemoto, C, Shirozu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-01-31 | | Release date: | 2007-07-31 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.46 Å) | | Cite: | Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens
To be Published
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2D7U
 | | Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3 | | Descriptor: | Adenylosuccinate synthetase | | Authors: | Xie, Y, Kishisita, S, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2005-11-29 | | Release date: | 2006-05-29 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3
To be Published
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2E0T
 | | Crystal structure of catalytic domain of dual specificity phosphatase 26, MS0830 from Homo sapiens | | Descriptor: | Dual specificity phosphatase 26 | | Authors: | Xie, Y, Kishishita, S, Murayama, K, Hori-Takemoto, C, Chen, L, Liu, Z.J, Wang, B.C, Shirozu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2006-10-13 | | Release date: | 2007-10-16 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.67 Å) | | Cite: | High-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26.
Acta Crystallogr.,Sect.D, 69, 2013
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2KES
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6E5U
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8X8M
 | | Cryo-EM structure of a bacteriophage tail- spike protein against Klebsiella pneumoniae K64,ORF41(K64-ORF41) | | Descriptor: | Probable tail spike protein | | Authors: | Xie, Y, Huang, T, Zhang, Z, Tao, X. | | Deposit date: | 2023-11-27 | | Release date: | 2024-09-04 | | Method: | ELECTRON MICROSCOPY (2.37 Å) | | Cite: | Structural and functional basis of bacteriophage K64-ORF41 depolymerase for capsular polysaccharide degradation of Klebsiella pneumoniae K64.
Int.J.Biol.Macromol., 265, 2024
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8X8O
 | | Cryo-EM structure of a bacteriophage tail- spike protein against Klebsiella pneumoniae K64,ORF41(K64-ORF41) in 5 mM EDTA | | Descriptor: | Probable tail spike protein | | Authors: | Xie, Y, Huang, T, Zhang, Z, Tao, X. | | Deposit date: | 2023-11-27 | | Release date: | 2024-09-04 | | Method: | ELECTRON MICROSCOPY (2.5 Å) | | Cite: | Structural and functional basis of bacteriophage K64-ORF41 depolymerase for capsular polysaccharide degradation of Klebsiella pneumoniae K64.
Int.J.Biol.Macromol., 265, 2024
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7JV7
 | | Crystal Structure of the yeast RNA Pol II CTD kinase CTDK-1 complex | | Descriptor: | CITRATE ANION, CTD kinase subunit alpha, CTD kinase subunit beta, ... | | Authors: | Xie, Y, Ren, Y. | | Deposit date: | 2020-08-20 | | Release date: | 2021-01-27 | | Last modified: | 2024-03-06 | | Method: | X-RAY DIFFRACTION (1.850553 Å) | | Cite: | Structure and activation mechanism of the yeast RNA Pol II CTD kinase CTDK-1 complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
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7LUV
 | | Cryo-EM structure of the yeast THO-Sub2 complex | | Descriptor: | ATP-dependent RNA helicase SUB2, THO complex subunit 2, THO complex subunit HPR1, ... | | Authors: | Xie, Y, Ren, Y. | | Deposit date: | 2021-02-23 | | Release date: | 2021-04-14 | | Last modified: | 2024-03-06 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2.
Elife, 10, 2021
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8X80
 | | Structure of leptin-LepR trimer with a small gap | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Leptin, ... | | Authors: | Xie, Y.F, Gao, G.F. | | Deposit date: | 2023-11-27 | | Release date: | 2024-08-07 | | Last modified: | 2024-10-16 | | Method: | ELECTRON MICROSCOPY (3.88 Å) | | Cite: | Structural plasticity of human leptin binding to its receptor LepR
Hlife, 1, 2023
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8X81
 | | Structure of leptin-LepR trimer with a large gap | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Leptin, ... | | Authors: | Xie, Y.F, Gao, G.F. | | Deposit date: | 2023-11-27 | | Release date: | 2024-08-07 | | Last modified: | 2024-10-23 | | Method: | ELECTRON MICROSCOPY (3.77 Å) | | Cite: | Structural plasticity of human leptin binding to its receptor LepR
Hlife, 1, 2023
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