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PDB: 1554 件

7XXM
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Orf1-glycine-4-aminobutylthricin complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
著者Wang, Y.L, Li, T.L.
登録日2022-05-30
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.119 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XX0
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C281S glycylthricin complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
著者Wang, Y.L, Li, T.L.
登録日2022-05-27
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.199 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XYL
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E426Q-glycine-glycylthricin complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
著者Wang, Y.L, Li, T.L.
登録日2022-06-01
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXD
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Orf1-sarcosine complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, N-formimidoyl fortimicin A synthase, SARCOSINE
著者Wang, Y.L, Li, T.L.
登録日2022-05-29
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.982 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXR
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Orf1 R342A-glycylthricin complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, N-formimidoyl fortimicin A synthase, [(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate
著者Wang, Y.L, Li, T.L.
登録日2022-05-30
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7Y0X
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Orf1-glycine complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
著者Wang, Y.L, Li, T.L.
登録日2022-06-06
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXP
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F316A-glycine-streptothricin F complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
著者Wang, Y.L, Li, T.L.
登録日2022-05-30
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.052 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
1QTO
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1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS
分子名称: BLEOMYCIN-BINDING PROTEIN
著者Kawano, Y, Kumagai, T, Muta, K, Matoba, Y, Davies, J, Sugiyama, M.
登録日1999-06-28
公開日2000-06-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The 1.5 A crystal structure of a bleomycin resistance determinant from bleomycin-producing Streptomyces verticillus.
J.Mol.Biol., 295, 2000
7WU1
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Crystal structure of phospholipase D from Moritella sp. JT01
分子名称: 1,2-ETHANEDIOL, Phospholipase D, SODIUM ION
著者Wang, Y.H, Mao, X.J, Wang, J, Wang, F.H.
登録日2022-02-05
公開日2023-02-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of phospholipase D from Moritella sp. JT01
To Be Published
7YPU
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OrfE-CoA-glycylthricin complex
分子名称: Acetyltransferase, COENZYME A, [(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate
著者Wang, Y.L, Li, T.L.
登録日2022-08-04
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.357 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7YPV
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Crystal structure of OrE-ST-F
分子名称: Acetyltransferase, Streptothricin F
著者Wang, Y.L, Li, T.L.
登録日2022-08-04
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.415 Å)
主引用文献N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
3SPK
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Tipranavir in Complex with a Human Immunodeficiency Virus Type 1 Protease Variant
分子名称: HIV-1 protease, N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
著者Wang, Y, Liu, Z, Brunzelle, J.S, Kovari, I.A, Kovari, L.C.
登録日2011-07-01
公開日2011-10-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献The higher barrier of darunavir and tipranavir resistance for HIV-1 protease.
Biochem.Biophys.Res.Commun., 412, 2011
3V74
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crystal structure of FBF-2 in complex with gld-1 FBEa13 RNA
分子名称: Fem-3 mRNA-binding factor 2, RNA (5'-R(*UP*CP*AP*UP*GP*UP*GP*CP*CP*AP*UP*AP*C)-3')
著者Wang, Y, Qiu, C, Kershner, A, Holley, C.P, Wilinski, D, Keles, S, Kimble, J, Wickens, M, Hall, T.M.T.
登録日2011-12-20
公開日2012-01-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Divergence of PUF protein specificity through variations in an RNA-binding pocket
J.Biol.Chem., 2012
7W5E
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BU of 7w5e by Molmil
Oxidase ChaP D49L mutant
分子名称: ChaP, FE (III) ION
著者Wang, Y, Zheng, W, Meng, Z, Jin, Y, Zhu, J, Tan, R.
登録日2021-11-30
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Alteration of the Catalytic Reaction Trajectory of a Vicinal Oxygen Chelate Enzyme by Directed Evolution.
Angew.Chem.Int.Ed.Engl., 61, 2022
7X7E
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BU of 7x7e by Molmil
SARS-CoV-2 RBD and Nb22
分子名称: Nb22, Spike protein S1, TETRAETHYLENE GLYCOL
著者Wang, Y, Ye, S.
登録日2022-03-09
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Short-Term Instantaneous Prophylaxis and Efficient Treatment Against SARS-CoV-2 in hACE2 Mice Conferred by an Intranasal Nanobody (Nb22).
Front Immunol, 13, 2022
7X7D
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BU of 7x7d by Molmil
SARS-CoV-2 Delta RBD and Nb22
分子名称: Nb22, Spike protein S1
著者Wang, Y, Ye, S.
登録日2022-03-09
公開日2022-04-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Short-Term Instantaneous Prophylaxis and Efficient Treatment Against SARS-CoV-2 in hACE2 Mice Conferred by an Intranasal Nanobody (Nb22).
Front Immunol, 13, 2022
7XJW
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BU of 7xjw by Molmil
Crystal structure of canine coronavirus main protease in complex with GC376
分子名称: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, ORF1a polyprotein
著者Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chiu, Y.F, Chen, Y.
登録日2022-04-18
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A Structural Comparison of SARS-CoV-2 Main Protease and Animal Coronaviral Main Protease Reveals Species-Specific Ligand Binding and Dimerization Mechanism.
Int J Mol Sci, 23, 2022
2YW3
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BU of 2yw3 by Molmil
Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1
分子名称: 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase, PHOSPHATE ION
著者Kawano, Y, Hashimoto, K, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-19
公開日2007-10-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1
To be published
7EF1
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crystal structure of maize SHH2 SAWADEE domain in complex with and H3K9me1 peptide
分子名称: HB transcription factor, Histone H3.2, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
7EEZ
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crystal structure of maize SHH2 SAWADEE domain
分子名称: HB transcription factor, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
7EF2
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Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9me3 peptide
分子名称: HB transcription factor, Histone H3.2, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
7EF3
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crystal structure of maize SHH2 SAWADEE domain in complex with H3K9me2 peptide
分子名称: HB transcription factor, Histone H3.2, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
7EF0
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Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9M peptide
分子名称: HB transcription factor, Histone H3.2, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
7DAD
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EPD in complex with tubulin
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
著者Wang, Y, Wu, C.
登録日2020-10-16
公開日2021-03-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献High-resolution X-ray structure of three microtubule-stabilizing agents in complex with tubulin provide a rationale for drug design.
Biochem.Biophys.Res.Commun., 534, 2021
7WOF
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SARS-CoV-2 3CLpro
分子名称: (2S,3S)-3-methyl-N-[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(E)-3-phenylprop-2-enoyl]amino]pentanamide, 3C-like proteinase
著者Wang, Y, Ye, S.
登録日2022-01-21
公開日2022-04-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Discovery of SARS-CoV-2 3CL Pro Peptidomimetic Inhibitors through the Catalytic Dyad Histidine-Specific Protein-Ligand Interactions.
Int J Mol Sci, 23, 2022

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件を2024-07-24に公開中

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