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PDB: 471 results

8X5K
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BU of 8x5k by Molmil
The Crystal Structure of SYK from Biortus.
Descriptor: 1,2-ETHANEDIOL, 2-{[(1R,2S)-2-aminocyclohexyl]amino}-4-{[3-(2H-1,2,3-triazol-2-yl)phenyl]amino}pyrimidine-5-carboxamide, Tyrosine-protein kinase SYK
Authors:Wang, F, Cheng, W, Yuan, Z, Qi, J, Shen, Z.
Deposit date:2023-11-17
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of SYK from Biortus.
To Be Published
7UEG
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BU of 7ueg by Molmil
Cryo-EM of bundling pili from Pyrobaculum calidifontis
Descriptor: Pilin
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2022-03-21
Release date:2022-06-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Archaeal bundling pili of Pyrobaculum calidifontis reveal similarities between archaeal and bacterial biofilms.
Proc.Natl.Acad.Sci.USA, 119, 2022
8WGQ
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BU of 8wgq by Molmil
The Crystal Structure of L-asparaginase from Biortus.
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, L-asparaginase
Authors:Wang, F, Cheng, W, Lv, Z, Ju, C, Wang, J.
Deposit date:2023-09-22
Release date:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Crystal Structure of L-asparaginase from Biortus.
To Be Published
7TFS
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BU of 7tfs by Molmil
Cryo-EM of the OmcE nanowires from Geobacter sulfurreducens
Descriptor: Cytochrome c, HEME C
Authors:Wang, F, Mustafa, K, Chan, C.H, Joshi, K, Hochbaum, A.I, Bond, D.R, Egelman, E.H.
Deposit date:2022-01-07
Release date:2022-05-04
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing.
Nat Microbiol, 7, 2022
8D9M
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BU of 8d9m by Molmil
Cryo-EM of the OmcZ nanowires from Geobacter sulfurreducens
Descriptor: Cytochrome c, HEME C
Authors:Wang, F, Chan, C.H, Mustafa, K, Hochbaum, A.I, Bond, D.R, Egelman, E.H.
Deposit date:2022-06-10
Release date:2022-09-14
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times.
Elife, 11, 2022
8D4X
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BU of 8d4x by Molmil
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form
Descriptor: E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:Wang, F, He, Q, Lin, G, Li, H.
Deposit date:2022-06-02
Release date:2023-04-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the human UBR5 E3 ubiquitin ligase.
Structure, 31, 2023
7TGG
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BU of 7tgg by Molmil
Cryo-EM structure of PilA-N and PilA-C from Geobacter sulfurreducens
Descriptor: Geopilin domain 1 protein, Geopilin domain 2 protein
Authors:Wang, F, Mustafa, K, Chan, C.H, Joshi, K, Bond, D.R, Hochbaum, A.I, Egelman, E.H.
Deposit date:2022-01-07
Release date:2022-02-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing.
Nat Microbiol, 7, 2022
7TXJ
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BU of 7txj by Molmil
Cryo-EM of AFV6
Descriptor: DNA (5'-D(*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*A)-3'), MCP1, MCP2
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2022-02-09
Release date:2022-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM of AFV6
To Be Published
7TXI
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BU of 7txi by Molmil
Cryo-EM of A. pernix flagellum
Descriptor: Probable flagellin 1
Authors:Wang, F, Cvirkaite-Krupovic, V, Baquero, D.P, Krupovic, M, Egelman, E.H.
Deposit date:2022-02-09
Release date:2022-06-01
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The evolution of archaeal flagellar filaments.
Proc.Natl.Acad.Sci.USA, 120, 2023
8FOF
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BU of 8fof by Molmil
Cryo-EM of BP-ffsy filaments
Descriptor: BP-ffsy
Authors:Wang, F, Guo, J, Egelman, E.H, Xu, B.
Deposit date:2022-12-30
Release date:2023-05-31
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cell spheroid creation by transcytotic intercellular gelation.
Nat Nanotechnol, 18, 2023
7RO4
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BU of 7ro4 by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 3
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROI
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BU of 7roi by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 12
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7RO2
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BU of 7ro2 by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 1
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROH
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BU of 7roh by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 11
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROG
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BU of 7rog by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 10
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROE
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BU of 7roe by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 9
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROC
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BU of 7roc by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 7
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7RO5
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BU of 7ro5 by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 4
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROB
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BU of 7rob by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7RO6
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BU of 7ro6 by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 5
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7ROD
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BU of 7rod by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 8
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
7RO3
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BU of 7ro3 by Molmil
Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 2
Descriptor: major capsid protein
Authors:Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H.
Deposit date:2021-07-30
Release date:2022-03-30
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.
Cell, 185, 2022
8E0Q
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BU of 8e0q by Molmil
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a C2 symmetric dimeric form
Descriptor: E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:Wang, F, He, Q, Lin, G, Li, H.
Deposit date:2022-08-09
Release date:2023-04-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structure of the human UBR5 E3 ubiquitin ligase.
Structure, 31, 2023
2Z2H
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BU of 2z2h by Molmil
NMR Structure of the IQ-modified Dodecamer CTCG[IQ]GCGCCATC
Descriptor: 3-METHYL-3H-IMIDAZO[4,5-F]QUINOLIN-2-AMINE, DNA (5'-D(*DCP*DTP*DCP*DGP*DGP*DCP*DGP*DCP*DCP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DGP*DGP*DCP*DGP*DCP*DCP*DGP*DAP*DG)-3')
Authors:Wang, F, Elmquist, C.E, Stover, J.S, Rizzo, C.J, Stone, M.P.
Deposit date:2007-05-22
Release date:2007-10-02
Last modified:2023-11-29
Method:SOLUTION NMR
Cite:DNA sequence modulates the conformation of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme
Biochemistry, 46, 2007
2Z2G
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BU of 2z2g by Molmil
NMR Structure of the IQ-modified Dodecamer CTC[IQ]GGCGCCATC
Descriptor: 3-METHYL-3H-IMIDAZO[4,5-F]QUINOLIN-2-AMINE, DNA (5'-D(*DCP*DTP*DCP*DGP*DGP*DCP*DGP*DCP*DCP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DTP*DGP*DGP*DCP*DGP*DCP*DCP*DGP*DAP*DG)-3')
Authors:Wang, F, Elmquist, C.E, Stover, J.S, Rizzo, C.J, Stone, M.P.
Deposit date:2007-05-22
Release date:2007-10-02
Last modified:2023-11-29
Method:SOLUTION NMR
Cite:DNA sequence modulates the conformation of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme
Biochemistry, 46, 2007

224004

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