Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 34568 件

2ANT
DownloadVisualize
BU of 2ant by Molmil
THE 2.6 A STRUCTURE OF ANTITHROMBIN INDICATES A CONFORMATIONAL CHANGE AT THE HEPARIN BINDING SITE
分子名称: 2-acetamido-2-deoxy-beta-D-allopyranose, ANTITHROMBIN
著者Skinner, R, Abrahams, J.-P, Whisstock, J.C, Lesk, A.M, Carrell, R.W, Wardell, M.R.
登録日1997-01-28
公開日1997-06-16
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The 2.6 A structure of antithrombin indicates a conformational change at the heparin binding site.
J.Mol.Biol., 266, 1997
4BJ3
DownloadVisualize
BU of 4bj3 by Molmil
Integrin alpha2 I domain E318W-collagen complex
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GFOGER PEPTIDE, ...
著者Carafoli, F, Hamaia, S.W, Bihan, D, Hohenester, E, Farndale, R.W.
登録日2013-04-16
公開日2013-11-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.042 Å)
主引用文献An Activating Mutation Reveals a Second Binding Mode of the Integrin Alpha2 I Domain to the Gfoger Motif in Collagens.
Plos One, 8, 2013
7VQ6
DownloadVisualize
BU of 7vq6 by Molmil
Structure of a specialized glyoxalase from Gossypium hirsutum
分子名称: Lactoylglutathione lyase, NICKEL (II) ION
著者Li, H, Hu, Y.M, Dai, L.H, Chen, C.C, Huang, J.W, Liu, W.D, Guo, R.T.
登録日2021-10-19
公開日2022-07-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Crystal structure and biochemical analysis of the specialized deoxynivalenol-detoxifying glyoxalase SPG from Gossypium hirsutum.
Int.J.Biol.Macromol., 200, 2022
5MLF
DownloadVisualize
BU of 5mlf by Molmil
Structure of Psb29 at 1.55A
分子名称: MERCURY (II) ION, Protein Thf1
著者Murray, J.W, Kozlo, A.
登録日2016-12-06
公開日2017-08-23
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.637 Å)
主引用文献Structure of Psb29/Thf1 and its association with the FtsH protease complex involved in photosystem II repair in cyanobacteria.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 372, 2017
4GKK
DownloadVisualize
BU of 4gkk by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Cantara, W.A, Murphy IV, F.V, Spears, J.L, Demirci, H, Agris, P.F.
登録日2012-08-11
公開日2013-06-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013
2ART
DownloadVisualize
BU of 2art by Molmil
Crystal structure of lipoate-protein ligase A bound with lipoyl-AMP
分子名称: ADENOSINE MONOPHOSPHATE, LIPOIC ACID, Lipoate-protein ligase A, ...
著者Kim, D.J, Kim, K.H, Lee, H.H, Lee, S.J, Ha, J.Y, Yoon, H.J, Suh, S.W.
登録日2005-08-22
公開日2005-10-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of lipoate-protein ligase A bound with the activated intermediate: insights into interaction with lipoyl domains
J.Biol.Chem., 280, 2005
2HF6
DownloadVisualize
BU of 2hf6 by Molmil
Solution structure of human zeta-COP
分子名称: Coatomer subunit zeta-1
著者Yu, W, Jin, C, Xia, B.
登録日2006-06-23
公開日2007-06-12
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of human zeta-COP: direct evidences for structural similarity between COP I and clathrin-adaptor coats
J.Mol.Biol., 386, 2009
4YQP
DownloadVisualize
BU of 4yqp by Molmil
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
分子名称: 6-{[2-(morpholin-4-yl)benzyl]amino}pyridine-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
著者Elkins, P.A, Bonnette, W.G, Madauss, K.P.
登録日2015-03-13
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To Be Published
4YJI
DownloadVisualize
BU of 4yji by Molmil
The Crystal Structure of a Bacterial Aryl Acylamidase Belonging to the Amidase signature (AS) enzymes family
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Aryl acylamidase, N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL)
著者Choi, I.-G, Lee, S, Park, E.-H, Ko, H.-J, Bang, W.-G.
登録日2015-03-03
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure analysis of a bacterial aryl acylamidase belonging to the amidase signature enzyme family
Biochem.Biophys.Res.Commun., 467, 2015
4GNJ
DownloadVisualize
BU of 4gnj by Molmil
Crystal Structure Analysis of Leishmania siamensis Triosephosphate Isomerase
分子名称: ARSENIC, SODIUM ION, Triosephosphate isomerase
著者Kuaprasert, B, Riangrungroj, P, Pornthanakasem, W, Suginta, W, Mungthin, M, Leelayoova, S, Leartsakulpanich, U.
登録日2012-08-17
公開日2013-09-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal Structure Analysis of Leishmania siamensis Triosephosphate Isomerase
To be Published
5MKX
DownloadVisualize
BU of 5mkx by Molmil
1.68A STRUCTURE PCAF BROMODOMAIN WITH 4-chloro-2-methyl-5-(methylamino)pyridazin-3(2H)-one
分子名称: 1,4-BUTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-chloranyl-2-methyl-5-(methylamino)pyridazin-3-one, ...
著者Chung, C.-W.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Discovery of a Potent, Cell Penetrant, and Selective p300/CBP-Associated Factor (PCAF)/General Control Nonderepressible 5 (GCN5) Bromodomain Chemical Probe.
J. Med. Chem., 60, 2017
4YUH
DownloadVisualize
BU of 4yuh by Molmil
Multiconformer synchrotron model of CypA at 150 K
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Keedy, D.A, Kenner, L.R, Warkentin, M, Woldeyes, R.A, Thompson, M.C, Brewster, A.S, Van Benschoten, A.H, Baxter, E.L, Hopkins, J.B, Uervirojnangkoorn, M, McPhillips, S.E, Song, J, Mori, R.A, Holton, J.M, Weis, W.I, Brunger, A.T, Soltis, M, Lemke, H, Gonzalez, A, Sauter, N.K, Cohen, A.E, van den Bedem, H, Thorne, R.E, Fraser, J.S.
登録日2015-03-18
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.
Elife, 4, 2015
4E59
DownloadVisualize
BU of 4e59 by Molmil
Crystal structure of GCCGCCGC duplex
分子名称: RNA duplex containing CCG repeats
著者Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
登録日2012-03-14
公開日2012-12-12
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Crystallographic characterization of CCG repeats.
Nucleic Acids Res., 40, 2012
6N29
DownloadVisualize
BU of 6n29 by Molmil
Crystal structure of monomeric von Willebrand Factor D`D3 assembly
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Dong, X, Arndt, J.W, Springer, T.A.
登録日2018-11-12
公開日2019-01-23
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The von Willebrand factor D'D3 assembly and structural principles for factor VIII binding and concatemer biogenesis.
Blood, 133, 2019
1ZIX
DownloadVisualize
BU of 1zix by Molmil
Crystal Structure Analysis of the dienelactone hydrolase mutant (E36D, R105H, C123S, G211D, K234N)- 1.8 A
分子名称: Carboxymethylenebutenolidase, GLYCEROL
著者Kim, H.-K, Liu, J.-W, Carr, P.D, Ollis, D.L.
登録日2005-04-27
公開日2005-07-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase.
Acta Crystallogr.,Sect.D, 61, 2005
5MKY
DownloadVisualize
BU of 5mky by Molmil
BROMODOMAIN OF HUMAN BRD9 WITH 4-chloro-2-methyl-5-((2-methyl-1,2,3,4-tetrahydroisoquinolin-5-yl)amino)pyridazin-3(2H)-one
分子名称: 4-chloranyl-2-methyl-5-[(2-methyl-3,4-dihydro-1~{H}-isoquinolin-5-yl)amino]pyridazin-3-one, Bromodomain-containing protein 9
著者Chung, C.-W.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Discovery of a Potent, Cell Penetrant, and Selective p300/CBP-Associated Factor (PCAF)/General Control Nonderepressible 5 (GCN5) Bromodomain Chemical Probe.
J. Med. Chem., 60, 2017
4EA9
DownloadVisualize
BU of 4ea9 by Molmil
X-ray structure of GDP-perosamine N-acetyltransferase in complex with transition state analog at 0.9 Angstrom resolution
分子名称: CHLORIDE ION, GDP-N-acetylperosamine-coenzyme A, Perosamine N-acetyltransferase
著者Thoden, J.B, Reinhardt, L.A, Cook, P.D, Menden, P, Cleland, W.W, Holden, H.M.
登録日2012-03-22
公開日2012-04-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献Catalytic Mechanism of Perosamine N-Acetyltransferase Revealed by High-Resolution X-ray Crystallographic Studies and Kinetic Analyses.
Biochemistry, 51, 2012
4YQ7
DownloadVisualize
BU of 4yq7 by Molmil
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
分子名称: 6-{[2-(dimethylamino)benzyl]amino}pyridine-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
著者Elkins, P.A, Bonnette, W.G.
登録日2015-03-13
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To Be Published
2AG3
DownloadVisualize
BU of 2ag3 by Molmil
Heterocyclic Peptide Backbone Modification in Gcn4-pLI Based Coiled Coils: Substitution of the K(15)-L(16) amide with a triazole
分子名称: GCN4-pLI
著者Horne, W.S, Ghadiri, M.R.
登録日2005-07-26
公開日2006-08-08
最終更新日2018-03-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Copper-Catalyzed Azide-Alkyne Cycloaddition as a Non-native Ligation Strategy toward Backbone-Modified Peptides
To be Published
1Z3T
DownloadVisualize
BU of 1z3t by Molmil
Structure of Phanerochaete chrysosporium cellobiohydrolase Cel7D (CBH58) in complex with cellobiose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, cellulase
著者Ubhayasekera, W, Stahlberg, J, Mowbray, S.L.
登録日2005-03-14
公開日2005-04-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of Phanerochaete chrysosporium Cel7D in complex with product and inhibitors
Febs J., 272, 2005
2JF9
DownloadVisualize
BU of 2jf9 by Molmil
ESTROGEN RECEPTOR ALPHA LBD IN COMPLEX WITH A TAMOXIFEN-SPECIFIC PEPTIDE ANTAGONIST
分子名称: 1,2-ETHANEDIOL, 4-HYDROXYTAMOXIFEN, AB5 PEPTIDE, ...
著者Heldring, N, Pawson, T, McDonnell, D, Treuter, E, Gustafsson, J.A, Pike, A.C.W.
登録日2007-01-29
公開日2007-02-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Insights Into Corepressor Recognition by Antagonist-Bound Estrogen Receptors.
J.Biol.Chem., 282, 2007
4YS6
DownloadVisualize
BU of 4ys6 by Molmil
CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE
分子名称: CHLORIDE ION, Putative solute-binding component of ABC transporter, SODIUM ION, ...
著者Vetting, M.W, Patskovsky, Y, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Koss, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2015-03-16
公開日2015-04-08
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.698 Å)
主引用文献CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE
To be published
1JIK
DownloadVisualize
BU of 1jik by Molmil
Crystal structure of S. aureus TyrRS in complex with SB-243545
分子名称: [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID BUTYL ESTER, tyrosyl-tRNA synthetase
著者Qiu, X, Janson, C.A, Smith, W.W, Jarvest, R.L.
登録日2001-07-02
公開日2001-10-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors.
Protein Sci., 10, 2001
2AHN
DownloadVisualize
BU of 2ahn by Molmil
High resolution structure of a cherry allergen Pru av 2
分子名称: Thaumatin-like protein
著者Dall'Antonia, Y, Pavkov, T, Fuchs, H, Breiteneder, H, Keller, W.
登録日2005-07-28
公開日2006-10-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The high-resolution crystal structure of an allergenic thaumatin-like protein, Pru av 2, isolated from ripe cherries
To be published
4YR8
DownloadVisualize
BU of 4yr8 by Molmil
Crystal structure of JNK in complex with a regulator protein
分子名称: CHLORIDE ION, Dual specificity protein phosphatase 16, Mitogen-activated protein kinase 8
著者Liu, X, Wang, J, Wu, J.W, Wang, Z.X.
登録日2015-03-14
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A conserved motif in JNK/p38-specific MAPK phosphatases as a determinant for JNK1 recognition and inactivation.
Nat Commun, 7, 2016

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon