Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12580 results

9G7H
DownloadVisualize
BU of 9g7h by Molmil
Human Sirt6 in complex with ADP-ribose and the inhibitor 2-Pr
Descriptor: 2,4-bis(oxidanylidene)-1-[2-oxidanylidene-2-[[(2S)-3-oxidanylidene-3-(propylamino)-2-[3-(3-pyridin-3-yl-1,2,4-oxadiazol-5-yl)propanoylamino]propyl]amino]ethyl]pyrimidine-5-carboxamide, NAD-dependent protein deacetylase sirtuin-6, SULFATE ION, ...
Authors:You, W, Steegborn, C.
Deposit date:2024-07-21
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Elucidating the Unconventional Binding Mode of a DNA-Encoded Library Hit Provides a Blueprint for Sirtuin 6 Inhibitor Development.
Chemmedchem, 2024
9CVG
DownloadVisualize
BU of 9cvg by Molmil
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
Descriptor: Capsid protein
Authors:Sun, C, Jiang, W.
Deposit date:2024-07-29
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:The 2.6 angstrom Structure of a Tulane Virus Variant with Minor Mutations Leading to Receptor Change.
Biomolecules, 14, 2024
9C9Y
DownloadVisualize
BU of 9c9y by Molmil
Human TOP3B-TDRD3 core complex in DNA pre-cleavage state
Descriptor: DNA (5'-D(P*AP*CP*TP*AP*AP*AP*AP*T)-3'), DNA topoisomerase 3-beta-1, MANGANESE (II) ION, ...
Authors:Yang, X, Chen, X, Yang, W, Pommier, Y.
Deposit date:2024-06-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics
To Be Published
9FCD
DownloadVisualize
BU of 9fcd by Molmil
CysG(N-16) in complex with SAH from Kitasatospora cystarginea
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CARBONATE ION, ...
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-15
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Deciphering the SAM- and Metal-Dependent Mechanism of O-Methyltransferases in Cystargolide and Belactosin Biosynthesis: A Structure-Activity Relationship Study.
J.Biol.Chem., 2024
8YQQ
DownloadVisualize
BU of 8yqq by Molmil
Structure of HKU1B RBD with TMPRSS2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, Transmembrane protease serine 2
Authors:Gao, X, Cui, S, Ding, W, Zhu, K, Shang, K, Zhu, H.
Deposit date:2024-03-19
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (3.95 Å)
Cite:Structural basis for the interaction between human coronavirus HKU1 spike receptor binding domain and its receptor TMPRSS2.
Cell Discov, 10, 2024
5LPE
DownloadVisualize
BU of 5lpe by Molmil
Kallikrein-related peptidase 10 complex with Zn2+
Descriptor: Kallikrein-10, SULFATE ION, ZINC ION
Authors:Goettig, P, Debela, M, Magdolen, V, Bode, W, Brandstetter, H.
Deposit date:2016-08-12
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis for the Zn2+ inhibition of the zymogen-like kallikrein-related peptidase 10.
Biol.Chem., 397, 2016
9FCQ
DownloadVisualize
BU of 9fcq by Molmil
CysG(N-16)-H122A mutant in complex with SAH from Kitasatospora cystarginea
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-15
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Deciphering the SAM- and Metal-Dependent Mechanism of O-Methyltransferases in Cystargolide and Belactosin Biosynthesis: A Structure-Activity Relationship Study.
J.Biol.Chem., 2024
8YOY
DownloadVisualize
BU of 8yoy by Molmil
Structure of HKU1A RBD with TMPRSS2
Descriptor: Spike protein S1, Transmembrane protease serine 2
Authors:Gao, X, Cui, S, Ding, W, Shang, K, Zhu, H, Zhu, K.
Deposit date:2024-03-14
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural basis for the interaction between human coronavirus HKU1 spike receptor binding domain and its receptor TMPRSS2.
Cell Discov, 10, 2024
9CVF
DownloadVisualize
BU of 9cvf by Molmil
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18
Descriptor: Capsid protein
Authors:Sun, C, Jiang, W.
Deposit date:2024-07-29
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The 2.6 angstrom Structure of a Tulane Virus Variant with Minor Mutations Leading to Receptor Change.
Biomolecules, 14, 2024
9FCL
DownloadVisualize
BU of 9fcl by Molmil
CysG(N-16) in complex with SAM from Kitasatospora cystarginea
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-15
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Deciphering the SAM- and Metal-Dependent Mechanism of O-Methyltransferases in Cystargolide and Belactosin Biosynthesis: A Structure-Activity Relationship Study.
J.Biol.Chem., 2024
9FCY
DownloadVisualize
BU of 9fcy by Molmil
CysG(N-16)-R21K mutant in complex with SAH from Kitasatospora cystarginea
Descriptor: ADENINE, CALCIUM ION, SAM-dependent methyltransferase
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-16
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Deciphering the SAM- and Metal-Dependent Mechanism of O-Methyltransferases in Cystargolide and Belactosin Biosynthesis: A Structure-Activity Relationship Study.
J.Biol.Chem., 2024
9FCU
DownloadVisualize
BU of 9fcu by Molmil
CysG(N-16)-H121A mutant in complex with SAH from Kitasatospora cystarginea
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-15
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Deciphering the SAM- and Metal-Dependent Mechanism of O-Methyltransferases in Cystargolide and Belactosin Biosynthesis: A Structure-Activity Relationship Study.
J.Biol.Chem., 2024
9B6G
DownloadVisualize
BU of 9b6g by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMTB
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, N-(3-aminopropyl)-2-[(3-methylphenyl)methoxy]-N-[(thiophen-2-yl)methyl]benzamide, ...
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6F
DownloadVisualize
BU of 9b6f by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMG2850
Descriptor: (8R)-8-[4-(trifluoromethyl)phenyl]-N-[(2S)-1,1,1-trifluoropropan-2-yl]-5,8-dihydro-1,7-naphthyridine-7(6H)-carboxamide, CHOLESTEROL HEMISUCCINATE, Transient receptor potential cation channel subfamily M member 8
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9CA0
DownloadVisualize
BU of 9ca0 by Molmil
Human TOP3B-TDRD3 core complex in DNA pre-cleavage state
Descriptor: DNA (5'-D(*AP*TP*T)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*AP*A)-3'), DNA topoisomerase 3-beta-1, ...
Authors:Yang, X, Chen, X, Yang, W, Pommier, Y.
Deposit date:2024-06-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics
To Be Published
9CVE
DownloadVisualize
BU of 9cve by Molmil
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Descriptor: Capsid protein
Authors:Sun, C, Jiang, W.
Deposit date:2024-07-29
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:The 2.6 angstrom Structure of a Tulane Virus Variant with Minor Mutations Leading to Receptor Change.
Biomolecules, 14, 2024
9B6K
DownloadVisualize
BU of 9b6k by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with Ca2+ in the absence of PI(4,5)P2
Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily M member 8
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (4.13 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6J
DownloadVisualize
BU of 9b6j by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with PI(4,5)P2 and Ca2+
Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily M member 8, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9GDK
DownloadVisualize
BU of 9gdk by Molmil
Jumonji domain-containing protein 1C with crystallization epitope mutations L2440Y:G2444H
Descriptor: Probable JmjC domain-containing histone demethylation protein 2C
Authors:Fairhead, M, Strain-Damerell, C, Ye, M, Mackinnon, S.R, Pinkas, D, MacLean, E.M, Koekemoer, L, Damerell, D, Krojer, T, Arrowsmith, C.H, Edwards, A, Bountra, C, Yue, W, Burgess-Brown, N, Marsden, B, von Delft, F, Structural Genomics Consortium (SGC)
Deposit date:2024-08-05
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants
To Be Published
9FD3
DownloadVisualize
BU of 9fd3 by Molmil
CysG(N-16)-D190N mutant in complex with SAH from Kitasatospora cystarginea
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-16
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Deciphering the SAM- and Metal-Dependent Mechanism of O-Methyltransferases in Cystargolide and Belactosin Biosynthesis: A Structure-Activity Relationship Study.
J.Biol.Chem., 2024
7O0Z
DownloadVisualize
BU of 7o0z by Molmil
ABC transporter NosFY, nucleotide-free in GDN
Descriptor: Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter permease protein NosY
Authors:Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
Deposit date:2021-03-28
Release date:2022-11-02
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
8YM1
DownloadVisualize
BU of 8ym1 by Molmil
Structure of SADS-CoV Virus Nucleocapsid Protein
Descriptor: nucleocapsid phosphoprotein
Authors:Zhang, Y, Wu, F, Xu, W.
Deposit date:2024-03-08
Release date:2024-07-24
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Unraveling the assembly mechanism of SADS-CoV virus nucleocapsid protein: insights from RNA binding, dimerization, and epitope diversity profiling.
J.Virol., 98, 2024
9GH3
DownloadVisualize
BU of 9gh3 by Molmil
pleckstrin homology domain interacting protein with crystallization epitope mutations L1408N:R1409E
Descriptor: 1,2-ETHANEDIOL, PH-interacting protein
Authors:Fairhead, M, Strain-Damerell, C, Ye, M, Mackinnon, S.R, Pinkas, D, MacLean, E.M, Koekemoer, L, Damerell, D, Krojer, T, Arrowsmith, C.H, Edwards, A, Yue, W, Burgess-Brown, N, Marsden, B, von Delft, F, Structural Genomics Consortium (SGC)
Deposit date:2024-08-14
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants
To Be Published
7O13
DownloadVisualize
BU of 7o13 by Molmil
ABC transporter NosDFY, nucleotide-free in lipid nanodisc
Descriptor: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
Authors:Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
Deposit date:2021-03-28
Release date:2022-11-02
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
9FSV
DownloadVisualize
BU of 9fsv by Molmil
Yeast 20S proteasome with human beta2i (1-53) in complex with epoxyketone inhibitor 42
Descriptor: (2S)-N-[(2S)-1-[[(1S)-2-cyclohexyl-1-[(2R,3S,6R,7S)-3-methanoyl-2,6-dimethyl-6,7-bis(oxidanyl)-1,4-oxazepan-7-yl]ethyl]amino]-3-(4-methoxyphenyl)-1-oxidanylidene-propan-2-yl]-2-(2-morpholin-4-ylethanoylamino)-4-oxidanyl-butanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Maurits, E, Huber, E.M, Dekker, P.M, Wang, X, Heinemeyer, W, Florea, B.I, Groll, M, Overkleeft, H.S.
Deposit date:2024-06-22
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure-based design of peptide epoxyketones selectively targeting the three human immunoproteasome active sites
to be published

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon