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PDB: 12988 results

1LWH
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CRYSTAL STRUCTURE OF T. MARITIMA 4-ALPHA-GLUCANOTRANSFERASE
Descriptor: 4-alpha-glucanotransferase, CALCIUM ION
Authors:Roujeinikova, A, Raasch, C, Sedelnikova, S, Liebl, W, Rice, D.W.
Deposit date:2002-05-31
Release date:2002-07-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 4-ALPHA-GLUCANOTRANSFERASE AND ITS ACARBOSE COMPLEX: IMPLICATIONS FOR SUBSTRATE SPECIFICITY AND CATALYSIS
J.Mol.Biol., 321, 2002
2ZZS
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Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633
Descriptor: Cytochrome c554, GLYCEROL, HEME C
Authors:Akazaki, H, Kawai, F, Kumaki, Y, Sekine, K, Hakamata, W, Nishio, T, Park, S.-Y, Oku, T.
Deposit date:2009-02-24
Release date:2010-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633
To be Published
3A0O
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Crystal structure of alginate lyase from Agrobacterium tumefaciens C58
Descriptor: CHLORIDE ION, Oligo alginate lyase
Authors:Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-03-23
Release date:2010-03-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
2FG5
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Crystal structure of human RAB31 in complex with a GTP analogue
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-31
Authors:Tempel, W, Wang, J, Ismail, S, Arrowsmith, C, Edwards, A, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2005-12-21
Release date:2006-01-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Crystal structure of human RAB31 in complex with a GTP analogue
To be Published
2FI0
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The crystal structure of the conserved domain protein from Streptococcus pneumoniae TIGR4
Descriptor: conserved domain protein
Authors:Zhang, R, Li, H, Abdullah, J, Collart, F, Cymborowski, M, Minor, W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-12-27
Release date:2006-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of the conserved domain protein from Streptococcus pneumoniae TIGR4
To be Published
1UXW
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CRYSTAL STRUCTURE OF HLA-B*2709 COMPLEXED WITH THE LATENT MEMBRANE PROTEIN 2 PEPTIDE (LMP2) OF EPSTEIN-BARR VIRUS
Descriptor: BETA-2-MICROGLOBULIN, GENE TERMINAL PROTEIN (MEMBRANE PROTEIN LMP-2A/LMP-2B), GLYCEROL, ...
Authors:Hulsmeyer, M, Kozerski, C, Fiorillo, M.T, Sorrentino, R, Saenger, W, Ziegler, A, Uchanska-Ziegler, B.
Deposit date:2004-03-01
Release date:2004-11-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Allele-Dependent Similarity between Viral and Self-Peptide Presentation by Hla-B27 Subtypes
J.Biol.Chem., 280, 2005
2OR9
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The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops
Descriptor: Monoclonal anti-c-myc antibody 9E10, synthetic epitope peptide of 9E10
Authors:Krauss, N, Scheerer, P, Hoehne, W.
Deposit date:2007-02-02
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops.
Proteins, 73, 2008
1MRT
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CONFORMATION OF CD-7 METALLOTHIONEIN-2 FROM RAT LIVER IN AQUEOUS SOLUTION DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: CADMIUM ION, CD7 METALLOTHIONEIN-2
Authors:Braun, W, Schultze, P, Woergoetter, E, Wagner, G, Vasak, M, Kaegi, J.H.R, Wuthrich, K.
Deposit date:1990-05-14
Release date:1991-04-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy.
J.Mol.Biol., 203, 1988
1UXS
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CRYSTAL STRUCTURE OF HLA-B*2705 COMPLEXED WITH THE LATENT MEMBRANE PROTEIN 2 PEPTIDE (LMP2)OF EPSTEIN-BARR VIRUS
Descriptor: BETA-2-MICROGLOBULIN, GENE TERMINAL PROTEIN (MEMBRANE PROTEIN LMP-2A/LMP-2B), GLYCEROL, ...
Authors:Hulsmeyer, M, Kozerski, C, Fiorillo, M.T, Sorrentino, R, Saenger, W, Ziegler, A, Uchanska-Ziegler, B.
Deposit date:2004-03-01
Release date:2004-11-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Allele-Dependent Similarity between Viral and Self-Peptide Presentation by Hla-B27 Subtypes
J.Biol.Chem., 280, 2005
1Z3W
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Structure of Phanerochaete chrysosporium cellobiohydrolase Cel7D (CBH58) in complex with cellobioimidazole
Descriptor: (5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, cellulase
Authors:Ubhayasekera, W, Vasella, A, Stahlberg, J, Mowbray, S.L.
Deposit date:2005-03-14
Release date:2005-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of Phanerochaete chrysosporium Cel7D in complex with product and inhibitors
Febs J., 272, 2005
3AFA
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The human nucleosome structure
Descriptor: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ...
Authors:Tachiwana, H, Kagawa, W, Osakabe, A, Koichiro, K, Shiga, T, Kimura, H, Kurumizaka, H.
Deposit date:2010-02-24
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T
Proc.Natl.Acad.Sci.USA, 107, 2010
302D
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META-HYDROXY ANALOGUE OF HOECHST 33258 ('HYDROXYL IN' CONFORMATION) BOUND TO D(CGCGAATTCGCG)2
Descriptor: 3-[5-[5-(4-METHYL-PIPERAZIN-1-YL)-1H-IMIDAZO[4,5-B]PYRIDIN-2-YL]-BENZIMIDAZOL-2-YL]-PHENOL, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Clark, G.R, Squire, C.J, Gray, E.J, Leupin, W, Neidle, S.
Deposit date:1996-06-26
Release date:1997-01-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Designer DNA-binding drugs: the crystal structure of a meta-hydroxy analogue of Hoechst 33258 bound to d(CGCGAATTCGCG)2.
Nucleic Acids Res., 24, 1996
381D
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BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES
Descriptor: 2'-BROMO-4'-EPIDAUNORUBICIN, DNA (5'-D(*TP*GP*(G49)P*CP*CP*G)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*G)-3')
Authors:Dutta, R, Gao, Y.-G, Priebe, W, Wang, A.H.-J.
Deposit date:1998-02-18
Release date:1998-07-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes.
Nucleic Acids Res., 26, 1998
3AKB
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Structural basis for prokaryotic calcium-mediated regulation by a Streptomyces coelicolor calcium-binding protein
Descriptor: CALCIUM ION, Putative calcium binding protein
Authors:Zhao, X, Pang, H, Wang, S, Zhou, W, Yang, K, Bartlam, M.
Deposit date:2010-07-09
Release date:2011-01-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for prokaryotic calciummediated regulation by a Streptomyces coelicolor calcium binding protein
Protein Cell, 1, 2010
3AFN
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Crystal structure of aldose reductase A1-R complexed with NADP
Descriptor: Carbonyl reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TERTIARY-BUTYL ALCOHOL
Authors:Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2010-03-10
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
2DIR
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Solution structure of the THUMP domain of THUMP domain-containing protein 1
Descriptor: THUMP domain-containing protein 1
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-30
Release date:2006-09-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the THUMP domain of THUMP domain-containing protein 1
To be Published
3AMJ
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The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1
Descriptor: ZINC ION, zinc peptidase active subunit, zinc peptidase inactive subunit
Authors:Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2010-08-20
Release date:2011-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011
2DIP
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Solution structure of the ZZ domain of Zinc finger SWIM domain containing protein 2
Descriptor: ZINC ION, Zinc finger SWIM domain-containing protein 2
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-30
Release date:2006-09-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the ZZ domain of Zinc finger SWIM domain containing protein 2
To be Published
3AN2
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The structure of the centromeric nucleosome containing CENP-A
Descriptor: 147 mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Tachiwana, H, Kagawa, W, Shiga, T, Saito, K, Osakabe, A, Hayashi-Takanaka, Y, Park, S.-Y, Kimura, H, Kurumizaka, H.
Deposit date:2010-08-27
Release date:2011-07-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the human centromeric nucleosome containing CENP-A
Nature, 476, 2011
4IKP
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Crystal structure of coactivator-associated arginine methyltransferase 1 with methylenesinefungin
Descriptor: (2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid, GLYCEROL, Histone-arginine methyltransferase CARM1, ...
Authors:Dong, A, Dombrovski, L, He, H, Ibanez, G, Wernimont, A, Zheng, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Min, J, Luo, M, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2012-12-27
Release date:2013-02-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A chemical probe of CARM1 alters epigenetic plasticity against breast cancer cell invasion.
Elife, 8, 2019
1QXH
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Crystal Structure of Escherichia coli Thiol Peroxidase in the Oxidized State
Descriptor: Thiol peroxidase
Authors:Choi, J, Choi, S, Choi, J, Shin, W.
Deposit date:2003-09-06
Release date:2004-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Escherichia coli thiol peroxidase in the oxidized state: insights into intramolecular disulfide formation and substrate binding in atypical 2-Cys peroxiredoxins
J.Biol.Chem., 278, 2003
2DIQ
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Solution structure of the TUDOR domain of Tudor and KH domain containing protein
Descriptor: Tudor and KH domain-containing protein
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-30
Release date:2006-09-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the TUDOR domain of Tudor and KH domain containing protein
To be Published
3BPJ
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Crystal structure of human translation initiation factor 3, subunit 1 alpha
Descriptor: Eukaryotic translation initiation factor 3 subunit J, UNKNOWN ATOM OR ION
Authors:Tempel, W, Nedyalkova, L, Hong, B, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-12-18
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of human translation initiation factor 3, subunit 1 alpha.
To be Published
4IH1
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Crystal structure of Karrikin Insensitive 2 (KAI2) from Arabidopsis thaliana
Descriptor: Hydrolase, alpha/beta fold family protein
Authors:Zhou, X.E, Zhao, L.-H, Wu, Z.-S, Yi, W, Li, S, Li, Y, Xu, Y, Xu, T.-H, Liu, Y, Chen, R.-Z, Kovach, A, Kang, Y, Hou, L, He, Y, Zhang, C, Melcher, K, Xu, H.E.
Deposit date:2012-12-18
Release date:2013-01-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.
Cell Res., 23, 2013
4IH9
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Crystal structure of rice DWARF14 (D14)
Descriptor: Dwarf 88 esterase
Authors:Zhou, X.E, Zhao, L.-H, Wu, Z.-S, Yi, W, Li, S, Li, Y, Xu, Y, Xu, T.-H, Liu, Y, Chen, R.-Z, Kovach, A, Kang, Y, Hou, L, He, Y, Zhang, C, Melcher, K, Xu, H.E.
Deposit date:2012-12-18
Release date:2013-01-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.
Cell Res., 23, 2013

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