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PDB: 1001 results

3LZT
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REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION
Descriptor: ACETATE ION, LYSOZYME, NITRATE ION
Authors:Walsh, M.A, Schneider, T, Sieker, L.C, Dauter, Z, Lamzin, V, Wilson, K.S.
Deposit date:1997-03-23
Release date:1998-03-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (0.925 Å)
Cite:Refinement of triclinic hen egg-white lysozyme at atomic resolution.
Acta Crystallogr.,Sect.D, 54, 1998
1DW9
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Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site
Descriptor: CHLORIDE ION, CYANATE LYASE, SULFATE ION
Authors:Walsh, M.A, Otwinowski, Z, Perrakis, A, Anderson, P.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:1999-12-03
Release date:2000-05-16
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of Cyanase Reveals that a Novel Dimeric and Decameric Arrangement of Subunits is Required for Formation of the Enzyme Active Site
Structure, 8, 2000
1DWK
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STRUCTURE OF CYANASE WITH THE DI-ANION OXALATE BOUND AT THE ENZYME ACTIVE SITE
Descriptor: CYANATE HYDRATASE, OXALATE ION, SULFATE ION
Authors:Walsh, M.A, Otwinowski, Z, Perrakis, A, Anderson, P.M, Joachimiak, A.
Deposit date:1999-12-07
Release date:2000-05-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of Cyanase Reveals that a Novel Dimeric and Decameric Arrangement of Subunits is Required for Formation of the Enzyme Active Site.
Structure, 8, 2000
4LZT
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BU of 4lzt by Molmil
ATOMIC RESOLUTION REFINEMENT OF TRICLINIC HEW LYSOZYME AT 295K
Descriptor: LYSOZYME, NITRATE ION
Authors:Walsh, M.A, Schneider, T, Sieker, L.C, Dauter, Z, Lamzin, V, Wilson, K.S.
Deposit date:1997-03-31
Release date:1998-04-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Refinement of triclinic hen egg-white lysozyme at atomic resolution.
Acta Crystallogr.,Sect.D, 54, 1998
8SNI
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BU of 8sni by Molmil
Hydroxynitrile Lyase from Hevea brasiliensis with Forty Mutations
Descriptor: (S)-hydroxynitrile lyase, 1,2-ETHANEDIOL, BENZOIC ACID, ...
Authors:Walsh, M.E, Greenberg, L.R, Kazlauskas, R.J, Pierce, C.T, Aihara, H, Evans, R.L, Shi, K.
Deposit date:2023-04-27
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:To be published
To Be Published
1BU5
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X-RAY CRYSTAL STRUCTURE OF THE DESULFOVIBRIO VULGARIS (HILDENBOROUGH) APOFLAVODOXIN-RIBOFLAVIN COMPLEX
Descriptor: PROTEIN (FLAVODOXIN), RIBOFLAVIN, SULFATE ION
Authors:Walsh, M.A, Mccarthy, A, O'Farrell, P.A, Mccardle, P, Cunningham, P.D, Mayhew, S.G, Higgins, T.M.
Deposit date:1998-09-12
Release date:1999-02-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:X-ray crystal structure of the Desulfovibrio vulgaris (Hildenborough) apoflavodoxin-riboflavin complex.
Eur.J.Biochem., 258, 1998
1AZL
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BU of 1azl by Molmil
G61V FLAVODOXIN MUTANT FROM DESULFOVIBRIO VULGARIS
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:Walsh, M.A, Mccarthy, A, O'Farrell, P.A, Voordouw, G, Higgins, T, Mayhew, S.G.
Deposit date:1997-11-18
Release date:1998-05-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Modulation of the redox potentials of FMN in Desulfovibrio vulgaris flavodoxin: thermodynamic properties and crystal structures of glycine-61 mutants.
Biochemistry, 37, 1998
1SRV
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THERMUS THERMOPHILUS GROEL (HSP60 CLASS) FRAGMENT (APICAL DOMAIN) COMPRISING RESIDUES 192-336
Descriptor: PROTEIN (GROEL (HSP60 CLASS))
Authors:Walsh, M.A, Dementieva, I, Evans, G, Sanishvili, R, Joachimiak, A.
Deposit date:1999-03-02
Release date:1999-03-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Taking MAD to the extreme: ultrafast protein structure determination.
Acta Crystallogr.,Sect.D, 55, 1999
7NW2
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Crystal Structure of SARS-CoV-2 main protease in complex with LON-WEI-adc59df6-47
Descriptor: 3C-like proteinase, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Fearon, D, Douangamath, A, Aimon, A, Brandao-Neto, J, Dias, A, Dunnett, L, Gehrtz, P, Gorrie-Stone, T.J, Lukacik, P, Powell, A.J, Skyner, R, Strain-Damerell, C.M, Zaidman, D, London, N, Walsh, M.A, von Delft, F, Covid Moonshot Consortium
Deposit date:2021-03-16
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An automatic pipeline for the design of irreversible derivatives identifies a potent SARS-CoV-2 M pro inhibitor.
Cell Chem Biol, 28, 2021
1C7F
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D95E OXIDIZED FLAVODOXIN MUTANT FROM D. VULGARIS
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:McCarthy, A, Walsh, M, Higgins, T, D'Arcy, D.
Deposit date:2000-02-11
Release date:2000-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic Investigation of the Role of Aspartate 95 in the Modulation of the Redox Potentials Of Desulfovibrio Vulgaris Flavodoxin
Biochemistry, 41, 2002
1C7E
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D95E HYDROQUINONE FLAVODOXIN MUTANT FROM D. VULGARIS
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:McCarthy, A, Walsh, M, Higgins, T, D'Arcy, D.
Deposit date:2000-02-16
Release date:2000-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystallographic Investigation of the Role of Aspartate 95 in the Modulation of the Redox Potentials Of Desulfovibrio Vulgaris Flavodoxin
Biochemistry, 41, 2002
4B7G
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BU of 4b7g by Molmil
Structure of a bacterial catalase
Descriptor: CATALASE, CHLORIDE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Gumiero, A, Walsh, M.
Deposit date:2012-08-20
Release date:2013-08-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Structural and Dynamic Investigation of the Inhibition of Catalase by Nitric Oxide.
Org.Biomol.Chem., 11, 2013
4B7H
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BU of 4b7h by Molmil
Structure of a highdose liganded bacterial catalase
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CATALASE, CHLORIDE ION, ...
Authors:Gumiero, A, Walsh, M.
Deposit date:2012-08-20
Release date:2013-08-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:A Structural and Dynamic Investigation of the Inhibition of Catalase by Nitric Oxide.
Org.Biomol.Chem., 11, 2013
7Z59
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BU of 7z59 by Molmil
SARS-CoV-2 main protease (Mpro) covalently modified with a penicillin derivative
Descriptor: (3S)-4-[[2,4-bis(fluoranyl)phenyl]methoxy]-2-methyl-4-oxidanylidene-3-[[(Z)-3-oxidanylidene-2-(2-phenoxyethanoylamino)prop-1-enyl]amino]butane-2-sulfinic acid, 1,2-ETHANEDIOL, 3C-like proteinase nsp5
Authors:Owen, C.D, Malla, T.R, Brewitz, L, Lukacik, P, Strain-Damerell, C, Mikolajek, H, Muntean, D.G, Aslam, H, Salah, E, Tumber, A, Schofield, C.J, Walsh, M.A.
Deposit date:2022-03-08
Release date:2022-06-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Penicillin Derivatives Inhibit the SARS-CoV-2 Main Protease by Reaction with Its Nucleophilic Cysteine.
J.Med.Chem., 65, 2022
7Z4S
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BU of 7z4s by Molmil
Crystal structure of SARS-CoV-2 Mpro in complex with cyclic peptide GM4 including unnatural amino acids.
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER, ...
Authors:Owen, C.D, Miura, T, Malla, T, Lukacik, L, Strain-Damerell, C.M, Tumber, A, Brewitz, L, McDonough, M.A, Salah, E, Terasaka, N, Katoh, T, Kawamura, A, Schofield, C.J, Suga, H, Walsh, M.A.
Deposit date:2022-03-04
Release date:2023-03-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:In vitro selection of macrocyclic peptide inhibitors containing cyclic gamma 2,4 -amino acids targeting the SARS-CoV-2 main protease.
Nat.Chem., 15, 2023
1SFK
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BU of 1sfk by Molmil
Core (C) protein from West Nile Virus, subtype Kunjin
Descriptor: CALCIUM ION, CHLORIDE ION, Core protein, ...
Authors:Dokland, T, Walsh, M, Mackenzie, J.M, Khromykh, A.A, Ee, K.-H, Wang, S.
Deposit date:2004-02-19
Release date:2004-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:West nile virus core protein; tetramer structure and ribbon formation
Structure, 12, 2004
1RZ0
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BU of 1rz0 by Molmil
Flavin reductase PheA2 in native state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, phenol 2-hydroxylase component B
Authors:van den Heuvel, R.H, Westphal, A.H, Heck, A.J, Walsh, M.A, Rovida, S, van Berkel, W.J, Mattevi, A.
Deposit date:2003-12-23
Release date:2004-04-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Studies on Flavin Reductase PheA2 Reveal Binding of NAD in an Unusual Folded Conformation and Support Novel Mechanism of Action.
J.Biol.Chem., 279, 2004
1RZ1
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Reduced flavin reductase PheA2 in complex with NAD
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, phenol 2-hydroxylase component B
Authors:Van Den Heuvel, R.H, Westphal, A.H, Heck, A.J, Walsh, M.A, Rovida, S, Van Berkel, W.J, Mattevi, A.
Deposit date:2003-12-23
Release date:2004-04-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Studies on Flavin Reductase PheA2 Reveal Binding of NAD in an Unusual Folded Conformation and Support Novel Mechanism of Action.
J.Biol.Chem., 279, 2004
6AC8
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BU of 6ac8 by Molmil
Crystal structure of Mycobacterium smegmatis Mfd at 2.75 A resolution
Descriptor: Mycobacterium smegmatis Mfd, SULFATE ION
Authors:Putta, S, Fox, G.C, Walsh, M.A, Rao, D.N, Nagaraja, V, Natesh, R.
Deposit date:2018-07-25
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for nucleotide-mediated remodelling mechanism of Mycobacterium Mfd
To Be Published
8P1S
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BU of 8p1s by Molmil
Bifidobacterium asteroides alpha-L-fucosidase (TT1819) in complex with fucose.
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bifidobacterium asteroides alpha-L-fucosidase (TT1819), ...
Authors:Owen, C.D, Penner, M, Gascuena, A.N, Wu, H, Hernando, P.J, Monaco, S, Le Gall, G, Gardner, R, Ndeh, D, Urbanowicz, P.A, Spencer, D.I.R, Walsh, M.A, Angulo, J, Juge, N.
Deposit date:2023-05-12
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exploring sequence, structure and function of microbial fucosidases from glycoside hydrolase GH29 family
To Be Published
2VGZ
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CRYSTAL STRUCTURE OF HUMAN KYNURENINE AMINOTRANSFERASE II
Descriptor: IODIDE ION, KYNURENINE/ALPHA-AMINOADIPATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Rossi, F, Garavaglia, S, Montalbano, V, Walsh, M.A, Rizzi, M.
Deposit date:2007-11-16
Release date:2007-12-04
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Human Kynurenine Aminotransferase II, a Drug Target for the Treatment of Schizophrenia.
J.Biol.Chem., 283, 2008
6AC6
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Ab initio crystal structure of Selenomethionine labelled Mycobacterium smegmatis Mfd
Descriptor: Mycobacterium smegmatis Mfd, SULFATE ION
Authors:Putta, S, Fox, G.C, Walsh, M.A, Rao, D.N, Nagaraja, V, Natesh, R.
Deposit date:2018-07-25
Release date:2019-08-28
Method:X-RAY DIFFRACTION (2.989 Å)
Cite:Structural basis for nucleotide-mediated remodelling mechanism of Mycobacterium Mfd
To Be Published
6ACA
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Crystal structure of Mycobacterium tuberculosis Mfd at 3.6 A resolution
Descriptor: Mycobacterium tuberculosis Mfd
Authors:Putta, S, Fox, G.C, Walsh, M.A, Rao, D.N, Nagaraja, V, Natesh, R.
Deposit date:2018-07-26
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for nucleotide-mediated remodelling mechanism of Mycobacterium Mfd
To Be Published
6ACX
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Crystal structure of Mycobacterium smegmatis Mfd in complex with ADP + Pi at 3.5 A resolution.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Mycobacterium smegmatis Mfd, PHOSPHATE ION, ...
Authors:Putta, S, Fox, G.C, Walsh, M.A, Rao, D.N, Nagaraja, V, Natesh, R.
Deposit date:2018-07-27
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for nucleotide-mediated remodelling mechanism of Mycobacterium Mfd
To Be Published
8B2T
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SARS-CoV-2 Main Protease (Mpro) in complex with nirmatrelvir alkyne
Descriptor: 3C-like proteinase nsp5, Nirmatrelvir (reacted form)
Authors:Owen, C.D, Crawshaw, A.D, Warren, A.J, Trincao, J, Zhao, Y, Brewitz, L, Malla, T.R, Salah, E, Petra, L, Strain-Damerell, C, Schofield, C.J, Walsh, M.A.
Deposit date:2022-09-14
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.893 Å)
Cite:Alkyne Derivatives of SARS-CoV-2 Main Protease Inhibitors Including Nirmatrelvir Inhibit by Reacting Covalently with the Nucleophilic Cysteine.
J.Med.Chem., 66, 2023

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