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PDB: 1075 件

2CZ7
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Fe-type NHase photo-activated for 75min at 105K
分子名称: FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ...
著者Nojiri, M, Kawano, Y, Hashimoto, K, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-11
公開日2006-01-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Active Center Structures of Photo-reactive Nitrile Hydratase during its Photo-activation Process
To be Published
7W6M
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Cryo-EM map of PEDV (Pintung 52) S protein with all three protomers in the D0-down conformation determined in situ on intact viral particles.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Hsu, S.T.D, Draczkowski, P, Wang, Y.S.
登録日2021-12-02
公開日2022-08-03
最終更新日2022-09-14
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM.
Nat Commun, 13, 2022
7CI1
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Crystal structure of AcrVA2
分子名称: 1,2-ETHANEDIOL, AcrVA2, SPERMIDINE
著者Chen, P, Cheng, Z, Wang, Y.
登録日2020-07-07
公開日2020-10-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Study on Anti-CRISPR Protein AcrVA2
Prog.Biochem.Biophys., 2021
7W73
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Cryo-EM map of PEDV S protein with one protomer in the D0-up conformation while the other two in the D0-down conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Hsu, S.T.D, Draczkowski, P, Wang, Y.S.
登録日2021-12-03
公開日2022-08-03
最終更新日2022-12-21
実験手法ELECTRON MICROSCOPY (6.4 Å)
主引用文献In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM.
Nat Commun, 13, 2022
6K1N
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BU of 6k1n by Molmil
PLP-bound form of a putative cystathionine gamma-lyase
分子名称: Cystathionine gamma-lyase, PYRIDOXAL-5'-PHOSPHATE
著者Chen, S, Wang, Y.
登録日2019-05-10
公開日2020-05-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural characterization of cystathionine gamma-lyase smCSE enables aqueous metal quantum dot biosynthesis.
Int.J.Biol.Macromol., 174, 2021
7CI2
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Crystal structure of AcrVA2 in complex with partial MbCpf1
分子名称: AcrVA2, MbCpf1
著者Chen, P, Cheng, Z, Wang, Y.
登録日2020-07-07
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural Study on Anti-CRISPR Protein AcrVA2
Prog.Biochem.Biophys., 2021
6K6K
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BU of 6k6k by Molmil
The crystal structure of light-driven cyanobacterial chloride importer (N63A/P118A) Mastigocladopsis repens
分子名称: CHLORIDE ION, Cyanobacterial chloride importer, OLEIC ACID, ...
著者Yun, J.H, Park, J.H, Jin, Z, Ohki, M, Wang, Y, Lupala, C.S, Kim, M, Liu, H, Park, S.Y, Lee, W.
登録日2019-06-03
公開日2020-06-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.197 Å)
主引用文献The crystal structure of light-driven cyanobacterial chloride importer (N63A/P118A) Mastigocladopsis repens
To Be Published
2Z1Q
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Crystal structure of acyl CoA dehydrogenase
分子名称: Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
著者Hikima, T, Kawano, Y, Nodake, Y, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-11
公開日2008-05-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of acyl CoA dehydrogenase from Thermus thermophilus HB8
To be Published
7XVI
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pathogen effectors which are essential to cause plant disease by manipulating cellular processes in the host
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, PITG_15142
著者Wang, J, Wang, Y.
登録日2022-05-23
公開日2023-07-05
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Pathogen protein modularity enables elaborate mimicry of a host phosphatase.
Cell, 186, 2023
7XVK
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Modularity of Phytophthora effectors enables host mimicry of a principal phosphatase
分子名称: 1,2-ETHANEDIOL, RxLR effector protein PSR2, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
著者Wang, J, Wang, Y.
登録日2022-05-24
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Pathogen protein modularity enables elaborate mimicry of a host phosphatase.
Cell, 186, 2023
1Y43
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crystal structure of aspergilloglutamic peptidase from Aspergillus niger
分子名称: Aspergillopepsin II heavy chain, Aspergillopepsin II light chain, SULFATE ION
著者Sasaki, H, Nakagawa, A, Iwata, S, Muramatsu, T, Suganuma, M, Sawano, Y, Kojima, M, Kubota, K, Takahashi, K.
登録日2004-11-30
公開日2005-12-13
最終更新日2013-02-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger
Proc.Jpn.Acad.,Ser.B, 80, 2004
2ZZD
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Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme
分子名称: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
著者Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M.
登録日2009-02-09
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
5X3P
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BU of 5x3p by Molmil
Crystal structure of the UBX domain of human UBXD7
分子名称: UBX domain-containing protein 7
著者Jiang, T, Li, Z, Wang, Y, Xu, M.
登録日2017-02-06
公開日2017-03-22
最終更新日2017-04-05
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Crystal structures of the UBX domain of human UBXD7 and its complex with p97 ATPase
Biochem. Biophys. Res. Commun., 486, 2017
5X4L
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Crystal structure of the UBX domain of human UBXD7 in complex with p97 N domain
分子名称: Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 7
著者Jiang, T, Li, Z, Wang, Y, Xu, M.
登録日2017-02-13
公開日2017-03-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Crystal structures of the UBX domain of human UBXD7 and its complex with p97 ATPase
Biochem. Biophys. Res. Commun., 486, 2017
7VND
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BU of 7vnd by Molmil
Structure of the SARS-CoV-2 spike glycoprotein in complex with a human single domain antibody n3113 (UUD-state, state 2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Yang, Z, Wang, Y, Kong, Y, Jin, Y, Wu, Y, Ying, T.
登録日2021-10-10
公開日2021-11-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献A non-ACE2 competing human single-domain antibody confers broad neutralization against SARS-CoV-2 and circulating variants.
Signal Transduct Target Ther, 6, 2021
7VNE
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Structure of the SARS-CoV-2 spike glycoprotein in complex with a human single domain antibody n3113.1 (UUU-state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Yang, Z, Wang, Y, Kong, Y, Jin, Y, Wu, Y, Ying, T.
登録日2021-10-10
公開日2021-11-24
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献A non-ACE2 competing human single-domain antibody confers broad neutralization against SARS-CoV-2 and circulating variants.
Signal Transduct Target Ther, 6, 2021
7VNB
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Crystal structure of the SARS-CoV-2 RBD in complex with a human single domain antibody n3113
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, n3113
著者Yang, Z, Wang, Y, Kong, Y, Jin, Y, Wu, Y, Ying, T.
登録日2021-10-10
公開日2021-11-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献A non-ACE2 competing human single-domain antibody confers broad neutralization against SARS-CoV-2 and circulating variants.
Signal Transduct Target Ther, 6, 2021
7VNC
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BU of 7vnc by Molmil
Structure of the SARS-CoV-2 spike glycoprotein in complex with a human single domain antibody n3113 (UDD-state, state 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Yang, Z, Wang, Y, Kong, Y, Jin, Y, Wu, Y, Ying, T.
登録日2021-10-10
公開日2021-11-24
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献A non-ACE2 competing human single-domain antibody confers broad neutralization against SARS-CoV-2 and circulating variants.
Signal Transduct Target Ther, 6, 2021
7VP8
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Crystal structure of ferritin from Ureaplasma urealyticum
分子名称: CHLORIDE ION, FE (III) ION, Ferritin-like diiron domain-containing protein
著者Wang, W, Liu, X, Wang, Y, Fu, D, Wang, H.
登録日2021-10-15
公開日2022-08-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Distinct structural characteristics define a new subfamily of Mycoplasma ferritin
Chin.Chem.Lett., 33, 2022
2MVW
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Solution structure of the TRIM19 B-box1 (B1) of human promyelocytic leukemia (PML)
分子名称: Protein PML, ZINC ION
著者Huang, S, Naik, M.T, Fan, P, Wang, Y, Chang, C, Huang, T.
登録日2014-10-17
公開日2014-11-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The B-box 1 dimer of human promyelocytic leukemia protein.
J.Biomol.Nmr, 60, 2014
7F0X
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BU of 7f0x by Molmil
A SARS-CoV-2 neutralizing antibody
分子名称: Antibody, Spike protein S1
著者Zhang, G, Li, X, Guo, Y, Wang, Y, Yuan, S.
登録日2021-06-07
公開日2022-06-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A SARS-CoV-2 neutralizing antibody
To Be Published
7F12
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A SARS-CoV-2 neutralizing antibody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody, Spike protein S1
著者Zhang, G, Li, X, Guo, Y, Wang, Y, Yuan, S.
登録日2021-06-07
公開日2022-06-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献A SARS-CoV-2 neutralizing antibody
To Be Published
7F15
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A SARS-CoV-2 neutralizing antibody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody, Spike protein S1
著者Zhang, G, Li, X, Guo, Y, Wang, Y, Yuan, S.
登録日2021-06-07
公開日2022-06-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A SARS-CoV-2 neutralizing antibody
To Be Published
7V8G
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Crystal structure of HOIP RING1 domain bound to IpaH1.4 LRR domain
分子名称: E3 ubiquitin-protein ligase RNF31, RING-type E3 ubiquitin transferase, ZINC ION
著者Liu, J, Wang, Y, Pan, L.
登録日2021-08-23
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Mechanistic insights into the subversion of the linear ubiquitin chain assembly complex by the E3 ligase IpaH1.4 of Shigella flexneri.
Proc.Natl.Acad.Sci.USA, 119, 2022
7V8E
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Crystal structure of IpaH1.4 LRR domain bound to HOIL-1L UBL domain.
分子名称: RING-type E3 ubiquitin transferase, RanBP-type and C3HC4-type zinc finger-containing protein 1
著者Liu, J, Wang, Y, Pan, L.
登録日2021-08-22
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanistic insights into the subversion of the linear ubiquitin chain assembly complex by the E3 ligase IpaH1.4 of Shigella flexneri.
Proc.Natl.Acad.Sci.USA, 119, 2022

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件を2024-07-31に公開中

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