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PDB: 174 件
2E3S
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BU of 2e3s by Molmil
Crystal structure of CERT START domain co-crystallized with C24-ceramide (P21)
分子名称: Lipid-transfer protein CERT
著者Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
登録日2006-11-28
公開日2007-12-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2EFE
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BU of 2efe by Molmil
Ara7-GDPNH2/AtVps9a
分子名称: AMINOPHOSPHONIC ACID-GUANYLATE ESTER, Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like
著者Ihara, K, Uejima, T, Wakatsuki, S.
登録日2007-02-22
公開日2008-02-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
2F10
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BU of 2f10 by Molmil
Crystal Structure of the Human Sialidase Neu2 in Complex with Peramivir inhibitor
分子名称: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID, PHOSPHATE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, McKimm-Breschkin, J, Colman, P.M, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-14
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 in Complex with Peramivir inhibitor
To be Published
2D6L
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BU of 2d6l by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 2)
分子名称: lectin, galactose binding, soluble 9
著者Nagae, M, Nishi, N, Nakamura, T, Wakatsuki, S, Kato, R.
登録日2005-11-14
公開日2006-09-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6K
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BU of 2d6k by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 1)
分子名称: lectin, galactose binding, soluble 9
著者Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R.
登録日2005-11-14
公開日2006-09-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6M
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BU of 2d6m by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD in complex with lactose
分子名称: beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, lectin, galactose binding, ...
著者Nagae, M, Nishi, N, Nakamura, T, Wakatsuki, S, Kato, R.
登録日2005-11-14
公開日2006-09-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2DUO
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BU of 2duo by Molmil
Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+-bound form
分子名称: CALCIUM ION, CHLORIDE ION, Vesicular integral-membrane protein VIP36
著者Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S.
登録日2006-07-25
公開日2007-07-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36
J.Biol.Chem., 282, 2007
2F13
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Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor
分子名称: (2R)-2,3-dihydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid, PHOSPHATE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, Mann, M.C, Thomson, R.J, Dyason, J.C, von Itzstein, M, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-14
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 in Complex with 2',3'- dihydroxypropyl ether mimetic Inhibitor
To be Published
2F11
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Crystal Structure of the Human Sialidase Neu2 in Complex with isobutyl ether mimetic Inhibitor
分子名称: 2-methylpropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid, PHOSPHATE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, Mann, M.C, Thomson, R.J, Dyason, J.C, von Itzstein, M, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-14
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 in Complex with isobutyl ether mimetic Inhibitor
To be Published
2DUR
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Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man2-bound form
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S.
登録日2006-07-25
公開日2007-07-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36
J.Biol.Chem., 282, 2007
2DUQ
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BU of 2duq by Molmil
Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man-bound form
分子名称: CALCIUM ION, CHLORIDE ION, Vesicular integral-membrane protein VIP36, ...
著者Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S.
登録日2006-07-25
公開日2007-07-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36
J.Biol.Chem., 282, 2007
2DUP
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BU of 2dup by Molmil
Crystal structure of VIP36 exoplasmic/lumenal domain, metal-free form
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S.
登録日2006-07-25
公開日2007-07-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36
J.Biol.Chem., 282, 2007
2E3Q
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BU of 2e3q by Molmil
Crystal structure of CERT START domain in complex with C18-ceramide (P212121)
分子名称: DIMETHYL SULFOXIDE, Lipid-transfer protein CERT, N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE
著者Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
登録日2006-11-28
公開日2007-12-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2EAE
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BU of 2eae by Molmil
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complexes with products
分子名称: Alpha-fucosidase, CALCIUM ION, alpha-L-fucopyranose, ...
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EFH
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BU of 2efh by Molmil
Ara7-GDP/AtVps9a(D185N)
分子名称: GUANOSINE-5'-DIPHOSPHATE, Similarity to vacuolar protein sorting-associated protein VPS9, Small GTP-binding protein-like
著者Ihara, K, Uejima, T, Wakatsuki, S.
登録日2007-02-22
公開日2008-02-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
J.Biol.Chem., 285, 2010
2EAB
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BU of 2eab by Molmil
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form)
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-fucosidase, ...
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2F26
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BU of 2f26 by Molmil
Crystal Structure of the Human Sialidase Neu2 E111Q-Q112E Double Mutant
分子名称: CHLORIDE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-15
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 E111Q-Q112E Double Mutant
To be Published
2F0Z
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BU of 2f0z by Molmil
Crystal Structure of the Human Sialidase Neu2 in Complex with Zanamivir inhibitor
分子名称: Sialidase 2, ZANAMIVIR
著者Chavas, L.M.G, Kato, R, McKimm-Breschkin, J, Colman, P.M, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-14
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 in Complex with Zanamivir inhibitor
To be Published
2F25
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Crystal Structure of the Human Sialidase Neu2 E111Q Mutant in Complex with DANA Inhibitor
分子名称: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Sialidase 2
著者Chavas, L.M.G, Kato, R, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-15
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 E111Q Mutant in Complex with DANA Inhibitor
To be Published
2F24
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Crystal Structure of the Human Sialidase Neu2 E111Q Mutant
分子名称: CHLORIDE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-15
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 E111Q Mutant
To be Published
2F29
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Crystal Structure of the Human Sialidase Neu2 Q116E Mutant in Complex with DANA Inhibitor
分子名称: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Sialidase 2
著者Chavas, L.M.G, Kato, R, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-15
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.921 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 Q116E Mutant in Complex with DANA Inhibitor
To be Published
2F12
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Crystal Structure of the Human Sialidase Neu2 in Complex with 3- hydroxypropyl ether mimetic Inhibitor
分子名称: 3-hydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid, PHOSPHATE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, Mann, M.C, Thomson, R.J, Dyason, J.C, von Itzstein, M, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-14
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 in Complex with 3- hydroxypropyl ether mimetic Inhibitor
To be Published
2F28
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Crystal Structure of the Human Sialidase Neu2 Q116E Mutant
分子名称: CHLORIDE ION, Sialidase 2
著者Chavas, L.M.G, Kato, R, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-15
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 Q116E Mutant
To be Published
2F27
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Crystal Structure of the Human Sialidase Neu2 E111Q-Q112E Double Mutant in Complex with DANA Inhibitor
分子名称: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Sialidase 2
著者Chavas, L.M.G, Kato, R, Fusi, P, Tringali, C, Venerando, B, Tettamanti, G, Monti, E, Wakatsuki, S.
登録日2005-11-15
公開日2006-11-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structure of the Human Sialidase Neu2 E111Q-Q112E Double Mutant in Complex with DANA Inhibitor
To be Published

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