Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12521 件

6BL2
DownloadVisualize
BU of 6bl2 by Molmil
Novel Modes of Inhibition of Wild-Type IDH1: Direct Covalent Modification of His315 with Cmpd15
分子名称: 3-[(6aS,7S,9S,10aS)-9-cyano-7-methyl-8-oxo-2-(phenylamino)-6,6a,7,8,9,10-hexahydrobenzo[h]quinazolin-10a(5H)-yl]benzoic acid, CALCIUM ION, ISOCITRIC ACID, ...
著者Jakob, C.G, Qiu, W.
登録日2017-11-09
公開日2018-07-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Novel Modes of Inhibition of Wild-Type Isocitrate Dehydrogenase 1 (IDH1): Direct Covalent Modification of His315.
J. Med. Chem., 61, 2018
6BIG
DownloadVisualize
BU of 6big by Molmil
Crystal structure of cobalt-substituted Synechocystis ACO
分子名称: Apocarotenoid-15,15'-oxygenase, CHLORIDE ION, COBALT (II) ION
著者Sui, X, Shi, W, Kiser, P.D.
登録日2017-11-02
公開日2018-07-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Preparation and characterization of metal-substituted carotenoid cleavage oxygenases.
J. Biol. Inorg. Chem., 23, 2018
1ZGU
DownloadVisualize
BU of 1zgu by Molmil
Solution structure of the human Mms2-Ubiquitin complex
分子名称: Ubiquitin, Ubiquitin-conjugating enzyme E2 variant 2
著者Lewis, M.J, Saltibus, L.F, Hau, D.D, Xiao, W, Spyracopoulos, L.
登録日2005-04-22
公開日2006-04-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for Non-Covalent Interaction Between Ubiquitin and the Ubiquitin Conjugating Enzyme Variant Human MMS2.
J.Biomol.Nmr, 34, 2006
8K5Q
DownloadVisualize
BU of 8k5q by Molmil
Crystal structure of YajQ STM0435 with c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), YajQ
著者Dai, Y, Zhang, M, Wang, W, Li, B.
登録日2023-07-23
公開日2024-04-17
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献A c-di-GMP binding effector STM0435 modulates flagellar motility and pathogenicity in Salmonella
Virulence, 15, 2024
1NQW
DownloadVisualize
BU of 1nqw by Molmil
Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 5-(6-D-ribitylamino-2,4(1H,3H)pyrimidinedione-5-yl)-1-pentyl-phosphonic acid
分子名称: 5-(6-D-RIBITYLAMINO-2,4(1H,3H)PYRIMIDINEDIONE-5-YL) PENTYL-1-PHOSPHONIC ACID, 6,7-dimethyl-8-ribityllumazine synthase
著者Zhang, X, Meining, W, Cushman, M, Haase, I, Fischer, M, Bacher, A, Ladenstein, R.
登録日2003-01-23
公開日2004-01-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A structure-based model of the reaction catalyzed by lumazine synthase from Aquifex aeolicus.
J.Mol.Biol., 328, 2003
1LCS
DownloadVisualize
BU of 1lcs by Molmil
RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS
分子名称: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Barnett, A.L, Wensel, D.L, Li, W, Fass, D, Cunningham, J.M.
登録日2002-04-06
公開日2003-04-08
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure and Mechanism of a Coreceptor for Infection by a pathogenic feline retrovirus
J.Virol., 77, 2003
6BSJ
DownloadVisualize
BU of 6bsj by Molmil
Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis
分子名称: (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE, CALCIUM ION, DNA (5'-D(*GP*TP*AP*TP*GP*CP*CP*TP*AP*TP*AP*GP*TP*TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3'), ...
著者Tian, L, Kim, M, Yang, W.
登録日2017-12-03
公開日2018-01-03
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Structure of HIV-1 reverse transcriptase cleaving RNA in an RNA/DNA hybrid.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6C5Y
DownloadVisualize
BU of 6c5y by Molmil
Crystal structure of thaumatin from microcrystals
分子名称: Thaumatin-1
著者Guo, G, Fuchs, M, Shi, W, Skinner, J, Berman, E, Ogata, C.M, Hendrickson, W.A, McSweeney, S, Liu, Q.
登録日2018-01-17
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Sample manipulation and data assembly for robust microcrystal synchrotron crystallography.
IUCrJ, 5, 2018
1ZMH
DownloadVisualize
BU of 1zmh by Molmil
Crystal structure of human neutrophil peptide 2, HNP-2 (variant Gly16-> D-Ala)
分子名称: GLYCEROL, HEXAETHYLENE GLYCOL, Neutrophil defensin 2, ...
著者Lubkowski, J, Prahl, A, Lu, W.
登録日2005-05-10
公開日2005-08-16
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Reconstruction of the conserved beta-bulge in mammalian defensins using D-amino acids.
J.Biol.Chem., 280, 2005
8K4I
DownloadVisualize
BU of 8k4i by Molmil
Crystal structure of YajQ STM0435
分子名称: YajQ
著者Dai, Y, Zhang, M, Wang, W, Li, B.
登録日2023-07-19
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献A c-di-GMP binding effector STM0435 modulates flagellar motility and pathogenicity in Salmonella
Virulence, 15, 2024
6C7P
DownloadVisualize
BU of 6c7p by Molmil
Crystal structure of D477G ACO/RPE65 chimera, monoclinic crystal form
分子名称: Apocarotenoid-15,15'-oxygenase, FE (II) ION
著者Kiser, P.D, Shi, W.
登録日2018-01-23
公開日2018-04-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Insights into the pathogenesis of dominant retinitis pigmentosa associated with a D477G mutation in RPE65.
Hum.Mol.Genet., 27, 2018
1O7A
DownloadVisualize
BU of 1o7a by Molmil
Human beta-Hexosaminidase B
分子名称: 1,2-ETHANEDIOL, 2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Maier, T, Strater, N, Schuette, C, Klingenstein, R, Sandhoff, K, Saenger, W.
登録日2002-10-29
公開日2003-10-23
最終更新日2020-11-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The X-Ray Crystal Structure of Human Beta-Hexosaminidase B Provides New Insights Into Sandhoff Disease
J.Mol.Biol., 328, 2003
6CA0
DownloadVisualize
BU of 6ca0 by Molmil
Cryo-EM structure of E. coli RNAP sigma70 open complex
分子名称: DNA (35-MER), DNA (45-MER), DNA (5'-D(P*GP*CP*CP*GP*CP*GP*TP*CP*AP*GP*A)-3'), ...
著者Narayanan, A, Vago, F, Li, K, Qayyum, M.Z, Yernool, D, Jiang, W, Murakami, K.S.
登録日2018-01-29
公開日2018-02-28
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (5.75 Å)
主引用文献Cryo-EM structure ofEscherichia colisigma70RNA polymerase and promoter DNA complex revealed a role of sigma non-conserved region during the open complex formation.
J. Biol. Chem., 293, 2018
1Z2U
DownloadVisualize
BU of 1z2u by Molmil
The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance
分子名称: (R,R)-2,3-BUTANEDIOL, CHLORIDE ION, SODIUM ION, ...
著者Gavira, J.A, DiGiamamarino, E, Tempel, W, Liu, Z.J, Wang, B.C, Meehan, E, Ng, J.D, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2005-03-09
公開日2005-03-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance
To be published
1Z2Z
DownloadVisualize
BU of 1z2z by Molmil
Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1
分子名称: Probable tRNA pseudouridine synthase D
著者Forouhar, F, Yong, W, Ciano, M, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2005-03-10
公開日2005-04-26
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1
To be Published
6BUH
DownloadVisualize
BU of 6buh by Molmil
Crystal structure of a membrane protein, crystal form II
分子名称: D-alanyl carrier protein, D-alanyl transfer protein DltB
著者Ma, D, Wang, Z, Xu, W.
登録日2017-12-10
公開日2018-10-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Crystal structure of a membrane-bound O-acyltransferase.
Nature, 562, 2018
1NLZ
DownloadVisualize
BU of 1nlz by Molmil
Crystal structure of unliganded traffic ATPase of the type IV secretion system of helicobacter pylori
分子名称: virB11 homolog
著者Savvides, S.N, Yeo, H.J, Beck, M.R, Blaesing, F, Lurz, R, Lanka, E, Buhrdorf, R, Fischer, W, Haas, R, Waksman, G.
登録日2003-01-08
公開日2003-05-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion
Embo J., 22, 2003
1NNE
DownloadVisualize
BU of 1nne by Molmil
Crystal Structure of the MutS-ADPBeF3-DNA complex
分子名称: 1,2-ETHANEDIOL, 5'-D(*GP*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*TP*CP*GP*TP*C)-3', 5'-D(P*GP*GP*AP*CP*GP*AP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*GP*TP*CP*G)-3', ...
著者Alani, E, Lee, J.Y, Schofield, M.J, Kijas, A.W, Hsieh, P, Yang, W.
登録日2003-01-13
公開日2003-05-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Crystal structure and biochemical analysis of the MutS-ADP-Beryllium Fluoride complex suggests a conserved mechanism for ATP interactions in mismatch repair
J.Biol.Chem., 278, 2003
1ZBA
DownloadVisualize
BU of 1zba by Molmil
Foot-and-Mouth Disease virus serotype A1061 complexed with oligosaccharide receptor.
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Coat protein VP1, Coat protein VP2, ...
著者Fry, E.E, Newman, J.W, Curry, S, Najjam, S, Jackson, T, Blakemore, W, Lea, S.M, Miller, L, Burman, A, King, A.M, Stuart, D.I.
登録日2005-04-08
公開日2005-06-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of Foot-and-mouth disease virus serotype A1061 alone and complexed with oligosaccharide receptor: receptor conservation in the face of antigenic variation.
J.Gen.Virol., 86, 2005
6C8J
DownloadVisualize
BU of 6c8j by Molmil
RNA-activated 2-AIpG monomer complex, 15 min soaking
分子名称: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2018-01-24
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
1NQX
DownloadVisualize
BU of 1nqx by Molmil
Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 3-(7-hydroxy-8-ribityllumazine-6-yl)propionic acid
分子名称: 3-(7-HYDROXY-8-RIBITYLLUMAZINE-6-YL) PROPIONIC ACID, 6,7-dimethyl-8-ribityllumazine synthase, PHOSPHATE ION
著者Zhang, X, Meining, W, Cushman, M, Haase, I, Fischer, M, Bacher, A, Ladenstein, R.
登録日2003-01-23
公開日2004-01-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献A structure-based model of the reaction catalyzed by lumazine synthase from Aquifex aeolicus.
J.Mol.Biol., 328, 2003
6C8N
DownloadVisualize
BU of 6c8n by Molmil
RNA-activated 2-AIpG monomer complex, 2h soaking
分子名称: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, ...
著者Zhang, W, Szostak, J.W.
登録日2018-01-25
公開日2018-05-30
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
1NNQ
DownloadVisualize
BU of 1nnq by Molmil
rubrerythrin from Pyrococcus furiosus Pfu-1210814
分子名称: Rubrerythrin, ZINC ION
著者Liu, Z.-J, Tempel, W, Schubot, F.D, Shah, A, Arendall III, W.B, Rose, J.P, Richardson, D.C, Richardson, J.S, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2003-01-14
公開日2004-03-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin
Proteins, 57, 2004
3TA1
DownloadVisualize
BU of 3ta1 by Molmil
A. fulgidus GlnK3, MgADP complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, Nitrogen regulatory protein P-II (GlnB-3)
著者Maier, S, Schleberger, P, Lue, W, Wacker, T, Pflueger, T, Litz, C, Andrade, S.L.A.
登録日2011-08-03
公開日2011-10-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism of disruption of the Amt-GlnK complex by P(II)-mediated sensing of 2-oxoglutarate.
Plos One, 6, 2011
6C53
DownloadVisualize
BU of 6c53 by Molmil
Cryo-EM structure of the Type 1 pilus rod
分子名称: Type-1 fimbrial protein, A chain
著者Zheng, W, Wang, F, Luna-Rico, A, Francetic, O, Hultgren, S.J, Egelman, E.H.
登録日2018-01-13
公開日2018-01-31
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Functional role of the type 1 pilus rod structure in mediating host-pathogen interactions.
Elife, 7, 2018

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon