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PDB: 538 results

3LF5
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BU of 3lf5 by Molmil
Structure of Human NADH cytochrome b5 oxidoreductase (Ncb5or) b5 Domain to 1.25A Resolution
Descriptor: Cytochrome b5 reductase 4, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Deng, B, Parthasarathy, S, Wang, W, Gibney, B.R, Battaile, K.P, Lovell, S, Benson, D.R, Zhu, H.
Deposit date:2010-01-15
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Study of the individual cytochrome b5 and cytochrome b5 reductase domains of Ncb5or reveals a unique heme pocket and a possible role of the CS domain.
J.Biol.Chem., 285, 2010
4N0B
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Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of GabT
Descriptor: ACETYL GROUP, CALCIUM ION, HTH-type transcriptional regulatory protein GabR, ...
Authors:Edayathumangalam, R, Wu, R, Garcia, R, Wang, Y, Wang, W, Kreinbring, C.A, Bach, A, Liao, J, Stone, T, Terwilliger, T, Hoang, Q.Q, Belitsky, B.R, Petsko, G.A, Ringe, D, Liu, D.
Deposit date:2013-10-01
Release date:2013-10-30
Last modified:2014-04-02
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT.
Proc.Natl.Acad.Sci.USA, 110, 2013
3L82
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X-ray Crystal structure of TRF1 and Fbx4 complex
Descriptor: F-box only protein 4, Telomeric repeat-binding factor 1
Authors:Zeng, Z.X, Wang, W, Yang, Y.T, Chen, Y, Yang, X.M, Diehl, J.A, Liu, X.D, Lei, M.
Deposit date:2009-12-29
Release date:2010-03-09
Last modified:2013-09-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis of Selective Ubiquitination of TRF1 by SCF(Fbx4)
Dev.Cell, 18, 2010
7E58
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BU of 7e58 by Molmil
interferon-inducible anti-viral protein 2
Descriptor: Guanylate-binding protein 2
Authors:Cui, W, Wang, W, Chen, C, Slater, B, Xiong, Y, Ji, X.Y, Yang, H.T.
Deposit date:2021-02-18
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for GTP-induced dimerization and antiviral function of guanylate-binding proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
7E5A
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BU of 7e5a by Molmil
interferon-inducible anti-viral protein R356A
Descriptor: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, Guanylate-binding protein 5, ...
Authors:Cui, W, Wang, W, Chen, C, Slater, B, Xiong, Y, Ji, X.Y, Yang, H.T.
Deposit date:2021-02-18
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for GTP-induced dimerization and antiviral function of guanylate-binding proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
7E59
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BU of 7e59 by Molmil
interferon-inducible anti-viral protein truncated
Descriptor: Guanylate-binding protein 5
Authors:Cui, W, Wang, W, Chen, C, Slater, B, Xiong, Y, Ji, X.Y, Yang, H.T.
Deposit date:2021-02-18
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for GTP-induced dimerization and antiviral function of guanylate-binding proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
4N4R
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BU of 4n4r by Molmil
Structure basis of lipopolysaccharide biogenesis
Descriptor: CACODYLATE ION, LPS-assembly lipoprotein LptE, LPS-assembly protein LptD, ...
Authors:Dong, H, Xiang, Q, Wang, Z, Paterson, N.G, He, C, Zhang, Y, Wang, W, Dong, C.
Deposit date:2013-10-08
Release date:2014-06-25
Last modified:2014-07-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for outer membrane lipopolysaccharide insertion.
Nature, 511, 2014
8JP3
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BU of 8jp3 by Molmil
FCP trimer in diatom Thalassiosira pseudonana
Descriptor: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, CHLOROPHYLL A, ...
Authors:Feng, Y, Li, Z, Zhou, C.C, Liu, C, Shen, J.R, Wang, W.
Deposit date:2023-06-10
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:FCP trimer in diatom Thalassiosira pseudonana
To Be Published
8GQR
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BU of 8gqr by Molmil
Crystal structure of VioD with FAD
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, SULFATE ION, ...
Authors:Ran, T, Wang, W, Xu, M.
Deposit date:2022-08-30
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for substrate binding and catalytic mechanism of the key enzyme VioD in the violacein synthesis pathway.
Proteins, 91, 2023
8H0M
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BU of 8h0m by Molmil
Crystal structure of VioD
Descriptor: (2S)-2-ethylhexan-1-ol, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Xu, M, Ran, T, Wang, W.
Deposit date:2022-09-29
Release date:2023-04-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Structural basis for substrate binding and catalytic mechanism of the key enzyme VioD in the violacein synthesis pathway.
Proteins, 91, 2023
8GOY
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BU of 8goy by Molmil
SulE P44R
Descriptor: 5-[(4,6-dimethoxypyrimidin-2-yl)carbamoylsulfamoyl]-1-methyl-pyrazole-4-carboxylic acid, Alpha/beta fold hydrolase, GLYCEROL
Authors:Liu, B, He, J, Ran, T, Wang, W.
Deposit date:2022-08-25
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.784 Å)
Cite:Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity.
Nat Commun, 14, 2023
8GOL
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BU of 8gol by Molmil
crystal structure of SulE
Descriptor: 2-[(4-chloranyl-6-methoxy-pyrimidin-2-yl)carbamoylsulfamoyl]benzoic acid, Alpha/beta fold hydrolase, GLYCEROL
Authors:Liu, B, Ran, T, Wang, W, He, J.
Deposit date:2022-08-25
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity.
Nat Commun, 14, 2023
8GP0
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BU of 8gp0 by Molmil
crystal structure of SulE
Descriptor: Alpha/beta fold hydrolase, CITRIC ACID, GLYCEROL
Authors:Liu, B, Ran, T, wang, W, He, J.
Deposit date:2022-08-25
Release date:2023-08-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity.
Nat Commun, 14, 2023
7UFZ
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BU of 7ufz by Molmil
Crystal structure of TDP1 complexed with compound XZ768
Descriptor: (4-{[(4S)-2-phenylimidazo[1,2-a]pyridin-3-yl]amino}phenyl)phosphonic acid, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Lountos, G.T, Zhao, X.Z, Wang, W, Tropea, J.E, Needle, D, Pommier, Y, Burke, T.R.
Deposit date:2022-03-23
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.559 Å)
Cite:Phosphonic acid-containing inhibitors of tyrosyl-DNA phosphodiesterase 1.
Front Chem, 10, 2022
7UFY
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BU of 7ufy by Molmil
Crystal structure of TDP1 complexed with compound XZ766
Descriptor: 1,2-ETHANEDIOL, Tyrosyl-DNA phosphodiesterase 1, [(4-{[(4S)-2,7-diphenylimidazo[1,2-a]pyridin-3-yl]amino}phenyl)methyl]phosphonic acid
Authors:Lountos, G.T, Zhao, X.Z, Wang, W, Tropea, J.E, Needle, D, Pommier, Y, Burke, T.R.
Deposit date:2022-03-23
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.584 Å)
Cite:Phosphonic acid-containing inhibitors of tyrosyl-DNA phosphodiesterase 1.
Front Chem, 10, 2022
8HEH
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BU of 8heh by Molmil
Crystal structure of GCN5-related N-acetyltransferase 05790
Descriptor: COENZYME A, GLYCEROL, GNAT family N-acetyltransferase
Authors:Xu, M.X, Ran, T.T, Wang, W.
Deposit date:2022-11-08
Release date:2022-12-21
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of prodigiosin binding protein PgbP, a GNAT family protein, in Serratia marcescens FS14.
Biochem.Biophys.Res.Commun., 640, 2022
8P5Y
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BU of 8p5y by Molmil
Artificial transfer hydrogenase with a Mn-12 cofactor and Streptavidin S112Y-K121M mutant
Descriptor: 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)ethyl]pentanamide, BROMIDE ION, CHLORIDE ION, ...
Authors:Lau, K, Wang, W, Pojer, F, Larabi, A.
Deposit date:2023-05-24
Release date:2023-09-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Manganese Transfer Hydrogenases Based on the Biotin-Streptavidin Technology.
Angew.Chem.Int.Ed.Engl., 62, 2023
8P5Z
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BU of 8p5z by Molmil
Artificial transfer hydrogenase with a Mn-5 cofactor and Streptavidin S112Y-K121M mutant
Descriptor: 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-[(5-methylpyridin-2-yl)methylamino]ethyl]pentanamide, BROMIDE ION, GLYCEROL, ...
Authors:Lau, K, Wang, W, Pojer, F, Larabi, A.
Deposit date:2023-05-24
Release date:2023-09-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Manganese Transfer Hydrogenases Based on the Biotin-Streptavidin Technology.
Angew.Chem.Int.Ed.Engl., 62, 2023
8H4E
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BU of 8h4e by Molmil
Blasnase-T13A/P55N with D-asn
Descriptor: D-ASPARAGINE, FORMIC ACID, L-asparaginase, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H46
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BU of 8h46 by Molmil
Blasnase-T13A/P55N with L-asn
Descriptor: ASPARAGINE, FORMIC ACID, GLYCEROL, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H47
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BU of 8h47 by Molmil
Blasnase-T13A/P55F
Descriptor: FORMIC ACID, GLYCEROL, L-asparaginase, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H4B
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BU of 8h4b by Molmil
Blasnase-T13A/M57P with L-asn
Descriptor: ASPARAGINE, FORMIC ACID, L-asparaginase, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H4D
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BU of 8h4d by Molmil
Blasnase-T13A/M57N
Descriptor: FORMIC ACID, GLYCEROL, L-asparaginase, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H44
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BU of 8h44 by Molmil
Blasnase-P55N
Descriptor: FORMIC ACID, L-asparaginase, MAGNESIUM ION
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H45
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BU of 8h45 by Molmil
Blasnase-T13A/P55N
Descriptor: FORMIC ACID, L-asparaginase, MAGNESIUM ION
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published

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PDB entries from 2024-06-19

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