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PDB: 281 results

3JA7
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BU of 3ja7 by Molmil
Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution
Descriptor: Portal protein gp20
Authors:Sun, L, Zhang, X, Gao, S, Rao, P.A, Padilla-Sanchez, V, Chen, Z, Sun, S, Xiang, Y, Subramaniam, S, Rao, V.B, Rossmann, M.G.
Deposit date:2015-04-21
Release date:2015-07-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution.
Nat Commun, 6, 2015
3J2W
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BU of 3j2w by Molmil
Electron cryo-microscopy of Chikungunya virus
Descriptor: Capsid protein, Glycoprotein E1, Glycoprotein E2
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2013-01-28
Release date:2013-04-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization.
Elife, 2, 2013
3MUU
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BU of 3muu by Molmil
Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH
Descriptor: Structural polyprotein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, L, Jose, J, Xiang, Y, Kuhn, R.J, Rossmann, M.G.
Deposit date:2010-05-03
Release date:2010-11-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structural changes of envelope proteins during alphavirus fusion.
Nature, 468, 2010
3MUW
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BU of 3muw by Molmil
Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus
Descriptor: Structural polyprotein
Authors:Li, L, Jose, J, Xiang, Y, Kuhn, R.J, Rossmann, M.G.
Deposit date:2010-05-03
Release date:2010-11-24
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structural changes of envelope proteins during alphavirus fusion.
Nature, 468, 2010
7XEY
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BU of 7xey by Molmil
EDS1-PAD4 complexed with pRib-ADP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5-O-phosphono-beta-D-ribofuranose, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Huang, S, Jia, A, Xiao, Y.
Deposit date:2022-03-31
Release date:2022-07-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity.
Science, 377, 2022
3J2Z
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BU of 3j2z by Molmil
Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m10
Descriptor: m10 heavy chain, m10 light chain
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2013-01-28
Release date:2013-04-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16.9 Å)
Cite:Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization.
Elife, 2, 2013
3SJM
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BU of 3sjm by Molmil
Crystal Structure Analysis of TRF2-Dbd-DNA complex
Descriptor: DNA (5'-D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3'), Telomeric repeat-binding factor 2
Authors:Nair, S.K, Sliverman, S.K, Chen, J.H, Xiao, Y.
Deposit date:2011-06-21
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal Structure Analysis of TRF2-Dbd-DNA complex
To be Published
3VCP
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BU of 3vcp by Molmil
The 2.2 Angstrom structure of Stc2 with proline bound in the active site
Descriptor: FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, PROLINE, ...
Authors:Daughtry, K.D, Xiao, Y, Stoner-Ma, D, Cho, E, Orville, A.M, Liu, P, Allen, K.N.
Deposit date:2012-01-04
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman, and UV-Visible Spectroscopic Analysis of a Rieske-Type Demethylase.
J.Am.Chem.Soc., 134, 2012
3VCA
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Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman and UV-visible Spectroscopic Analysis of a Rieske-type Demethylase
Descriptor: FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ...
Authors:Daughtry, K.D, Xiao, Y, Stoner-Ma, D, Cho, E, Orville, A.M, Liu, P, Allen, K.N.
Deposit date:2012-01-03
Release date:2012-02-08
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman, and UV-Visible Spectroscopic Analysis of a Rieske-Type Demethylase.
J.Am.Chem.Soc., 134, 2012
6A7F
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BU of 6a7f by Molmil
The cryo-EM structure of filamentous bacteriophage IKe major coat protein p8 shell assembly.
Descriptor: major coat protein p8
Authors:Xu, J.W, Dayan, N, Goldbourt, A, Xiang, Y.
Deposit date:2018-07-03
Release date:2019-02-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-electron microscopy structure of the filamentous bacteriophage IKe.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3TXQ
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BU of 3txq by Molmil
Crystal Structure of phage 44RR small terminase gp16
Descriptor: Terminase DNA packaging enzyme small subunit
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2011-09-23
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TXS
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BU of 3txs by Molmil
Crystal Structure of phage 44RR small terminase gp16
Descriptor: Terminase DNA packaging enzyme small subunit
Authors:Sun, S, Xiang, Y, Rossmann, M.G.
Deposit date:2011-09-23
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.
Proc.Natl.Acad.Sci.USA, 109, 2012
8HFF
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BU of 8hff by Molmil
Cryo-EM structure of human norepinephrine transporter NET in the presence of norepinephrine in an inward-open state at resolution of 2.9 angstrom.
Descriptor: L-NOREPINEPHRINE, Sodium-dependent noradrenaline transporter
Authors:Tan, J, Xiao, Y, Kong, F, Lei, J, Yuan, Y, Yan, C.
Deposit date:2022-11-10
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Molecular basis for the reuptake and inhibition of human norepinephrine transporter
To Be Published
8HFL
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BU of 8hfl by Molmil
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant bupropion in an inward-open state at resolution of 3.0 angstrom.
Descriptor: Bupropion, CHLORIDE ION, Sodium-dependent noradrenaline transporter
Authors:Tan, J, Xiao, Y, Kong, F, Lei, J, Yuan, Y, Yan, C.
Deposit date:2022-11-11
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular basis for the reuptake and inhibition of human norepinephrine transporter
To Be Published
8HFI
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BU of 8hfi by Molmil
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant desipramine in an inward-open state at resolution of 2.5 angstrom.
Descriptor: 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE, CHLORIDE ION, Sodium-dependent noradrenaline transporter
Authors:Tan, J, Xiao, Y, Kong, F, Lei, J, Yuan, Y, Yan, C.
Deposit date:2022-11-10
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Molecular basis for the reuptake and inhibition of human norepinephrine transporter
To Be Published
8HFG
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BU of 8hfg by Molmil
Cryo-EM structure of human norepinephrine transporter NET in the presence of dopamine in an inward-open state at resolution of 3.0 angstrom.
Descriptor: CHLORIDE ION, L-DOPAMINE, Sodium-dependent noradrenaline transporter
Authors:Tan, J, Xiao, Y, Kong, F, Lei, J, Yuan, Y, Yan, C.
Deposit date:2022-11-10
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular basis for the reuptake and inhibition of human norepinephrine transporter
To Be Published
8HFE
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BU of 8hfe by Molmil
Cryo-EM structure of human norepinephrine transporter NET in an inward-open state at resolution of 2.5 angstrom
Descriptor: CHLORIDE ION, Sodium-dependent noradrenaline transporter
Authors:Tan, J, Xiao, Y, Kong, F, Lei, J, Yuan, Y, Yan, C.
Deposit date:2022-11-10
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Molecular basis for the reuptake and inhibition of human norepinephrine transporter
To Be Published
8IVY
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BU of 8ivy by Molmil
Beta-Glucosidase BglA mutant E166Q in complex with glucose
Descriptor: Beta-glucosidase, GLYCEROL, beta-D-glucopyranose
Authors:Dong, S, Xiao, Y, Feng, Y.
Deposit date:2023-03-29
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Key roles of beta-glucosidase BglA for the catabolism of both laminaribiose and cellobiose in the lignocellulolytic bacterium Clostridium thermocellum.
Int.J.Biol.Macromol., 250, 2023
6KW1
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BU of 6kw1 by Molmil
The structure of the metallo-beta-lactamase VIM-2 in complex with a triazolylthioacetamide 1b
Descriptor: 2-[3-[2-(1H-benzimidazol-2-ylamino)-2-oxidanylidene-ethyl]sulfanyl-1H-1,2,4-triazol-5-yl]benzoic acid, ACETATE ION, Beta-lactamase class B VIM-2, ...
Authors:Yang, K.W, Xiang, Y.
Deposit date:2019-09-05
Release date:2020-09-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.775212 Å)
Cite:Kinetic, Thermodynamic, and Crystallographic Studies of 2-Triazolylthioacetamides as Verona Integron-Encoded Metallo-beta-Lactamase 2 (VIM-2) Inhibitor.
Biomolecules, 10, 2020
7EJV
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BU of 7ejv by Molmil
The co-crystal structure of DYRK2 with YK-2-69
Descriptor: Dual specificity tyrosine-phosphorylation-regulated kinase 2, [6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone
Authors:Li, Z, Xiao, Y, Yuan, K, Kuang, W, Xiuquan, Y, Yang, P.
Deposit date:2021-04-02
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Targeting dual-specificity tyrosine phosphorylation-regulated kinase 2 with a highly selective inhibitor for the treatment of prostate cancer.
Nat Commun, 13, 2022
7WIF
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BU of 7wif by Molmil
The THF-II riboswitch bound to H4B
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, RNA (50-MER)
Authors:Xu, L, Fang, X, Xiao, Y.
Deposit date:2022-01-03
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res., 51, 2023
7WIE
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BU of 7wie by Molmil
The THF-II riboswitch bound to 7DG
Descriptor: 7-DEAZAGUANINE, RNA (50-MER)
Authors:Xu, L, Fang, X, Xiao, Y.
Deposit date:2022-01-03
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res., 51, 2023
7WIA
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BU of 7wia by Molmil
The apo-form of THF-II C22G riboswitch
Descriptor: RNA (50-MER)
Authors:Xu, L, Fang, X, Xiao, Y.
Deposit date:2022-01-03
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res., 51, 2023
7WII
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BU of 7wii by Molmil
The THF-II riboswitch bound to NPR
Descriptor: 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE, RNA (50-MER)
Authors:Xu, L, Fang, X, Xiao, Y.
Deposit date:2022-01-03
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res., 51, 2023
7WI9
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BU of 7wi9 by Molmil
The THF-II riboswitch bound to THF and soaking with SeUrea
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, RNA (50-MER), selenourea
Authors:Xu, L, Fang, X, Xiao, Y.
Deposit date:2022-01-03
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res., 51, 2023

221716

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