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PDB: 63 results

3CUL
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BU of 3cul by Molmil
Aminoacyl-tRNA synthetase ribozyme
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (92-MER), ...
Authors:Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R.
Deposit date:2008-04-16
Release date:2008-06-24
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme.
Nature, 454, 2008
3CUN
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BU of 3cun by Molmil
Aminoacyl-tRNA synthetase ribozyme
Descriptor: COBALT (II) ION, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R.
Deposit date:2008-04-16
Release date:2008-06-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme.
Nature, 454, 2008
8K37
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BU of 8k37 by Molmil
Structure of the bacteriophage lambda neck
Descriptor: Head-tail connector protein FII, Tail tube protein, Tail tube terminator protein
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
8K36
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BU of 8k36 by Molmil
Structure of the bacteriophage lambda tail tube
Descriptor: Tail tube protein
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
8K35
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BU of 8k35 by Molmil
Structure of the bacteriophage lambda tail tip complex
Descriptor: IRON/SULFUR CLUSTER, Tail tip assembly protein I, Tail tip protein L, ...
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
8K38
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BU of 8k38 by Molmil
The structure of bacteriophage lambda portal-adaptor
Descriptor: Head completion protein, Portal protein B
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
8K39
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BU of 8k39 by Molmil
Structure of the bacteriophage lambda portal vertex
Descriptor: Major capsid protein, Portal protein B
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
3EGZ
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BU of 3egz by Molmil
Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch
Descriptor: 7-CHLOROTETRACYCLINE, MAGNESIUM ION, Tetracycline aptamer and artificial riboswitch, ...
Authors:Xiao, H, Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:2008-09-11
Release date:2008-10-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch
Chem.Biol., 15, 2008
4ZJ1
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BU of 4zj1 by Molmil
Crystal Structure of p-acrylamido-phenylalanine modified TEM1 beta-lactamase from Escherichia coli : V216AcrF mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Beta-lactamase TEM, DI(HYDROXYETHYL)ETHER, ...
Authors:Xiao, H, Nasertorabi, F, Choi, S, Han, G.W, Reed, S.A, Stevens, R.C, Schultz, P.G.
Deposit date:2015-04-28
Release date:2015-05-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Exploring the potential impact of an expanded genetic code on protein function.
Proc.Natl.Acad.Sci.USA, 112, 2015
4ZJ2
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BU of 4zj2 by Molmil
Crystal Structure of p-acrylamido-phenylalanine modified TEM1 beta-lactamase from Escherichia coli :E166N mutant
Descriptor: Beta-lactamase TEM
Authors:Xiao, H, Nasertorabi, F, Choi, S, Han, G.W, Reed, S.A, Stevens, C.S, Schultz, P.G.
Deposit date:2015-04-28
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploring the potential impact of an expanded genetic code on protein function.
Proc.Natl.Acad.Sci.USA, 112, 2015
4ZJ3
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BU of 4zj3 by Molmil
Crystal structure of cephalexin bound acyl-enzyme intermediate of Val216AcrF mutant TEM1 beta-lactamase from Escherichia coli: E166N and V216AcrF mutant.
Descriptor: Beta-lactamase TEM
Authors:Xiao, H, Nasertorabi, F, Choi, S, Han, G.W, Reed, S.A, Stevens, R.C, Schultz, P.G.
Deposit date:2015-04-29
Release date:2015-05-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Exploring the potential impact of an expanded genetic code on protein function.
Proc.Natl.Acad.Sci.USA, 112, 2015
8I1V
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BU of 8i1v by Molmil
The asymmetric unit of P22 procapsid
Descriptor: Major capsid protein, Scaffolding protein
Authors:Xiao, H, Liu, H.R, Cheng, L.P.
Deposit date:2023-01-13
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Assembly and Capsid Expansion Mechanism of Bacteriophage P22 Revealed by High-Resolution Cryo-EM Structures.
Viruses, 15, 2023
8I1T
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BU of 8i1t by Molmil
The asymmetric unit of P22 empty capsid
Descriptor: Major capsid protein
Authors:Xiao, H, Liu, H.R, Cheng, L.P.
Deposit date:2023-01-13
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Assembly and Capsid Expansion Mechanism of Bacteriophage P22 Revealed by High-Resolution Cryo-EM Structures.
Viruses, 15, 2023
5Y2M
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BU of 5y2m by Molmil
Crystal structure of a group 2 HA binding antibody AF4H1K1 Fab in complex with the H4N6 duck isolate (H4-CZ/56) hemagglutinin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, a group 2 HA binding antibody AF4H1K1 Fab heavy chain, ...
Authors:Xiao, H, Qi, J, Gao, F.G.
Deposit date:2017-07-26
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:An H3-clade neutralizing antibody screened from an H7N9 patient that binds group 2 influenza A hemagglutinins
To Be Published
5Y2L
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BU of 5y2l by Molmil
Crystal structure of a group 2 HA binding antibody AF4H1K1 Fab in complex with the 1968 H3N2 pandemic (H3-AC/68) hemagglutinin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Xiao, H, Qi, J, Gao, F.G.
Deposit date:2017-07-26
Release date:2019-01-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:An H3-clade neutralizing antibody screened from an H7N9 patient that binds group 2 influenza A hemagglutinins
To Be Published
5Y2K
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BU of 5y2k by Molmil
A human antibody AF4H1L1
Descriptor: a group 2 HA binding antibody AF4H1K1 Fab heavy chain, a group 2 HA binding antibody AF4H1K1 Fab light chain
Authors:Xiao, H, Qi, J, Gao, F.G.
Deposit date:2017-07-26
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An H3-clade neutralizing antibody screened from an H7N9 patient that binds group 2 influenza A hemagglutinins
To Be Published
7E4K
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BU of 7e4k by Molmil
WNV envelope protein
Descriptor: Core protein
Authors:Xiao, H, Qi, J, Huang, C, Song, J, Cheng, H.
Deposit date:2021-02-13
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:WNV envelope protein
To Be Published
4MOD
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BU of 4mod by Molmil
Structure of the MERS-CoV fusion core
Descriptor: HR1 of S protein, LINKER, HR2 of S protein
Authors:Gao, J, Lu, G, Qi, J, Li, Y, Wu, Y, Deng, Y, Geng, H, Xiao, H, Tan, W, Yan, J, Gao, G.F.
Deposit date:2013-09-12
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structure of the fusion core and inhibition of fusion by a heptad repeat peptide derived from the S protein of Middle East respiratory syndrome coronavirus.
J.Virol., 87, 2013
3KCS
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BU of 3kcs by Molmil
Crystal structure of PAmCherry1 in the dark state
Descriptor: PAmCherry1 protein
Authors:Malashkevich, V.N, Subach, F.V, Zencheck, W.D, Xiao, H, Filonov, G.S, Almo, S.C, Verkhusha, V.V.
Deposit date:2009-10-21
Release date:2009-11-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states.
Proc.Natl.Acad.Sci.USA, 106, 2009
3KCT
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BU of 3kct by Molmil
CRYSTAL STRUCTURE OF PAmCherry1 in the photoactivated state
Descriptor: PAmCherry1 protein
Authors:Malashkevich, V.N, Subach, F.V, Zencheck, W.D, Xiao, H, Filonov, G.S, Almo, S.C, Verkhusha, V.V.
Deposit date:2009-10-21
Release date:2009-11-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states.
Proc.Natl.Acad.Sci.USA, 106, 2009
5JH7
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BU of 5jh7 by Molmil
Tubulin-Eribulin complex
Descriptor: (1S,3S,6S,9S,12S,14R,16R,18S,20R,21R,22S,26R,29S,31R,32S,33R,35R,36S)-20-[(2S)-3-amino-2-hydroxypropyl]-21-methoxy-14-methyl-8,15-dimethylidene-2,19,30,34,37,39,40,41-octaoxanonacyclo[24.9.2.1~3,32~.1~3,33~.1~6,9~.1~12,16~.0~18,22~.0~29,36~.0~31,35~]hentetracontan-24-one (non-preferred name), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Doodhi, H, Prota, A.E, Rodriguez-Garcia, R, Xiao, H, Custar, D.W, Bargsten, K, Katrukha, E.A, Hilbert, M, Hua, S, Jiang, K, Grigoriev, I, Yang, C.-P.H, Cox, D, Band Horwitz, S, Kapitein, L.C, Akhmanova, A, Steinmetz, M.O.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Termination of Protofilament Elongation by Eribulin Induces Lattice Defects that Promote Microtubule Catastrophes.
Curr.Biol., 26, 2016
7BOZ
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BU of 7boz by Molmil
N-teminal of mature bacteriophage T7 tail fiber protein gp17
Descriptor: N-teminal of mature bacteriophage T7 tail fiber protein gp17
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BOY
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BU of 7boy by Molmil
Mature bacteriorphage t7 tail nozzle protein gp12
Descriptor: Tail tubular protein gp12
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BP0
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BU of 7bp0 by Molmil
Packing Bacteriophage T7 portal protein GP8
Descriptor: Portal protein
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020
7BOX
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BU of 7box by Molmil
Mature bacteriorphage t7 tail adaptor protein gp11
Descriptor: Tail adaptor protein gp11
Authors:Chen, W.Y, Xiao, H.
Deposit date:2020-03-20
Release date:2021-03-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural changes of a bacteriophage upon DNA packaging and maturation.
Protein Cell, 11, 2020

 

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