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PDB: 409 results

3J42
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BU of 3j42 by Molmil
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Descriptor: Envelope protein E, Ig heavy chain V region MOPC 21, Igh protein chimera, ...
Authors:Wang, Z, Pennington, J.G, Jiang, W, Rossmann, M.G.
Deposit date:2013-06-13
Release date:2013-07-17
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (21 Å)
Cite:Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.
J.Virol., 87, 2013
3K8S
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BU of 3k8s by Molmil
Crystal Structure of PPARg in complex with T2384
Descriptor: 2-chloro-N-{3-chloro-4-[(5-chloro-1,3-benzothiazol-2-yl)sulfanyl]phenyl}-4-(trifluoromethyl)benzenesulfonamide, Peroxisome proliferator-activated receptor gamma
Authors:Wang, Z.
Deposit date:2009-10-14
Release date:2009-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:T2384, a novel antidiabetic agent with unique peroxisome proliferator-activated receptor gamma binding properties
J.Biol.Chem., 283, 2008
5EJC
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BU of 5ejc by Molmil
Crystal structural of the TSC1-TBC1D7 complex
Descriptor: Hamartin, TBC1 domain family member 7
Authors:Wang, Z, Qin, J, Gong, W, Xu, W.
Deposit date:2015-11-01
Release date:2016-03-02
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis of the Interaction between Tuberous Sclerosis Complex 1 (TSC1) and Tre2-Bub2-Cdc16 Domain Family Member 7 (TBC1D7).
J.Biol.Chem., 291, 2016
1A4L
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BU of 1a4l by Molmil
ADA STRUCTURE COMPLEXED WITH DEOXYCOFORMYCIN AT PH 7.0
Descriptor: 2'-DEOXYCOFORMYCIN, ADENOSINE DEAMINASE, ZINC ION
Authors:Wang, Z, Quiocho, F.A.
Deposit date:1998-01-31
Release date:1998-10-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Complexes of adenosine deaminase with two potent inhibitors: X-ray structures in four independent molecules at pH of maximum activity.
Biochemistry, 37, 1998
1A4M
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BU of 1a4m by Molmil
ADA STRUCTURE COMPLEXED WITH PURINE RIBOSIDE AT PH 7.0
Descriptor: 6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE, ADENOSINE DEAMINASE, ZINC ION
Authors:Wang, Z, Quiocho, F.A.
Deposit date:1998-01-31
Release date:1998-10-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Complexes of adenosine deaminase with two potent inhibitors: X-ray structures in four independent molecules at pH of maximum activity.
Biochemistry, 37, 1998
4F8Y
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BU of 4f8y by Molmil
Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MENADIONE, NADPH Quinone Oxidoreductase
Authors:Wang, Z, Li, L, Su, X.-D.
Deposit date:2012-05-18
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans
TO BE PUBLISHED
4N9Y
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BU of 4n9y by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E748Q
Descriptor: 2'-O-(5-O-phosphono-alpha-D-ribofuranosyl)adenosine 5'-(dihydrogen phosphate), Poly(ADP-ribose) glycohydrolase, SULFATE ION
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
4NA5
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BU of 4na5 by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E748N
Descriptor: Poly(ADP-ribose) glycohydrolase, SULFATE ION
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
4N9Z
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BU of 4n9z by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E749Q
Descriptor: 2'-O-(5-O-phosphono-alpha-D-ribofuranosyl)adenosine 5'-(dihydrogen phosphate), Poly(ADP-ribose) glycohydrolase, SULFATE ION
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
4NA0
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BU of 4na0 by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain with ADPRibose
Descriptor: IODIDE ION, Poly(ADP-ribose) glycohydrolase, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2014-09-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
4NA4
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BU of 4na4 by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain with ADP-HPD
Descriptor: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, IODIDE ION, Poly(ADP-ribose) glycohydrolase
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
4NA6
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BU of 4na6 by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E749N
Descriptor: Poly(ADP-ribose) glycohydrolase, SULFATE ION
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
3V3L
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BU of 3v3l by Molmil
Crystal structure of human RNF146 WWE domain in complex with iso-ADPRibose
Descriptor: 2'-O-(5-O-phosphono-alpha-D-ribofuranosyl)adenosine 5'-(dihydrogen phosphate), E3 ubiquitin-protein ligase RNF146
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2011-12-13
Release date:2012-02-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Recognition of the iso-ADP-ribose moiety in poly(ADP-ribose) by WWE domains suggests a general mechanism for poly(ADP-ribosyl)ation-dependent ubiquitination.
Genes Dev., 26, 2012
4H10
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BU of 4h10 by Molmil
Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic Helix-Loop-Helix domains with E-box DNA
Descriptor: Aryl hydrocarbon receptor nuclear translocator-like protein 1, Circadian locomoter output cycles protein kaput, E-box DNA antisense strand, ...
Authors:Wang, Z, Su, X.-D.
Deposit date:2012-09-10
Release date:2012-12-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA.
Cell Res., 23, 2013
4KVC
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BU of 4kvc by Molmil
2H2 Fab fragment of immature Dengue virus
Descriptor: Ig heavy chain V region MOPC 21, Igh protein, Ig kappa chain V-V region MOPC 21, ...
Authors:Wang, Z, Rossmann, M.G.
Deposit date:2013-05-22
Release date:2013-07-24
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.
J.Virol., 87, 2013
7KH1
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BU of 7kh1 by Molmil
Baseplate Complex for Myoviridae Phage XM1
Descriptor: baseplate organization protein, gp11, baseplate stabilizing protein, ...
Authors:Wang, Z, Klose, T, Jiang, W, Kuhn, R.J.
Deposit date:2020-10-19
Release date:2021-10-27
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of Vibrio phage XM1, a simple contractile DNA injection machine
Biorxiv, 2021
7KLN
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BU of 7kln by Molmil
Myoviridae Phage XM1 Neck Region (12-fold)
Descriptor: Head completion protein, gp1, Portal protein
Authors:Wang, Z, Klose, T, Jiang, W, Kuhn, R.J.
Deposit date:2020-10-30
Release date:2021-11-03
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of Vibrio phage XM1, a simple contractile DNA injection machine
Biorxiv, 2021
4L9A
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BU of 4l9a by Molmil
Crystal structure of Smu.1393c from cariogenic pathogen Streptococcus mutans
Descriptor: GLYCEROL, Putative uncharacterized protein Smu.1393c
Authors:Wang, Z, Li, L, Su, X.-D.
Deposit date:2013-06-18
Release date:2013-07-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional characterization of a novel alpha / beta hydrolase from cariogenic pathogen Streptococcus mutans.
Proteins, 82, 2014
6LK9
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BU of 6lk9 by Molmil
Coho salmon ferritin
Descriptor: Coho salmon ferritin, FE (III) ION
Authors:Wang, Z, Zang, J, Li, H, Tan, X, Du, M.
Deposit date:2019-12-18
Release date:2020-12-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Coho salmon ferritin
To Be Published
2LUQ
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BU of 2luq by Molmil
Solution structure of double-stranded RNA binding domain of S.cerevisiae RNase III (rnt1p)
Descriptor: Ribonuclease 3
Authors:Wang, Z, Feigon, J.
Deposit date:2012-06-19
Release date:2012-12-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Intrinsic Dynamics of an Extended Hydrophobic Core in the S. cerevisiae RNase III dsRBD Contributes to Recognition of Specific RNA Binding Sites.
J.Mol.Biol., 425, 2013
6N4N
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BU of 6n4n by Molmil
Crystal structure of the designed protein DNCR2/danoprevir/NS3a complex
Descriptor: (2R,6S,12Z,13aS,14aR,16aS)-6-[(tert-butoxycarbonyl)amino]-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxo-1,2,3,5,6,7,8 ,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 4-fluoro-2H-isoindole-2-carboxylate, NS3 protease, Rosetta-designed danoprevir/NS3a complex reader 2, ...
Authors:Wang, Z, Foight, G.W, Baker, D, Maly, D.J.
Deposit date:2018-11-19
Release date:2019-09-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Multi-input chemical control of protein dimerization for programming graded cellular responses.
Nat.Biotechnol., 37, 2019
5V5S
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BU of 5v5s by Molmil
multi-drug efflux; membrane transport; RND superfamily; Drug resistance
Descriptor: Multidrug efflux pump subunit AcrA, Multidrug efflux pump subunit AcrB, Outer membrane protein TolC
Authors:wang, Z, fan, G, Hryc, C.F, Blaza, J.N, Serysheva, I.I, Schmid, M.F, Chiu, W, Luisi, B.F, Du, D.
Deposit date:2017-03-15
Release date:2017-04-19
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:An allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump.
Elife, 6, 2017
5WK1
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BU of 5wk1 by Molmil
Structure of the major capsid protein and the capsid stabilizing protein of the marine siphovirus TW1
Descriptor: Capsid Stabilizing Protein, Major Capsid Protein
Authors:Wang, Z, Rossmann, M.G.
Deposit date:2017-07-24
Release date:2018-01-17
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the Marine Siphovirus TW1: Evolution of Capsid-Stabilizing Proteins and Tail Spikes.
Structure, 26, 2018
5VTA
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BU of 5vta by Molmil
Co-Crystal Structure of DPPIV with a Chemibody Inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{4-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]piperazin-1-yl}-N-(22-oxo-3,6,9,12,15,18-hexaoxa-21-azatricosan-1-yl)acetamide, ...
Authors:Wang, Z, Johnstone, S, Cheng, A.
Deposit date:2017-05-16
Release date:2018-05-09
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-guided Discovery of Dual-recognition Chemibodies.
Sci Rep, 8, 2018
4Q2J
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BU of 4q2j by Molmil
A novel structure-based mechanism for DNA-binding of SATB1
Descriptor: DNA-binding protein SATB1
Authors:Wang, Z, Long, J, Yang, X, Shen, Y.
Deposit date:2014-04-08
Release date:2015-03-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Crystal structure of the ubiquitin-like domain-CUT repeat-like tandem of special AT-rich sequence binding protein 1 (SATB1) reveals a coordinating DNA-binding mechanism.
J.Biol.Chem., 289, 2014

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