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PDB: 140 results

1QYP
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THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES
Descriptor: RNA POLYMERASE II, ZINC ION
Authors:Wang, B, Jones, D.N.M, Kaine, B.P, Weiss, M.A.
Deposit date:1997-08-19
Release date:1997-12-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases.
Structure, 6, 1998
6TR2
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BU of 6tr2 by Molmil
Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
Authors:Wang, B, Frelih, T, Plavec, J, Sket, P.
Deposit date:2019-12-17
Release date:2020-01-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.
Nucleic Acids Res., 48, 2020
8JIH
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human telomere two-quartet G-quadruplex at pH 5.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Wang, B, Galer, P, Plavec, J.
Deposit date:2023-05-26
Release date:2024-04-03
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Unveiling the structural mechanism of a G-quadruplex pH-Driven switch.
Biochimie, 214, 2023
8JIC
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human telomere two-quartet G-quadruplex at pH 7.0
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
Authors:Wang, B, Galer, P, Plavec, J.
Deposit date:2023-05-26
Release date:2024-04-03
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Unveiling the structural mechanism of a G-quadruplex pH-Driven switch.
Biochimie, 214, 2023
9ASI
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BU of 9asi by Molmil
Cryo-EM structure of the active Lactococcus lactis Csm bound to target in pre-cleavage stage
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, CRISPR RNA, ...
Authors:Wang, B, Goswami, H.N, Li, H.
Deposit date:2024-02-25
Release date:2024-08-14
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Molecular basis for cA6 synthesis by a type III-A CRISPR-Cas enzyme and its conversion to cA4 production.
Nucleic Acids Res., 52, 2024
9ASH
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BU of 9ash by Molmil
Cryo-EM structure of the active Lactococcus lactis Csm bound to target in post-cleavage stage
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR RNA, CRISPR system Cms endoribonuclease Csm3, ...
Authors:Wang, B, Goswami, H.N, Li, H.
Deposit date:2024-02-25
Release date:2024-08-14
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Molecular basis for cA6 synthesis by a type III-A CRISPR-Cas enzyme and its conversion to cA4 production.
Nucleic Acids Res., 52, 2024
6LND
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BU of 6lnd by Molmil
Crystal structure of transposition protein TniQ
Descriptor: ZINC ION, transposition protein TniQ
Authors:Wang, B, Xu, W, Yang, H.
Deposit date:2019-12-28
Release date:2020-02-19
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis of a Tn7-like transposase recruitment and DNA loading to CRISPR-Cas surveillance complex.
Cell Res., 30, 2020
6LNB
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CryoEM structure of Cascade-TniQ-dsDNA complex
Descriptor: CRISPR RNA (60-MER), CRISPR-associated protein Cas6, CRISPR-associated protein Cas7, ...
Authors:Wang, B, Xu, W, Yang, H.
Deposit date:2019-12-28
Release date:2020-02-19
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Structural basis of a Tn7-like transposase recruitment and DNA loading to CRISPR-Cas surveillance complex.
Cell Res., 30, 2020
8C7B
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Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
8C7A
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BU of 8c7a by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
9GEF
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BU of 9gef by Molmil
Experimental localization of metal-binding sites reveals the role of metal ions in the delafloxacin-stabilized Streptococcus pneumoniae topoisomerase IV DNA cleavage complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Wang, B, Najmudin, S, Pan, X.-S, Mykhaylyk, V, Orr, C, Wagner, A, Govada, L, Chayen, N.E, Fisher, L.M, Sanderson, M.R.
Deposit date:2024-08-08
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Experimental localization of metal-binding sites reveals the role of metal ions in type II DNA topoisomerases.
Proc.Natl.Acad.Sci.USA, 121, 2024
1NJ3
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BU of 1nj3 by Molmil
Structure and Ubiquitin Interactions of the Conserved NZF Domain of Npl4
Descriptor: NPL4, ZINC ION
Authors:Wang, B, Alam, S.L, Meyer, H.H, Payne, M, Stemmler, T.L, Davis, D.R, Sundquist, W.I.
Deposit date:2002-12-30
Release date:2003-04-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4.
J.Biol.Chem., 278, 2003
5J62
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FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, PHOSPHATE ION, ...
Authors:Wang, B, Powell, S.M, Hessami, N, Najar, F.Z, Thomas, L.M, West, A.H, Karr, E.A, Richter-Addo, G.B.
Deposit date:2016-04-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.
Nitric Oxide, 60, 2016
5KD1
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BU of 5kd1 by Molmil
Sperm whale myoglobin H64A with nitrosoamphetamine
Descriptor: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wang, B, Guan, Y, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-06-07
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nitrosoamphetamine binding to myoglobin and hemoglobin: Crystal structure of the H64A myoglobin-nitrosoamphetamine adduct.
Nitric Oxide, 67, 2017
6P3W
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BU of 6p3w by Molmil
Crystal structure of the Cyclin A-CDK2-ORC1 complex
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2, ORC1 Peptide, ...
Authors:Wang, B, Song, J.
Deposit date:2019-05-24
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structural basis for the ORC1-Cyclin A association.
Protein Sci., 28, 2019
7BUJ
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BU of 7buj by Molmil
mcGAS bound with pppGpG
Descriptor: Cyclic GMP-AMP synthase, GUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wang, B, Su, X.D.
Deposit date:2020-04-07
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP.
Cell Rep, 32, 2020
7BUM
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BU of 7bum by Molmil
mcGAS bound with pGpA
Descriptor: ADENOSINE MONOPHOSPHATE, Cyclic GMP-AMP synthase, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Wang, B, Su, X.D.
Deposit date:2020-04-07
Release date:2020-09-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.047 Å)
Cite:Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP.
Cell Rep, 32, 2020
7BUQ
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BU of 7buq by Molmil
mcGAS bound with 23-cGAMP
Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cGAMP
Authors:Wang, B, Su, X.D.
Deposit date:2020-04-07
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP.
Cell Rep, 32, 2020
6LNC
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BU of 6lnc by Molmil
CryoEM structure of Cascade-TniQ complex
Descriptor: CRISPR RNA (60-MER), CRISPR-associated protein Cas6, CRISPR-associated protein Cas7, ...
Authors:Wang, B, Xu, W, Yang, H.
Deposit date:2019-12-28
Release date:2020-02-19
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural basis of a Tn7-like transposase recruitment and DNA loading to CRISPR-Cas surveillance complex.
Cell Res., 30, 2020
6UX2
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BU of 6ux2 by Molmil
Crystal structure of ZIKV RdRp in complex with STAT2
Descriptor: Nonstructural Protein 5, SULFATE ION, Signal transducer and activator of transcription 2, ...
Authors:Wang, B, Song, J.
Deposit date:2019-11-06
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for STAT2 suppression by flavivirus NS5.
Nat.Struct.Mol.Biol., 27, 2020
7T1Y
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BU of 7t1y by Molmil
Structure of the Fbw7-Skp1-MycCdegron complex
Descriptor: F-box/WD repeat-containing protein 7, Myc proto-oncogene protein C terminal degron, S-phase kinase-associated protein 1, ...
Authors:Wang, B, Rusnac, D.V, Clurman, B.E, Zheng, N.
Deposit date:2021-12-02
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor.
Sci Adv, 8, 2022
7T1Z
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BU of 7t1z by Molmil
Structure of the Fbw7-Skp1-MycNdegron complex
Descriptor: F-box/WD repeat-containing protein 7, Myc proto-oncogene N terminal degron, S-phase kinase-associated protein 1, ...
Authors:Wang, B, Rusnac, D.V, Clurman, B.E, Zheng, N.
Deposit date:2021-12-02
Release date:2022-02-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor.
Sci Adv, 8, 2022
6VWO
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BU of 6vwo by Molmil
Crystal structure of E. coli guanosine kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
6VWP
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Crystal structure of E. coli guanosine kinase in complex with ppGpp
Descriptor: GUANOSINE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
5B1Q
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Human herpesvirus 6B tegument protein U14
Descriptor: GLYCEROL, U14 protein
Authors:Wang, B, Nishimura, M, Tang, H, Kawabata, A, Mahmoud, N.F, Khanlari, Z, Hamada, D, Tsuruta, H, Mori, Y.
Deposit date:2015-12-11
Release date:2016-04-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Human Herpesvirus 6B Tegument Protein U14.
Plos Pathog., 12, 2016

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数据于2024-10-30公开中

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