Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12920 件

6TJL
DownloadVisualize
BU of 6tjl by Molmil
Mature primitive pytochelatin synthase Alr0975 from Nostoc species bound to glutathione
分子名称: Alr0975 protein, CALCIUM ION, GLUTATHIONE
著者Feiler, C.G, Blankenfeldt, W.
登録日2019-11-26
公開日2020-12-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Mature primitive pytochelatin synthase Alr0975 from Nostoc species bound to glutathione
To Be Published
6TJX
DownloadVisualize
BU of 6tjx by Molmil
Cryo-EM structure of TypeII tau filaments extracted from the brains of individuals with Corticobasal degeneration
分子名称: Microtubule-associated protein tau
著者Zhang, W, Murzin, A.G, Falcon, B, Shi, Y, Goedert, M, Scheres, S.H.W.
登録日2019-11-27
公開日2020-02-05
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Novel tau filament fold in corticobasal degeneration.
Nature, 580, 2020
6TN6
DownloadVisualize
BU of 6tn6 by Molmil
X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者da Silva, V.M, Squina, F.M, Sperenca, M, Martin, L, Muniz, J.R.C, Garcia, W, Nicolet, Y.
登録日2019-12-06
公開日2020-04-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献High-resolution structure of a modular hyperthermostable endo-beta-1,4-mannanase from Thermotoga petrophila: The ancillary immunoglobulin-like module is a thermostabilizing domain.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
6TSI
DownloadVisualize
BU of 6tsi by Molmil
cd1 nitrite reductase NirS with bound dihydro-heme d1
分子名称: CHLORIDE ION, HEME C, HEME D, ...
著者Kluenemann, T, Blankenfeldt, W.
登録日2019-12-20
公開日2020-11-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structure of heme d 1 -free cd 1 nitrite reductase NirS.
Acta Crystallogr.,Sect.F, 76, 2020
6L5A
DownloadVisualize
BU of 6l5a by Molmil
The structure of the UdgX mutant H109E at a pre-excision state
分子名称: GLYCEROL, IRON/SULFUR CLUSTER, Uracil DNA glycosylase superfamily protein
著者Xie, W, Tu, J, Zeng, H.
登録日2019-10-22
公開日2020-10-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.80007327 Å)
主引用文献Structural insights into an MsmUdgX mutant capable of both crosslinking and uracil excision capability.
DNA Repair (Amst), 97, 2021
6TRU
DownloadVisualize
BU of 6tru by Molmil
Crystal structure of the N-terminal half of the TFIIH subunit p52
分子名称: RNA polymerase II transcription factor B subunit 2
著者Koelmel, W, Kuper, J, Schoenwetter, E, Kisker, C.
登録日2019-12-19
公開日2020-10-21
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献How to limit the speed of a motor: the intricate regulation of the XPB ATPase and translocase in TFIIH.
Nucleic Acids Res., 48, 2020
6TTM
DownloadVisualize
BU of 6ttm by Molmil
Hyoscyamine 6-hydroxylase in complex with N-oxalylglycine and hyoscyamine
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Hyoscyamine 6 beta-hydroxylase, ...
著者Kluza, A, Kurpiewska, K, Mrugala, B, Porebski, P.J, Niedzialkowska, E, Minor, W, Borowski, T.
登録日2019-12-29
公開日2020-03-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Regioselectivity of hyoscyamine 6 beta-hydroxylase-catalysed hydroxylation as revealed by high-resolution structural information and QM/MM calculations.
Dalton Trans, 49, 2020
6TU9
DownloadVisualize
BU of 6tu9 by Molmil
The ROR1 Pseudokinase Domain Bound To Ponatinib
分子名称: 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide, Inactive tyrosine-protein kinase transmembrane receptor ROR1
著者Mathea, S, Preuss, F, Chatterjee, D, Niininen, W, Ungureanu, D, Shin, D, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S.
登録日2020-01-04
公開日2020-01-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural Insights into Pseudokinase Domains of Receptor Tyrosine Kinases.
Mol.Cell, 79, 2020
1A0S
DownloadVisualize
BU of 1a0s by Molmil
SUCROSE-SPECIFIC PORIN
分子名称: CALCIUM ION, SUCROSE-SPECIFIC PORIN
著者Diederichs, K, Welte, W.
登録日1997-12-07
公開日1998-06-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the sucrose-specific porin ScrY from Salmonella typhimurium and its complex with sucrose.
Nat.Struct.Biol., 5, 1998
6TV2
DownloadVisualize
BU of 6tv2 by Molmil
Heme d1 biosynthesis associated Protein NirF
分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, GLYCEROL, Protein NirF, ...
著者Kluenemann, T, Layer, G, Blankenfeldt, W.
登録日2020-01-08
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.561 Å)
主引用文献Crystal structure of NirF: insights into its role in heme d 1 biosynthesis.
Febs J., 288, 2021
6TYD
DownloadVisualize
BU of 6tyd by Molmil
Structure of human LDB1 in complex with SSBP2
分子名称: LIM domain-binding protein 1, Single-stranded DNA-binding protein 2
著者Wang, H, Wang, Z, Xu, W.
登録日2019-08-08
公開日2020-01-01
最終更新日2020-01-29
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Crystal structure of human LDB1 in complex with SSBP2.
Proc.Natl.Acad.Sci.USA, 117, 2020
1A0T
DownloadVisualize
BU of 1a0t by Molmil
SUCROSE-SPECIFIC PORIN, WITH BOUND SUCROSE MOLECULES
分子名称: CALCIUM ION, SUCROSE-SPECIFIC PORIN, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Diederichs, K, Welte, W.
登録日1997-12-08
公開日1998-03-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the sucrose-specific porin ScrY from Salmonella typhimurium and its complex with sucrose.
Nat.Struct.Biol., 5, 1998
6U4X
DownloadVisualize
BU of 6u4x by Molmil
Crystal structure of Equine Serum Albumin complex with ibuprofen
分子名称: IBUPROFEN, SULFATE ION, Serum albumin, ...
著者Czub, M.P, Handing, K.B, Venkataramany, B.S, Steen, E.H, Shabalin, I.G, Satchell, K.J, Joachimiak, A, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2019-08-26
公開日2019-09-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Albumin-Based Transport of Nonsteroidal Anti-Inflammatory Drugs in Mammalian Blood Plasma.
J.Med.Chem., 63, 2020
6U7Z
DownloadVisualize
BU of 6u7z by Molmil
RNA hairpin structure containing one TNA nucleotide as primer
分子名称: CYTIDINE-5'-MONOPHOSPHATE, RNA (5'-R(*CP*UP*AP*UP*GP*CP*CP*UP*GP*CP*UP*G)-3'), RNA (5'-R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*GP*CP*CP*GP*AP*AP*AP*GP*(TG))-3')
著者Szostak, J.W, Zhang, W.
登録日2019-09-03
公開日2020-12-09
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Structural interpretation of the effects of threo-nucleotides on nonenzymatic template-directed polymerization.
Nucleic Acids Res., 49, 2021
6UC4
DownloadVisualize
BU of 6uc4 by Molmil
Barbed end side of a cofilactin cluster
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Huehn, A.R, Bibeau, J.P, Schramm, A.C, Cao, W, De La Cruz, E.M, Sindelar, C.V.
登録日2019-09-13
公開日2020-01-01
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (9.2 Å)
主引用文献Structures of cofilin-induced structural changes reveal local and asymmetric perturbations of actin filaments.
Proc.Natl.Acad.Sci.USA, 117, 2020
6TV9
DownloadVisualize
BU of 6tv9 by Molmil
Heme d1 biosynthesis associated Protein NirF in complex with dihydro-heme d1
分子名称: HEME D, Protein NirF,Protein NirF
著者Kluenemann, T, Layer, G, Blankenfeldt, W.
登録日2020-01-09
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.893 Å)
主引用文献Crystal structure of NirF: insights into its role in heme d 1 biosynthesis.
Febs J., 288, 2021
6LOI
DownloadVisualize
BU of 6loi by Molmil
Crystal structure of Enterococcus faecalis Undecaprenyl pyrophosphate synthase(EfaUPPS)
分子名称: Isoprenyl transferase
著者Lin, W, Wang, C.Y, Li, W.J, Wang, F.L.
登録日2020-01-05
公開日2020-06-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献Investigations into the Antibacterial Mechanism of Action of Viridicatumtoxins.
Acs Infect Dis., 6, 2020
1A5I
DownloadVisualize
BU of 1a5i by Molmil
CATALYTIC DOMAIN OF VAMPIRE BAT (DESMODUS ROTUNDUS) SALIVA PLASMINOGEN ACTIVATOR IN COMPLEX WITH EGR-CMK (GLU-GLY-ARG CHLOROMETHYL KETONE)
分子名称: L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide, PLASMINOGEN ACTIVATOR
著者Renatus, M, Stubbs, M.T, Bode, W.
登録日1998-02-17
公開日1999-03-23
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Catalytic domain structure of vampire bat plasminogen activator: a molecular paradigm for proteolysis without activation cleavage.
Biochemistry, 36, 1997
1AQJ
DownloadVisualize
BU of 1aqj by Molmil
STRUCTURE OF ADENINE-N6-DNA-METHYLTRANSFERASE TAQI
分子名称: ADENINE-N6-DNA-METHYLTRANSFERASE TAQI, SINEFUNGIN
著者Schluckebier, G, Saenger, W.
登録日1996-07-25
公開日1997-02-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Differential binding of S-adenosylmethionine S-adenosylhomocysteine and Sinefungin to the adenine-specific DNA methyltransferase M.TaqI.
J.Mol.Biol., 265, 1997
7RTC
DownloadVisualize
BU of 7rtc by Molmil
Crystal structure of the ARM domain from Drosophila SARM1 in complex with NaMN
分子名称: NAD(+) hydrolase sarm1, NICOTINATE MONONUCLEOTIDE
著者Gu, W, Ve, T, Kobe, B.
登録日2021-08-13
公開日2021-09-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Nicotinic acid mononucleotide is an allosteric SARM1 inhibitor promoting axonal protection.
Exp Neurol, 345, 2021
5HCN
DownloadVisualize
BU of 5hcn by Molmil
GPN-loop GTPase Npa3 in complex with GMPPCP
分子名称: GLYCEROL, GPN-loop GTPase 1, LAURIC ACID, ...
著者Niesser, J, Wagner, F.R, Kostrewa, D, Muehlbacher, W, Cramer, P.
登録日2016-01-04
公開日2016-01-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly.
Mol.Cell.Biol., 36, 2015
5HCI
DownloadVisualize
BU of 5hci by Molmil
GPN-loop GTPase Npa3 in complex with GDP
分子名称: GLYCEROL, GPN-loop GTPase 1, GUANOSINE-5'-DIPHOSPHATE, ...
著者Niesser, J, Wagner, F.R, Kostrewa, D, Muehlbacher, W, Cramer, P.
登録日2016-01-04
公開日2016-01-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly.
Mol.Cell.Biol., 36, 2015
7RFR
DownloadVisualize
BU of 7rfr by Molmil
Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor
分子名称: (1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-(4-methoxy-1H-indole-2-carbonyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
著者Gajiwala, K.S, Ferre, R.A, Liu, W, Stewart, A.E.
登録日2021-07-14
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.626 Å)
主引用文献An oral SARS-CoV-2 M pro inhibitor clinical candidate for the treatment of COVID-19.
Science, 374, 2021
7RFU
DownloadVisualize
BU of 7rfu by Molmil
Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor
分子名称: (1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
著者Greasley, S.E, Ferre, R.A, Liu, W, Stewart, A.E.
登録日2021-07-14
公開日2021-11-10
最終更新日2022-01-05
実験手法X-RAY DIFFRACTION (2.498 Å)
主引用文献An oral SARS-CoV-2 M pro inhibitor clinical candidate for the treatment of COVID-19.
Science, 374, 2021
7RFW
DownloadVisualize
BU of 7rfw by Molmil
Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor
分子名称: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
著者Greasley, S.E, Ferre, R.A, Liu, W, Stewart, A.E.
登録日2021-07-14
公開日2021-11-10
最終更新日2022-01-05
実験手法X-RAY DIFFRACTION (1.729 Å)
主引用文献An oral SARS-CoV-2 M pro inhibitor clinical candidate for the treatment of COVID-19.
Science, 374, 2021

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon