Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 34856 results

4RPN
DownloadVisualize
BU of 4rpn by Molmil
PcpR inducer binding domain complex with pentachlorophenol
Descriptor: PCP degradation transcriptional activation protein, PENTACHLOROPHENOL
Authors:Hayes, R.P, Moural, T.W, Lewis, K.M, Onofrei, D, Xun, L, Kang, C.
Deposit date:2014-10-30
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.272 Å)
Cite:Structures of the Inducer-Binding Domain of Pentachlorophenol-Degrading Gene Regulator PcpR from Sphingobium chlorophenolicum.
Int J Mol Sci, 15, 2014
5Z7J
DownloadVisualize
BU of 5z7j by Molmil
Crystal structure of a lactonase double mutant in complex with ligand l
Descriptor: (3S,7R,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one, DI(HYDROXYETHYL)ETHER, Lactonase for protein
Authors:Zheng, Y.Y, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2018-01-29
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal Structure of a Mycoestrogen-Detoxifying Lactonase from Rhinocladiella mackenziei: Molecular Insight into ZHD Substrate Selectivity
Acs Catalysis, 8, 2018
4RNS
DownloadVisualize
BU of 4rns by Molmil
PcpR inducer binding domain (apo-form)
Descriptor: PCP degradation transcriptional activation protein
Authors:Hayes, R.P, Moural, T.W, Lewis, K.M, Onofrei, D, Xun, L, Kang, C.
Deposit date:2014-10-25
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of the Inducer-Binding Domain of Pentachlorophenol-Degrading Gene Regulator PcpR from Sphingobium chlorophenolicum.
Int J Mol Sci, 15, 2014
6QAF
DownloadVisualize
BU of 6qaf by Molmil
Crystal structure of human Arginase-1 at pH 9.0 in complex with CB-1158/INCB001158
Descriptor: Arginase-1, MANGANESE (II) ION, SODIUM ION, ...
Authors:Grobben, Y, Uitdehaag, J.C.M, Tabak, W.W.A, Zaman, G.J.R.
Deposit date:2018-12-19
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structural insights into human Arginase-1 pH dependence and its inhibition by the small molecule inhibitor CB-1158.
J Struct Biol X, 4, 2020
4RPO
DownloadVisualize
BU of 4rpo by Molmil
PcpR inducer binding domain (Complex with 2,4,6-trichlorophenol)
Descriptor: 2,4,6-trichlorophenol, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Hayes, R.P, Moural, T.W, Lewis, K.M, Onofrei, D, Xun, L, Kang, C.
Deposit date:2014-10-30
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structures of the Inducer-Binding Domain of Pentachlorophenol-Degrading Gene Regulator PcpR from Sphingobium chlorophenolicum.
Int J Mol Sci, 15, 2014
8OKI
DownloadVisualize
BU of 8oki by Molmil
Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5
Descriptor: DNA Non-Template Strand, DNA Template Strand, DNA-directed RNA polymerase subunit Rpo10, ...
Authors:Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D.
Deposit date:2023-03-28
Release date:2024-04-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment.
Nucleic Acids Res., 52, 2024
8WPV
DownloadVisualize
BU of 8wpv by Molmil
Truncated mutant (1-171) of ferritin from Ureaplasma diversum soaked in Fe2+ solution for 30min
Descriptor: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ...
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-10-10
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
5OAL
DownloadVisualize
BU of 5oal by Molmil
Crystal structure of mutant AChBP in complex with strychnine (T53F, Q74R, Y110A, I135S, G162E)
Descriptor: ARGININE, STRYCHNINE, Soluble acetylcholine receptor
Authors:Dawson, A, Hunter, W.N, de Souza, J.O, Trumper, P.
Deposit date:2017-06-22
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Engineering a surrogate human heteromeric alpha / beta glycine receptor orthosteric site exploiting the structural homology and stability of acetylcholine-binding protein.
Iucrj, 6, 2019
8WPT
DownloadVisualize
BU of 8wpt by Molmil
Truncated mutant (1-171) of ferritin from Ureaplasma diversum
Descriptor: CHLORIDE ION, FE (III) ION, Truncated ferritin
Authors:Wang, W.M, Xi, H.F, Gong, W.J, Ma, D.Y, Wang, H.F.
Deposit date:2023-10-10
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
J.Am.Chem.Soc., 146, 2024
5OBH
DownloadVisualize
BU of 5obh by Molmil
Crystal structure of glycine binding protein in complex with bicuculline
Descriptor: (5S)-6,6-dimethyl-5-[(6R)-8-oxo-6,8-dihydrofuro[3,4-e][1,3]benzodioxol-6-yl]-5,6,7,8-tetrahydro[1,3]dioxolo[4,5-g]isoquinolin-6-ium, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Dawson, A, Hunter, W.N, Jones, M.
Deposit date:2017-06-27
Release date:2018-08-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Structural Rationale for N-Methylbicuculline Acting as a Promiscuous Competitive Antagonist of Inhibitory Pentameric Ligand-Gated Ion Channels.
Chembiochem, 21, 2020
8OUG
DownloadVisualize
BU of 8oug by Molmil
Exo-beta-d-glucosaminidase from Pyrococcus chitonophagus
Descriptor: 1,2-ETHANEDIOL, Beta-galactosidase, CHLORIDE ION
Authors:Rypniewski, W, Biniek-Antosiak, K, Bejger, M.
Deposit date:2023-04-22
Release date:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Exo-beta-d-glucosaminidase from Pyrococcus chitonophagus
To Be Published
7TBJ
DownloadVisualize
BU of 7tbj by Molmil
Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC
Descriptor: NUP107 CTD, NUP107 NTD, NUP133, ...
Authors:Petrovic, S, Samanta, D, Perriches, T, Bley, C.J, Thierbach, K, Brown, B, Nie, S, Mobbs, G.W, Stevens, T.A, Liu, X, Tomaleri, G.P, Schaus, L, Hoelz, A.
Deposit date:2021-12-22
Release date:2022-06-22
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (23 Å)
Cite:Architecture of the linker-scaffold in the nuclear pore.
Science, 376, 2022
2L56
DownloadVisualize
BU of 2l56 by Molmil
NMR structure of the GCN4 trigger peptide refined using biased molecular dynamics simulations
Descriptor: General control protein GCN4
Authors:Missimer, J.H, Dolenc, J, Steinmetz, M.O, van Gunsteren, W.F.
Deposit date:2010-10-26
Release date:2010-12-01
Last modified:2011-10-26
Method:SOLUTION NMR
Cite:Exploring the trigger sequence of the GCN4 coiled-coil: Biased molecular dynamics resolves apparent inconsistencies in NMR measurements
Protein Sci., 19, 2010
6QH4
DownloadVisualize
BU of 6qh4 by Molmil
Crystal structure of human Methylmalonyl-CoA epimerase (MCEE) p.Arg143Cys variant
Descriptor: COBALT (II) ION, Methylmalonyl-CoA epimerase, mitochondrial
Authors:Bailey, H.J, Chaikuid, A, Krysztofinska, E, Froese, D.S, Sorrell, F.J, Diaz-Saez, L, Kennedy, E, Edwards, A.M, Bountra, C, Yue, W.W.
Deposit date:2019-01-15
Release date:2019-02-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:Crystal structure of human Methylmalonyl-CoA epimerase (MCEE) p.Arg143Cys variant
To Be Published
4TT8
DownloadVisualize
BU of 4tt8 by Molmil
Crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase (wild-type) complex with 10-formyl-5,8-dideazafolate
Descriptor: 10-formyltetrahydrofolate dehydrogenase, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, N-(4-{[(2-amino-4-hydroxyquinazolin-6-yl)methyl](formyl)amino}benzoyl)-L-glutamic acid
Authors:Lin, C.C, Chen, C.J, Fu, T.F, Chuankhayan, P, Kao, T.T, Chang, W.N.
Deposit date:2014-06-20
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structures of the hydrolase domain of zebrafish 10-formyltetrahydrofolate dehydrogenase and its complexes reveal a complete set of key residues for hydrolysis and product inhibition.
Acta Crystallogr.,Sect.D, 71, 2015
4TU4
DownloadVisualize
BU of 4tu4 by Molmil
Crystal structure of ATAD2A bromodomain complexed with 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(phenylsulfonyl)amino]benzoicacid
Descriptor: 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(phenylsulfonyl)amino]benzoic acid, ATPase family AAA domain-containing protein 2, CHLORIDE ION, ...
Authors:Poncet-Montange, G, Zhan, Y, Bardenhagen, J, Petrocchi, A, Leo, E, Shi, X, Lee, G, Leonard, P, Geck Do, M, Cardozo, M, Palmer, W, Andersen, J, Jones, P, Ladbury, J.
Deposit date:2014-06-23
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Observed bromodomain flexibility reveals histone peptide- and small molecule ligand-compatible forms of ATAD2.
Biochem.J., 466, 2015
4RO3
DownloadVisualize
BU of 4ro3 by Molmil
1.8 Angstrom Crystal Structure of the N-terminal Domain of Protein with Unknown Function from Vibrio cholerae.
Descriptor: Hypothetical Protein, SULFATE ION
Authors:Minasov, G, Wawrzak, Z, Stogios, P.J, Skarina, T, Seed, K.D, Yim, V, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-10-27
Release date:2014-12-03
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.8 Angstrom Crystal Structure of the N-terminal Domain of Protein with Unknown Function from Vibrio cholerae.
To be Published
6Z2J
DownloadVisualize
BU of 6z2j by Molmil
The structure of the dimeric HDAC1/MIDEAS/DNTTIP1 MiDAC deacetylase complex
Descriptor: Deoxynucleotidyltransferase terminal-interacting protein 1, Histone deacetylase 1, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Fairall, L, Saleh, A, Ragan, T.J, Millard, C.J, Savva, C.G, Schwabe, J.W.R.
Deposit date:2020-05-16
Release date:2020-07-08
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4 Å)
Cite:The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure.
Nat Commun, 11, 2020
4WH0
DownloadVisualize
BU of 4wh0 by Molmil
YcaC from Pseudomonas aeruginosa with S-mercaptocysteine active site cysteine
Descriptor: CHLORIDE ION, Putative hydrolase
Authors:Groftehauge, M.K, Truan, D, Vasil, A, Denny, P.W, Vasil, M.L, Pohl, E.
Deposit date:2014-09-19
Release date:2015-07-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.563 Å)
Cite:Crystal Structure of a Hidden Protein, YcaC, a Putative Cysteine Hydrolase from Pseudomonas aeruginosa, with and without an Acrylamide Adduct.
Int J Mol Sci, 16, 2015
4RSK
DownloadVisualize
BU of 4rsk by Molmil
STRUCTURE OF THE K7A/R10A/K66A VARIANT OF RIBONUCLEASE A COMPLEXED WITH 3'-UMP
Descriptor: 3'-URIDINEMONOPHOSPHATE, RIBONUCLEASE A
Authors:Schultz, L.W, Fisher, B.M, Raines, R.T.
Deposit date:1998-04-09
Release date:1998-12-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Coulombic Effects of Remote Subsites on the Active Site of Ribonuclease A
Biochemistry, 37, 1998
4RN1
DownloadVisualize
BU of 4rn1 by Molmil
Crystal structure of S39D HDAC8 in complex with a largazole analogue.
Descriptor: (5R,8S,11S)-5-methyl-8-(propan-2-yl)-11-[(1E)-4-sulfanylbut-1-en-1-yl]-3-thia-7,10,14,20,21-pentaazatricyclo[14.3.1.1~2,5~]henicosa-1(20),2(21),16,18-tetraene-6,9,13-trione, GLYCEROL, Histone deacetylase 8, ...
Authors:Decroos, C, Christianson, D.W.
Deposit date:2014-10-22
Release date:2015-04-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Variable Active Site Loop Conformations Accommodate the Binding of Macrocyclic Largazole Analogues to HDAC8.
Biochemistry, 54, 2015
4RSN
DownloadVisualize
BU of 4rsn by Molmil
Crystal structure of the E267V mutant of cytochrome P450 BM3
Descriptor: Bifunctional P-450/NADPH-P450 reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhou, W.H, Zhang, A.L, Zhang, T, Ren, X.K, Yorke, J.A, Taylor, A, Wong, L.-L.
Deposit date:2014-11-09
Release date:2015-12-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Expanding the drug metabolism function of P450BM3
To be Published
2WH5
DownloadVisualize
BU of 2wh5 by Molmil
Crystal structure of human acyl-CoA binding domain 4 complexed with stearoyl-CoA
Descriptor: ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 4, COENZYME A, STEARIC ACID, ...
Authors:Yue, W.W, Shafqat, N, Ugochukwu, E, Savitsky, P, Johansson, C, Salah, E, Roos, A.K, Chaikuad, A, von Delft, F, Arrowsmith, C, Weigelt, J, Edwards, A, Bountra, C, Oppermann, U.
Deposit date:2009-04-30
Release date:2009-07-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human Acyl-Coa Binding Domain 4
To be Published
4RV4
DownloadVisualize
BU of 4rv4 by Molmil
2.65 Angstrom Resolution Crystal Structure of an orotate phosphoribosyltransferase from Bacillus anthracis str. 'Ames Ancestor' in complex with 5-phospho-alpha-D-ribosyl diphosphate (PRPP)
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, DI(HYDROXYETHYL)ETHER, Orotate phosphoribosyltransferase
Authors:Halavaty, A.S, Minasov, G, Shuvalova, L, Winsor, J, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-11-24
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:2.65 Angstrom resolution crystal structure of an orotate phosphoribosyltransferase from Bacillus anthracis str. 'Ames Ancestor' in complex with 5-phospho-alpha-D-ribosyl diphosphate (PRPP)
To be Published
5OG9
DownloadVisualize
BU of 5og9 by Molmil
The BM3 mutant WIFI-WC heme domain in complex with testosterone
Descriptor: Bifunctional cytochrome P450/NADPH--P450 reductase, CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gamble, C, Munro, A.W, Leys, D.
Deposit date:2017-07-12
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Regio- and diastereoselective hydroxylation of steroids using P450-BM3: Readdressing the numbers problem in directed evolution
To Be Published

226414

数据于2024-10-23公开中

PDB statisticsPDBj update infoContact PDBjnumon