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PDB: 34877 results

4CSU
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BU of 4csu by Molmil
Cryo-EM structures of the 50S ribosome subunit bound with ObgE
Descriptor: 23S RRNA, 50S RIBOSOMAL PROTEIN L1, 50S RIBOSOMAL PROTEIN L11, ...
Authors:Feng, B, Mandava, C.S, Guo, Q, Wang, J, Cao, W, Li, N, Zhang, Y, Zhang, Y, Wang, Z, Wu, J, Sanyal, S, Lei, J, Gao, N.
Deposit date:2014-03-10
Release date:2014-06-04
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Structural and Functional Insights Into the Mode of Action of a Universally Conserved Obg Gtpase.
Plos Biol., 12, 2014
3TG7
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BU of 3tg7 by Molmil
Crystal structure of Adenovirus serotype 5 hexon at 1.6A resolution
Descriptor: Hexon protein
Authors:Zhu, Y, Roszak, A.W, Isaacs, N.W, McVey, J.H, Nicklin, S.A, Baker, A.H.
Deposit date:2011-08-17
Release date:2011-11-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:crystal structure of Adenovirus serotype 5 hexon at 1.6A resolution
To be Published
8G13
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BU of 8g13 by Molmil
CryoEM structure of cytosolic GAPDH under 8h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G12
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BU of 8g12 by Molmil
CryoEM structure of nuclear GAPDH under 8h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.17 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G15
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BU of 8g15 by Molmil
CryoEM structure of nuclear GAPDH under 24h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.07 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
1FPD
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BU of 1fpd by Molmil
STRUCTURAL ASPECTS OF THE ALLOSTERIC INHIBITION OF FRUCTOSE-1,6-BISPHOSPHATASE BY AMP: THE BINDING OF BOTH THE SUBSTRATE ANALOGUE 2,5-ANHYDRO-D-GLUCITOL-1,6-BISPHOSPHATE AND CATALYTIC METAL IONS MONITORED BY X-RAY CRYSTALLOGRAPHY
Descriptor: 2,5-anhydro-1,6-di-O-phosphono-D-glucitol, ADENOSINE MONOPHOSPHATE, FRUCTOSE 1,6-BISPHOSPHATASE, ...
Authors:Villeret, V, Huang, S, Zhang, Y, Lipscomb, W.N.
Deposit date:1994-12-15
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural aspects of the allosteric inhibition of fructose-1,6-bisphosphatase by AMP: the binding of both the substrate analogue 2,5-anhydro-D-glucitol 1,6-bisphosphate and catalytic metal ions monitored by X-ray crystallography.
Biochemistry, 34, 1995
2OB7
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BU of 2ob7 by Molmil
Structure of tmRNA-(SmpB)2 complex as inferred from cryo-EM
Descriptor: 16S ribosomal RNA, SsrA-binding protein, transfer-messenger RNA
Authors:Frank, J, Felden, B, Gillet, R, Li, W.
Deposit date:2006-12-18
Release date:2007-01-23
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.
J.Biol.Chem., 282, 2007
4D0T
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BU of 4d0t by Molmil
GalNAc-T2 crystal soaked with UDP-GalNAc, EA2 peptide and manganese
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose, MANGANESE (II) ION, ...
Authors:Lira-Navarrete, E, Iglesias-Fernandez, J, Zandberg, W.F, Companon, I, Kong, Y, Corzana, F, Pinto, B.M, Clausen, H, Peregrina, J.M, Vocadlo, D, Rovira, C, Hurtado-Guerrero, R.
Deposit date:2014-04-30
Release date:2014-05-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N-Acetylgalactosaminyltransferase 2.
Angew.Chem.Int.Ed.Engl., 53, 2014
3MW1
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BU of 3mw1 by Molmil
p38 kinase Crystal structure in complex with small molecule inhibitor
Descriptor: 8-(2,6-dichlorophenyl)-4-(2,4-difluorophenyl)-2-piperidin-4-yl-1,7-naphthyridine 7-oxide, Mitogen-activated protein kinase 14
Authors:Segarra, V, Caturla, F, Lumeras, W, Roca, R, Fisher, M, Lamers, M.
Deposit date:2010-05-05
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:1,7-Naphthyridine 1-Oxides as Novel Potent and Selective Inhibitors of p38 Mitogen Activated Protein Kinase
J.Med.Chem., 54, 2011
3TFH
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BU of 3tfh by Molmil
DMSP-dependent demethylase from P. ubique - apo
Descriptor: GLYCEROL, GcvT-like Aminomethyltransferase protein, SODIUM ION
Authors:Schuller, D.J, Reisch, C.R, Moran, M.A, Whitman, W.B, Lanzilotta, W.N.
Deposit date:2011-08-15
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique.
Protein Sci., 21, 2012
7KRW
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BU of 7krw by Molmil
Stimulating state of near full-length Hsp70 DnaK fused with a substrate peptide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-11-20
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (7.7 Å)
Cite:Conformational equilibria in allosteric control of Hsp70 chaperones.
Mol.Cell, 81, 2021
8G9F
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BU of 8g9f by Molmil
Complete auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase
Descriptor: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase, ...
Authors:Mullins, E.A, Chazin, W.J, Eichman, B.F.
Deposit date:2023-02-21
Release date:2023-04-12
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
7KO2
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BU of 7ko2 by Molmil
Restraining state of near full-length Hsp70 DnaK
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, MAGNESIUM ION, ...
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-11-06
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Conformational equilibria in allosteric control of Hsp70 chaperones.
Mol.Cell, 81, 2021
8G9L
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BU of 8g9l by Molmil
DNA initiation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA primase large subunit, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-02-21
Release date:2023-04-12
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
7KRU
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BU of 7kru by Molmil
Stimulating state of a truncated Hsp70 DnaK fused with a substrate peptide
Descriptor: 1,3-PROPANDIOL, ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide, ...
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-11-20
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Conformational equilibria in allosteric control of Hsp70 chaperones.
Mol.Cell, 81, 2021
3TFJ
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BU of 3tfj by Molmil
DMSP-dependent demethylase from P. ubique - with cofactor THF
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, ACETATE ION, GLYCEROL, ...
Authors:Schuller, D.J, Reisch, C.R, Moran, M.A, Whitman, W.B, Lanzilotta, W.N.
Deposit date:2011-08-15
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique.
Protein Sci., 21, 2012
3MYG
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BU of 3myg by Molmil
Aurora A Kinase complexed with SCH 1473759
Descriptor: 2-{ethyl[(5-{[6-methyl-3-(1H-pyrazol-4-yl)imidazo[1,2-a]pyrazin-8-yl]amino}isothiazol-3-yl)methyl]amino}-2-methylpropan-1-ol, Serine/threonine-protein kinase 6, TETRAETHYLENE GLYCOL
Authors:Hruza, A, Prosis, W, Ramanathan, L.
Deposit date:2010-05-10
Release date:2010-07-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of a Potent, Injectable Inhibitor of Aurora Kinases Based on the Imidazo-[1,2-a]-Pyrazine Core.
ACS Med Chem Lett, 1, 2010
7KRV
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BU of 7krv by Molmil
Stimulating state of disulfide-bridged Hsp70 DnaK
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide, MAGNESIUM ION, ...
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-11-20
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Conformational equilibria in allosteric control of Hsp70 chaperones.
Mol.Cell, 81, 2021
8SGA
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BU of 8sga by Molmil
Crystal structure of 770E11, a monoclonal antibody isolated from a human Epstein-Barr virus seropositive donor
Descriptor: 770E11 Fab heavy chain, 770E11 Fab light chain, GLYCEROL, ...
Authors:Chen, W.H, Jensen, J.L, Joyce, M.G.
Deposit date:2023-04-12
Release date:2024-04-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of 770E11, a monoclonal antibody isolated from a human Epstein-Barr virus seropositive donor
To Be Published
7KRT
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BU of 7krt by Molmil
Restraining state of a truncated Hsp70 DnaK
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, MAGNESIUM ION
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-11-20
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Conformational equilibria in allosteric control of Hsp70 chaperones.
Mol.Cell, 81, 2021
8PDH
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BU of 8pdh by Molmil
The phosphatase and C2 domains of SHIP1 with covalent Z1742148362
Descriptor: (5-phenyl-1,3,4-oxadiazol-2-yl)methanimine, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Bradshaw, W.J, Moreira, T, Pascoa, T.C, Bountra, C, Chalk, R, von Delft, F, Brennan, P.E, Gileadi, O.
Deposit date:2023-06-12
Release date:2023-06-28
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2.
Structure, 32, 2024
4CQW
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BU of 4cqw by Molmil
H5 (tyTy) Del133/Ile155Thr Mutant Haemagglutinin in Complex with Avian Receptor Analogue 3'SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HAEMAGGLUTININ HA1, HAEMAGGLUTININ HA2, ...
Authors:Xiong, X, Xiao, H, Martin, S.R, Coombs, P.J, Liu, J, Collins, P.J, Vachieri, S.G, Walker, P.A, Lin, Y.P, McCauley, J.W, Gamblin, S.J, Skehel, J.J.
Deposit date:2014-02-21
Release date:2014-05-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enhanced Human Receptor Binding by H5 Haemagglutinins.
Virology, 456, 2014
6DKD
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BU of 6dkd by Molmil
Yeast Ddi2 Cyanamide Hydratase
Descriptor: DNA damage-inducible protein, SULFATE ION, ZINC ION
Authors:Moore, S.A, Xiao, W, Li, J.
Deposit date:2018-05-29
Release date:2019-05-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of Ddi2, a highly inducible detoxifying metalloenzyme fromSaccharomyces cerevisiae.
J.Biol.Chem., 294, 2019
8PDJ
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BU of 8pdj by Molmil
The phosphatase and C2 domains of SHIP1 with covalent Z56948267
Descriptor: 4-azanyl-3-fluoranyl-benzenethiol, DIMETHYL SULFOXIDE, Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1
Authors:Bradshaw, W.J, Moreira, T, Pascoa, T.C, Bountra, C, Chalk, R, von Delft, F, Brennan, P.E, Gileadi, O.
Deposit date:2023-06-12
Release date:2023-06-28
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2.
Structure, 32, 2024
8T76
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BU of 8t76 by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-19
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024

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