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PDB: 946 results

3USM
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Crystal Structure of LeuT bound to L-selenomethionine in space group C2 from lipid bicelles (collected at 1.2 A)
Descriptor: IODIDE ION, PHOSPHOCHOLINE, SELENOMETHIONINE, ...
Authors:Wang, H, Elferich, J, Gouaux, E.
Deposit date:2011-11-23
Release date:2012-01-11
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.008 Å)
Cite:Structures of LeuT in bicelles define conformation and substrate binding in a membrane-like context.
Nat.Struct.Mol.Biol., 19, 2012
2DB7
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BU of 2db7 by Molmil
Crystal structure of hypothetical protein MS0332
Descriptor: Hairy/enhancer-of-split related with YRPW motif 1
Authors:Wang, H, Takemoto-Hori, C, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-15
Release date:2006-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of hypothetical protein MS0332
To be Published
1WDT
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BU of 1wdt by Molmil
Crystal structure of ttk003000868 from Thermus thermophilus HB8
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, elongation factor G homolog
Authors:Wang, H, Takemoto-Hori, C, Murayama, K, Sekine, S, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-17
Release date:2005-05-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of ttk003000868 from Thermus thermophilus HB8
To be published
1WWP
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BU of 1wwp by Molmil
Crystal structure of ttk003001694 from Thermus Thermophilus HB8
Descriptor: hypothetical protein TTHA0636
Authors:Wang, H, Murayama, K, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2005-07-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of ttk003001694 from Thermus Thermophilus HB8
TO BE PUBLISHED
8H1K
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BU of 8h1k by Molmil
Crystal structure of glucose-2-epimerase from Runella slithyformis Runsl_4512
Descriptor: FORMIC ACID, GLYCEROL, N-acylglucosamine 2-epimerase
Authors:Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
Deposit date:2022-10-03
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023
8H1M
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BU of 8h1m by Molmil
Crystal structure of glucose-2-epimerase mutant_D254A from Runella slithyformis Runsl_4512
Descriptor: FORMIC ACID, N-acylglucosamine 2-epimerase
Authors:Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
Deposit date:2022-10-03
Release date:2023-07-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023
8H1N
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BU of 8h1n by Molmil
Crystal structure of glucose-2-epimerase mutant_D254A in complex with D-Glucitol from Runella slithyformis Runsl_4512
Descriptor: FORMIC ACID, N-acylglucosamine 2-epimerase, sorbitol
Authors:Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
Deposit date:2022-10-03
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023
2DTC
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BU of 2dtc by Molmil
Crystal structure of MS0666
Descriptor: RAL GUANINE NUCLEOTIDE EXCHANGE FACTOR RALGPS1A
Authors:Wang, H, Kishishita, S, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-12
Release date:2007-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of MS0666
To be Published
3A6N
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BU of 3a6n by Molmil
The nucleosome containing a testis-specific histone variant, human H3T
Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H, Kagawa, W, Osakabe, A, Koichiro, K, Shiga, T, Kimura, H, Kurumizaka, H.
Deposit date:2009-09-04
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T
Proc.Natl.Acad.Sci.USA, 107, 2010
5F1B
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BU of 5f1b by Molmil
Structural basis of Ebola virus entry: viral glycoprotein bound to its endosomal receptor Niemann-Pick C1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GP1, GP2, ...
Authors:Wang, H, Shi, Y, Song, J, Qi, J, Lu, G, Yan, J, Gao, G.F.
Deposit date:2015-11-30
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1.
Cell, 164, 2016
5F18
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BU of 5f18 by Molmil
Structural basis of Ebola virus entry: viral glycoprotein bound to its endosomal receptor Niemann-Pick C1
Descriptor: Niemann-Pick C1 protein
Authors:Wang, H, Shi, Y, Song, J, Qi, J, Lu, G, Yan, J, Gao, G.F.
Deposit date:2015-11-30
Release date:2016-01-20
Last modified:2016-01-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1.
Cell, 164, 2016
3AFA
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BU of 3afa by Molmil
The human nucleosome structure
Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H, Kagawa, W, Osakabe, A, Koichiro, K, Shiga, T, Kimura, H, Kurumizaka, H.
Deposit date:2010-02-24
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T
Proc.Natl.Acad.Sci.USA, 107, 2010
3AV1
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BU of 3av1 by Molmil
The human nucleosome structure containing the histone variant H3.2
Descriptor: 146-MER DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Tachiwana, H, Osakabe, A, Shiga, T, Miya, Y, Kimura, H, Kagawa, W, Kurumizaka, H.
Deposit date:2011-02-18
Release date:2011-06-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of human nucleosomes containing major histone H3 variants
Acta Crystallogr.,Sect.D, 67, 2011
3AV2
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BU of 3av2 by Molmil
The human nucleosome structure containing the histone variant H3.3
Descriptor: 146-MER DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Tachiwana, H, Osakabe, A, Shiga, T, Miya, M, Kimura, H, Kagawa, W, Kurumizaka, H.
Deposit date:2011-02-18
Release date:2011-06-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of human nucleosomes containing major histone H3 variants
Acta Crystallogr.,Sect.D, 67, 2011
7B8V
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BU of 7b8v by Molmil
Circular permutant of ribosomal protein S6, P54-55
Descriptor: 30S ribosomal protein S6
Authors:Wang, H, Logan, D.T, Oliveberg, M.
Deposit date:2020-12-13
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.863 Å)
Cite:Circular permutant of ribosomal protein S6, P54-55
To Be Published
8JIZ
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BU of 8jiz by Molmil
Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab5F6 in two fab bind conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab5F6 Heavy Chain, ...
Authors:Wang, H, Zhu, S.
Deposit date:2023-05-29
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab5F6 in two fab bind conformation.
To Be Published
8JJ1
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BU of 8jj1 by Molmil
Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab2G7 in two fab conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 2G7 Heavy Chain, ...
Authors:Wang, H, Zhu, S.
Deposit date:2023-05-29
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Cryo-EM structure of GluN1-2A NMDAR in complex with human Fab2G7 in two fab conformation
To Be Published
3AN2
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BU of 3an2 by Molmil
The structure of the centromeric nucleosome containing CENP-A
Descriptor: 147 mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Tachiwana, H, Kagawa, W, Shiga, T, Saito, K, Osakabe, A, Hayashi-Takanaka, Y, Park, S.-Y, Kimura, H, Kurumizaka, H.
Deposit date:2010-08-27
Release date:2011-07-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the human centromeric nucleosome containing CENP-A
Nature, 476, 2011
2DUC
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BU of 2duc by Molmil
Crystal structure of SARS coronavirus main proteinase(3CLPRO)
Descriptor: Replicase polyprotein 1ab
Authors:Wang, H, Kim, Y.T, Muramatsu, T, Takemoto, C, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-21
Release date:2007-07-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:SARS-CoV 3CL protease cleaves its C-terminal autoprocessing site by novel subsite cooperativity
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
4O4D
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BU of 4o4d by Molmil
Crystal Structure of an Inositol hexakisphosphate kinase EhIP6KA in complexed with ATP and Ins(1,4,5)P3
Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, ...
Authors:Wang, H, Shears, S.B.
Deposit date:2013-12-18
Release date:2014-06-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:IP6K structure and the molecular determinants of catalytic specificity in an inositol phosphate kinase family.
Nat Commun, 5, 2014
4O4F
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BU of 4o4f by Molmil
Crystal Structure of an Inositol hexakisphosphate kinase EhIP6KA in complexed with ATP and InsP6
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Inositol hexakisphosphate kinase, ...
Authors:Wang, H, Shears, S.B.
Deposit date:2013-12-18
Release date:2014-06-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:IP6K structure and the molecular determinants of catalytic specificity in an inositol phosphate kinase family.
Nat Commun, 5, 2014
2YV5
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BU of 2yv5 by Molmil
Crystal structure of Yjeq from Aquifex aeolicus
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, YjeQ protein, ...
Authors:Wang, H, Kaminishi, T, Hanawa-Suetsugu, K, Takemoto, C, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-09
Release date:2008-04-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of YjeQ from Aquifex aeolicus
To be Published
8G9E
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BU of 8g9e by Molmil
Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with AMP-PNP and 5-(PCF2P)-IP5, an analog of 5-IP7
Descriptor: Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Wang, H, Shears, S.B.
Deposit date:2023-02-21
Release date:2024-01-03
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Fluorination Influences the Bioisostery of Myo-Inositol Pyrophosphate Analogs.
Chemistry, 29, 2023
2Z0I
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BU of 2z0i by Molmil
Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus
Descriptor: Delta-aminolevulinic acid dehydratase
Authors:Wang, H, Xie, Y, Kawazoe, M, Kishishita, S, Murayama, K, Takemoto, C, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus
To be Published
6LNQ
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BU of 6lnq by Molmil
The co-crystal structure of SARS-CoV 3C Like Protease with aldehyde inhibitor M7
Descriptor: N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1H-indole-2-carboxamide, Severe Acute Respiratory Syndrome Coronavirus 3c Like Protease
Authors:Wang, H, Shang, L.Q.
Deposit date:2020-01-01
Release date:2020-05-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.244 Å)
Cite:Comprehensive Insights into the Catalytic Mechanism of Middle East Respiratory Syndrome 3C-Like Protease and Severe Acute Respiratory Syndrome 3C-Like Protease.
Acs Catalysis, 10, 2020

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